Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 11M
-rw-r--r-- 1 mcc users 6.6K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 23K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 78K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 5.3K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 6.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 112K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 350K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 6.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 10 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 9.5M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBLF-PT-S06J06T04, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531600244
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBLF-PT-S06J06T04-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527473700615

Flatten gal took : 2064 ms
Constant places removed 6 places and 0 transitions.
Reduce isomorphic transitions removed 5380 transitions.
Performed 52 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 5438 rules applied. Total rules applied 5438 place count 500 transition count 1722
Constant places removed 52 places and 0 transitions.
Iterating post reduction 1 with 52 rules applied. Total rules applied 5490 place count 448 transition count 1722
Performed 52 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 52 Pre rules applied. Total rules applied 5490 place count 448 transition count 1670
Constant places removed 52 places and 0 transitions.
Iterating post reduction 2 with 52 rules applied. Total rules applied 5542 place count 396 transition count 1670
Symmetric choice reduction at 3 with 8 rule applications. Total rules 5550 place count 396 transition count 1670
Constant places removed 8 places and 8 transitions.
Iterating post reduction 3 with 8 rules applied. Total rules applied 5558 place count 388 transition count 1662
Symmetric choice reduction at 4 with 2 rule applications. Total rules 5560 place count 388 transition count 1662
Constant places removed 2 places and 8 transitions.
Iterating post reduction 4 with 2 rules applied. Total rules applied 5562 place count 386 transition count 1654
Performed 36 Post agglomeration using F-continuation condition.
Constant places removed 36 places and 0 transitions.
Iterating post reduction 5 with 36 rules applied. Total rules applied 5598 place count 350 transition count 1618
Applied a total of 5598 rules in 449 ms. Remains 350 /506 variables (removed 156) and now considering 1618/7154 (removed 5536) transitions.
Normalized transition count is 1594
// Phase 1: matrix 1594 rows 350 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5072502540615706035.txt, -o, /tmp/graph5072502540615706035.bin, -w, /tmp/graph5072502540615706035.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5072502540615706035.bin, -l, -1, -v, -w, /tmp/graph5072502540615706035.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 26 ordering constraints for composite.
built 62 ordering constraints for composite.
built 358 ordering constraints for composite.
built 156 ordering constraints for composite.
Compilation finished in 25980 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 66 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
LTSmin run took 17681 ms.
FORMULA PolyORBLF-PT-S06J06T04-ReachabilityDeadlock-0 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
ITS tools runner thread asked to quit. Dying gracefully.

BK_STOP 1527473754667

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 28, 2018 2:15:02 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 28, 2018 2:15:02 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 28, 2018 2:15:03 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 591 ms
May 28, 2018 2:15:03 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 506 places.
May 28, 2018 2:15:04 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 7154 transitions.
May 28, 2018 2:15:06 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2059 ms
May 28, 2018 2:15:06 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 174 ms
May 28, 2018 2:15:07 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 7154 transitions.
May 28, 2018 2:15:09 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 28, 2018 2:15:09 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 1618 transitions.
May 28, 2018 2:15:09 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (1618) to apply POR reductions. Disabling POR matrices.
May 28, 2018 2:15:09 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 303 ms
May 28, 2018 2:15:09 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 382ms conformant to PINS in folder :/home/mcc/execution
May 28, 2018 2:15:09 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 311 ms
Begin: Mon May 28 02:15:10 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Mon May 28 02:15:10 2018
network size: 350 nodes, 4618 links, 3236 weight
quality increased from -0.0173582 to 0.454609
end computation: Mon May 28 02:15:10 2018
level 1:
start computation: Mon May 28 02:15:10 2018
network size: 27 nodes, 287 links, 3236 weight
quality increased from 0.454609 to 0.497459
end computation: Mon May 28 02:15:10 2018
level 2:
start computation: Mon May 28 02:15:10 2018
network size: 10 nodes, 56 links, 3236 weight
quality increased from 0.497459 to 0.497459
end computation: Mon May 28 02:15:10 2018
End: Mon May 28 02:15:10 2018
Total duration: 0 sec
0.497459
May 28, 2018 2:15:10 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 28, 2018 2:15:10 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 255 ms
May 28, 2018 2:15:10 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 28, 2018 2:15:11 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 712 redundant transitions.
May 28, 2018 2:15:11 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 28 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBLF-PT-S06J06T04"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBLF-PT-S06J06T04.tgz
mv PolyORBLF-PT-S06J06T04 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBLF-PT-S06J06T04, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531600244"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;