Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...................
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 102 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 340 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 4 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 25K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is MAPK-PT-008, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r118-csrt-152666478100158
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-008-CTLFireability-00
FORMULA_NAME MAPK-PT-008-CTLFireability-01
FORMULA_NAME MAPK-PT-008-CTLFireability-02
FORMULA_NAME MAPK-PT-008-CTLFireability-03
FORMULA_NAME MAPK-PT-008-CTLFireability-04
FORMULA_NAME MAPK-PT-008-CTLFireability-05
FORMULA_NAME MAPK-PT-008-CTLFireability-06
FORMULA_NAME MAPK-PT-008-CTLFireability-07
FORMULA_NAME MAPK-PT-008-CTLFireability-08
FORMULA_NAME MAPK-PT-008-CTLFireability-09
FORMULA_NAME MAPK-PT-008-CTLFireability-10
FORMULA_NAME MAPK-PT-008-CTLFireability-11
FORMULA_NAME MAPK-PT-008-CTLFireability-12
FORMULA_NAME MAPK-PT-008-CTLFireability-13
FORMULA_NAME MAPK-PT-008-CTLFireability-14
FORMULA_NAME MAPK-PT-008-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527290773460


BK_STOP 1527290783303

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using MAPK-PT-008 as instance name.
Using MAPK as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 194, 'Memory': 102.24, 'Tool': 'gspn'}, {'Time': 1609, 'Memory': 132.18, 'Tool': 'gspn'}, {'Time': 2905, 'Memory': 240.04, 'Tool': 'itstools'}, {'Time': 3135, 'Memory': 263.7, 'Tool': 'itstools'}, {'Time': 6433, 'Memory': 7483.45, 'Tool': 'marcie'}, {'Time': 6541, 'Memory': 7482.67, 'Tool': 'marcie'}, {'Time': 149891, 'Memory': 666.05, 'Tool': 'lola'}, {'Time': 156338, 'Memory': 664.72, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'itstools'}].
Learned tool itstools is 14.974226804123711x far from the best tool gspn.
CTLFireability itstools MAPK-PT-008...
May 25, 2018 11:26:20 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-z3path, /usr/bin/z3, -yices2path, /usr/bin/yices, -ltsminpath, /usr/bin, -smt, -its, -pnfolder, /mcc-data, -examination, CTLFireability]
May 25, 2018 11:26:20 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /mcc-data/model.pnml
May 25, 2018 11:26:20 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 38 ms
May 25, 2018 11:26:20 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
May 25, 2018 11:26:20 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
May 25, 2018 11:26:20 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /mcc-data/model.pnml.img.gal : 6 ms
May 25, 2018 11:26:20 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 25 ms
May 25, 2018 11:26:20 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /mcc-data/CTLFireability.pnml.gal : 1 ms
May 25, 2018 11:26:20 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /mcc-data/CTLFireability.ctl : 2 ms
Invoking ITS tools like this :CommandLine [args=[/usr/share/itscl/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201804131302/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /mcc-data/CTLFireability.pnml.gal, -t, CGAL, -ctl, /mcc-data/CTLFireability.ctl], workingDir=/mcc-data]

its-ctl command run as :

/usr/share/itscl/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201804131302/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /mcc-data/CTLFireability.pnml.gal -t CGAL -ctl /mcc-data/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,6.11064e+06,0.122702,8432,2,2639,5,23385,6,0,121,23413,0


