Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 13M
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.9K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.9K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 117 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 355 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 9 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 13M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PhaseVariation-PT-D20CS100, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117-csrt-152666477200646
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-00
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-01
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-02
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-03
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-04
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-05
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-06
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-07
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-08
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-09
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-10
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-11
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-12
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-13
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-14
FORMULA_NAME PhaseVariation-PT-D20CS100-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527268456848

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph3400661133775311131.txt, -o, /tmp/graph3400661133775311131.bin, -w, /tmp/graph3400661133775311131.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph3400661133775311131.bin, -l, -1, -v, -w, /tmp/graph3400661133775311131.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-00 with value :i5.u341.pool__5_5_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-01 with value :i10.u44.cell___18_14__B_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-02 with value :i10.u44.cell___18_14__A_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-03 with value :i14.u67.cell___2_19__B_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-04 with value :i2.u159.pool__13_12_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-05 with value :i1.u10.cell___11_14__B_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-06 with value :i7.u356.cell___6_6__B_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-07 with value :i6.u90.cell___6_12__B_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-08 with value :i9.u211.cell___16_3__B_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-09 with value :i5.u114.pool__8_4_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-10 with value :i7.u345.cell___5_9__A_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-11 with value :i14.u336.pool__5_18_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-12 with value :i5.u268.pool__1_2_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-13 with value :i0.u372.pool__8_19_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-14 with value :i15.u6.cell___10_4__B_
Read [bounds] property : PhaseVariation-PT-D20CS100-UpperBounds-15 with value :i16.u182.cell___14_20__B_
built 51 ordering constraints for composite.
built 620 ordering constraints for composite.
built 432 ordering constraints for composite.
built 1300 ordering constraints for composite.
built 1008 ordering constraints for composite.
built 1140 ordering constraints for composite.
built 948 ordering constraints for composite.
built 972 ordering constraints for composite.
built 13424 ordering constraints for composite.
built 1112 ordering constraints for composite.
built 1152 ordering constraints for composite.
built 1024 ordering constraints for composite.
built 552 ordering constraints for composite.
built 1440 ordering constraints for composite.
built 612 ordering constraints for composite.
built 880 ordering constraints for composite.
built 612 ordering constraints for composite.
built 812 ordering constraints for composite.

BK_STOP 1527269326894

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 5:14:18 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 5:14:18 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 5:14:19 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 727 ms
May 25, 2018 5:14:19 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1202 places.
May 25, 2018 5:14:19 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 13457 transitions.
May 25, 2018 5:14:19 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 5:14:22 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 2443 ms
May 25, 2018 5:14:23 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1300 ms
Begin: Fri May 25 17:14:25 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 17:14:25 2018
network size: 1202 nodes, 18258 links, 26912 weight
quality increased from -0.0982077 to 0.156463
end computation: Fri May 25 17:14:25 2018
level 1:
start computation: Fri May 25 17:14:25 2018
network size: 393 nodes, 4019 links, 26912 weight
quality increased from 0.156463 to 0.228691
end computation: Fri May 25 17:14:25 2018
level 2:
start computation: Fri May 25 17:14:25 2018
network size: 58 nodes, 454 links, 26912 weight
quality increased from 0.228691 to 0.246725
end computation: Fri May 25 17:14:25 2018
level 3:
start computation: Fri May 25 17:14:25 2018
network size: 18 nodes, 124 links, 26912 weight
quality increased from 0.246725 to 0.246829
end computation: Fri May 25 17:14:25 2018
level 4:
start computation: Fri May 25 17:14:25 2018
network size: 17 nodes, 117 links, 26912 weight
quality increased from 0.246829 to 0.246829
end computation: Fri May 25 17:14:25 2018
End: Fri May 25 17:14:25 2018
Total duration: 0 sec
0.246829
May 25, 2018 5:14:25 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 5:14:27 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1240 ms
May 25, 2018 5:14:27 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 5:15:28 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 35047 redundant transitions.
May 25, 2018 5:15:29 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 187 ms
May 25, 2018 5:15:29 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PhaseVariation-PT-D20CS100"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PhaseVariation-PT-D20CS100.tgz
mv PhaseVariation-PT-D20CS100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PhaseVariation-PT-D20CS100, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117-csrt-152666477200646"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;