Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 7.1M
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 48K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 75K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 242K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 8.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 27K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 60K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 189K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 9.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 33K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 28K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 92K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 3.3K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 6.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 5 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 10 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 6.2M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PolyORBLF-PT-S04J06T10, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r129-smll-152673531500216
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PolyORBLF-PT-S04J06T10-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527449461479

Flatten gal took : 1502 ms
Constant places removed 4 places and 0 transitions.
Reduce isomorphic transitions removed 2710 transitions.
Performed 130 Post agglomeration using F-continuation condition.
Iterating post reduction 0 with 2844 rules applied. Total rules applied 2844 place count 962 transition count 2514
Constant places removed 130 places and 0 transitions.
Iterating post reduction 1 with 130 rules applied. Total rules applied 2974 place count 832 transition count 2514
Performed 110 Pre agglomeration using Quasi-Persistent + HF-interchangeable + Divergent Free condition.
Pre-agglomeration after 2 with 110 Pre rules applied. Total rules applied 2974 place count 832 transition count 2404
Constant places removed 110 places and 0 transitions.
Iterating post reduction 2 with 110 rules applied. Total rules applied 3084 place count 722 transition count 2404
Symmetric choice reduction at 3 with 20 rule applications. Total rules 3104 place count 722 transition count 2404
Constant places removed 20 places and 20 transitions.
Iterating post reduction 3 with 20 rules applied. Total rules applied 3124 place count 702 transition count 2384
Symmetric choice reduction at 4 with 2 rule applications. Total rules 3126 place count 702 transition count 2384
Constant places removed 2 places and 20 transitions.
Iterating post reduction 4 with 2 rules applied. Total rules applied 3128 place count 700 transition count 2364
Performed 70 Post agglomeration using F-continuation condition.
Constant places removed 70 places and 0 transitions.
Iterating post reduction 5 with 70 rules applied. Total rules applied 3198 place count 630 transition count 2294
Applied a total of 3198 rules in 701 ms. Remains 630 /966 variables (removed 336) and now considering 2294/5354 (removed 3060) transitions.
Normalized transition count is 2254
// Phase 1: matrix 2254 rows 630 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph7104542244055137748.txt, -o, /tmp/graph7104542244055137748.bin, -w, /tmp/graph7104542244055137748.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph7104542244055137748.bin, -l, -1, -v, -w, /tmp/graph7104542244055137748.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 29 ordering constraints for composite.
built 254 ordering constraints for composite.
built 124 ordering constraints for composite.
built 340 ordering constraints for composite.
built 670 ordering constraints for composite.
Compilation finished in 37258 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 63 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 7:31:03 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 7:31:03 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 7:31:04 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 449 ms
May 27, 2018 7:31:04 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 966 places.
May 27, 2018 7:31:04 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 5354 transitions.
May 27, 2018 7:31:06 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1497 ms
May 27, 2018 7:31:06 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 139 ms
May 27, 2018 7:31:07 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 5354 transitions.
May 27, 2018 7:31:09 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 7:31:10 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 2294 transitions.
May 27, 2018 7:31:10 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (2294) to apply POR reductions. Disabling POR matrices.
May 27, 2018 7:31:10 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 383 ms
May 27, 2018 7:31:10 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 496ms conformant to PINS in folder :/home/mcc/execution
May 27, 2018 7:31:10 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 331 ms
Begin: Sun May 27 19:31:10 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 19:31:10 2018
network size: 630 nodes, 9022 links, 4588 weight
quality increased from -0.0090273 to 0.552717
end computation: Sun May 27 19:31:10 2018
level 1:
start computation: Sun May 27 19:31:10 2018
network size: 44 nodes, 436 links, 4588 weight
quality increased from 0.552717 to 0.587129
end computation: Sun May 27 19:31:10 2018
level 2:
start computation: Sun May 27 19:31:10 2018
network size: 11 nodes, 63 links, 4588 weight
quality increased from 0.587129 to 0.587129
end computation: Sun May 27 19:31:10 2018
End: Sun May 27 19:31:10 2018
Total duration: 0 sec
0.587129
May 27, 2018 7:31:11 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 7:31:11 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 290 ms
May 27, 2018 7:31:11 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 7:31:13 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1320 redundant transitions.
May 27, 2018 7:31:13 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 41 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PolyORBLF-PT-S04J06T10"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PolyORBLF-PT-S04J06T10.tgz
mv PolyORBLF-PT-S04J06T10 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PolyORBLF-PT-S04J06T10, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r129-smll-152673531500216"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;