Converting to forward existential form...Done !
original formula: AG(((!(MEK_RafP>=1))||(!((ERK_MEKPP>=1)&&(((MEKP>=1)&&(RafP>=1))&&(RafP_Phase1>=1))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((!(MEK_RafP>=1))||(!((ERK_MEKPP>=1)&&(((MEKP>=1)&&(RafP>=1))&&(RafP_Phase1>=1)))))))] = FALSE
(forward)formula 0,0,0.133055,8868,1,0,8,23385,9,2,160,23413,1
FORMULA MAPK-PT-008-CTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E(!(((((Phase2>=1)&&(MEKP>=1))&&(ERKP_Phase3>=1))&&(ERK_MEKPP>=1))) U AX(((ERKP_MEKPP>=1)&&((MEK>=1)&&(RafP>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,!(((((Phase2>=1)&&(MEKP>=1))&&(ERKP_Phase3>=1))&&(ERK_MEKPP>=1)))) * !(EX(!(((ERKP_MEKPP>=1)&&((MEK>=1)&&(RafP>=1)))))))] != FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
Hit Full ! (commute/partial/dont) 15/0/15
(forward)formula 1,1,0.958451,24664,1,0,13,94789,21,4,683,113263,8
FORMULA MAPK-PT-008-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(EX((((Raf_RasGTP>=1)||((MEKPP>=1)&&(Phase2>=1)))||((Phase1>=1)&&(RafP>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX((((Raf_RasGTP>=1)||((MEKPP>=1)&&(Phase2>=1)))||((Phase1>=1)&&(RafP>=1))))))] = FALSE
(forward)formula 2,1,0.98152,25192,1,0,14,98490,22,4,687,116615,10
FORMULA MAPK-PT-008-CTLFireability-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((EG((((Phase1>=1)&&(RafP>=1))&&(ERK_MEKPP>=1))) * AG(((ERKP_MEKPP>=1)||(ERKP_Phase3>=1)))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * EG((((Phase1>=1)&&(RafP>=1))&&(ERK_MEKPP>=1)))) * !(E(TRUE U !(((ERKP_MEKPP>=1)||(ERKP_Phase3>=1))))))] != FALSE
(forward)formula 3,0,1.11532,28096,1,0,15,113434,28,4,715,131964,13
FORMULA MAPK-PT-008-CTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EG(EF(AG(((Phase3>=1)&&(ERKPP>=1)))))
=> equivalent forward existential formula: [FwdG(Init,E(TRUE U !(E(TRUE U !(((Phase3>=1)&&(ERKPP>=1)))))))] != FALSE
(forward)formula 4,0,1.14979,29152,1,0,16,116313,36,4,733,135139,18
FORMULA MAPK-PT-008-CTLFireability-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(AG((MEKP_RafP>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !((MEKP_RafP>=1)))))] != FALSE
(forward)formula 5,0,1.15118,29416,1,0,17,116398,38,4,734,135220,21
FORMULA MAPK-PT-008-CTLFireability-05 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (AF((MEK_RafP>=1)) + E((((Phase2>=1)&&(MEKP>=1))||(!((Phase1>=1)&&(RafP>=1)))) U AF(((MEKP>=1)&&(RafP>=1)))))
=> equivalent forward existential formula: [FwdG((Init * !(E((((Phase2>=1)&&(MEKP>=1))||(!((Phase1>=1)&&(RafP>=1)))) U !(EG(!(((MEKP>=1)&&(RafP>=1)))))))),!((MEK_RafP>=1)))] = FALSE
Hit Full ! (commute/partial/dont) 14/0/16
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 6,0,1.23735,31264,1,0,24,128371,61,8,803,148987,30
FORMULA MAPK-PT-008-CTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EF((((MEKP_Phase2>=1)&&((ERKP>=1)&&(Phase3>=1)))||(((Raf>=1)&&(RasGTP>=1))&&(ERKP_Phase3>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U (((MEKP_Phase2>=1)&&((ERKP>=1)&&(Phase3>=1)))||(((Raf>=1)&&(RasGTP>=1))&&(ERKP_Phase3>=1))))))] = FALSE
(forward)formula 7,1,1.54757,38456,1,0,25,163457,62,8,808,184913,33
FORMULA MAPK-PT-008-CTLFireability-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AX(E(!((ERK_MEKPP>=1)) U (((Phase3>=1)&&(ERKPP>=1))&&(MEKPP_Phase2>=1))))
=> equivalent forward existential formula: [(EY(Init) * !(E(!((ERK_MEKPP>=1)) U (((Phase3>=1)&&(ERKPP>=1))&&(MEKPP_Phase2>=1)))))] = FALSE
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 8,0,1.83582,44264,1,0,30,196172,71,10,832,225105,38
FORMULA MAPK-PT-008-CTLFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((MEK>=1)&&(RafP>=1)) + (AG(EF((ERKP_Phase3>=1))) + EG((((MEKPP_Phase2>=1)&&(ERKP_MEKPP>=1))||(((Phase2>=1)&&(MEKP>=1))&&((MEKP>=1)&&(RafP>=1)))))))
=> equivalent forward existential formula: [(FwdU(((Init * !(((MEK>=1)&&(RafP>=1)))) * !(EG((((MEKPP_Phase2>=1)&&(ERKP_MEKPP>=1))||(((Phase2>=1)&&(MEKP>=1))&&((MEKP>=1)&&(RafP>=1))))))),TRUE) * !(E(TRUE U (ERKP_Phase3>=1))))] = FALSE
(forward)formula 9,1,1.85766,44528,1,0,31,198564,72,10,832,227937,41
FORMULA MAPK-PT-008-CTLFireability-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(!((EF((MEKP_RafP>=1)) + EG(((MEKPP>=1)&&(ERKP>=1))))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * !(EG(((MEKPP>=1)&&(ERKP>=1))))) * !(E(TRUE U (MEKP_RafP>=1))))] != FALSE
(forward)formula 10,0,1.86479,44792,1,0,32,199187,72,10,832,228570,44
FORMULA MAPK-PT-008-CTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E(EG(!(((MEK>=1)&&(RafP>=1)))) U E((MEK_RafP>=1) U (MEK_RafP>=1)))
=> equivalent forward existential formula: [(FwdU(FwdU(Init,EG(!(((MEK>=1)&&(RafP>=1))))),(MEK_RafP>=1)) * (MEK_RafP>=1))] != FALSE
Hit Full ! (commute/partial/dont) 27/0/3
(forward)formula 11,0,1.87384,45320,1,0,39,200636,90,18,846,229882,60
FORMULA MAPK-PT-008-CTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EF(!(((ERKP_MEKPP>=1)||(MEKP_RafP>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !(((ERKP_MEKPP>=1)||(MEKP_RafP>=1))))))] = FALSE
(forward)formula 12,1,1.87588,45320,1,0,40,200670,92,18,848,229894,63
FORMULA MAPK-PT-008-CTLFireability-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((Raf_RasGTP>=1)||((Phase2>=1)&&(MEKP>=1)))
=> equivalent forward existential formula: [(Init * ((Raf_RasGTP>=1)||((Phase2>=1)&&(MEKP>=1))))] != FALSE
(forward)formula 13,0,1.87642,45320,1,0,41,200670,93,18,849,229894,64
FORMULA MAPK-PT-008-CTLFireability-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((Raf_RasGTP>=1) + (EX((((Phase3>=1)&&(ERKPP>=1))&&(ERK_MEKPP>=1))) * (MEK_RafP>=1))) + EF(EX((((ERKP>=1)&&(Phase3>=1))||(ERKP_Phase3>=1)))))
=> equivalent forward existential formula: (([(Init * (Raf_RasGTP>=1))] != FALSE + [(EY((Init * (MEK_RafP>=1))) * (((Phase3>=1)&&(ERKPP>=1))&&(ERK_MEKPP>=1)))] != FALSE) + [(EY(FwdU(Init,TRUE)) * (((ERKP>=1)&&(Phase3>=1))||(ERKP_Phase3>=1)))] != FALSE)
(forward)formula 14,1,1.88362,45320,1,0,45,201329,96,19,852,231174,69
FORMULA MAPK-PT-008-CTLFireability-14 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EG(EX(((ERKP>=1)&&(Phase3>=1))))
=> equivalent forward existential formula: [FwdG(Init,EX(((ERKP>=1)&&(Phase3>=1))))] != FALSE
(forward)formula 15,0,2.01579,47168,1,0,47,212098,100,20,852,243576,71
FORMULA MAPK-PT-008-CTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-008"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-008.tgz
mv MAPK-PT-008 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is MAPK-PT-008, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r118-csrt-152666478100158"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;