Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................
/home/mcc/execution
total 812K
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.9K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 10K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 117 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 355 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.8K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 9 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 633K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is PhaseVariation-PT-D05CS100, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r117-csrt-152666477200618
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-00
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-01
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-02
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-03
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-04
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-05
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-06
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-07
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-08
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-09
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-10
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-11
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-12
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-13
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-14
FORMULA_NAME PhaseVariation-PT-D05CS100-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527265643982

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5245633005638534504.txt, -o, /tmp/graph5245633005638534504.bin, -w, /tmp/graph5245633005638534504.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5245633005638534504.bin, -l, -1, -v, -w, /tmp/graph5245633005638534504.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-00 with value :u0.pool__3_3_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-01 with value :i2.u3.cell___1_1__A_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-02 with value :u0.pool__3_3_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-03 with value :i1.u2.pool__5_4_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-04 with value :u16.cell___4_2__A_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-05 with value :i1.u15.pool__5_5_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-06 with value :i6.u13.pool__5_2_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-07 with value :u16.pool__3_2_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-08 with value :i3.u9.cell___2_4__B_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-09 with value :u16.pool__4_1_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-10 with value :i1.u15.cell___5_5__A_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-11 with value :i2.u8.cell___2_3__A_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-12 with value :i3.u6.cell___2_5__A_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-13 with value :i3.u6.pool__1_4_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-14 with value :i2.u8.cell___2_3__B_
Read [bounds] property : PhaseVariation-PT-D05CS100-UpperBounds-15 with value :u16.cell___5_1__B_
built 17 ordering constraints for composite.
built 136 ordering constraints for composite.
built 188 ordering constraints for composite.
built 136 ordering constraints for composite.
built 104 ordering constraints for composite.
built 132 ordering constraints for composite.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 4:27:26 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 4:27:26 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 4:27:26 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 168 ms
May 25, 2018 4:27:26 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 77 places.
May 25, 2018 4:27:26 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 677 transitions.
May 25, 2018 4:27:27 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 36 ms
May 25, 2018 4:27:27 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 4:27:27 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 203 ms
May 25, 2018 4:27:27 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 104 ms
Begin: Fri May 25 16:27:27 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 16:27:27 2018
network size: 77 nodes, 978 links, 1352 weight
quality increased from -0.104478 to 0.158155
end computation: Fri May 25 16:27:27 2018
level 1:
start computation: Fri May 25 16:27:27 2018
network size: 17 nodes, 129 links, 1352 weight
quality increased from 0.158155 to 0.174448
end computation: Fri May 25 16:27:27 2018
level 2:
start computation: Fri May 25 16:27:27 2018
network size: 8 nodes, 50 links, 1352 weight
quality increased from 0.174448 to 0.175311
end computation: Fri May 25 16:27:27 2018
level 3:
start computation: Fri May 25 16:27:27 2018
network size: 7 nodes, 41 links, 1352 weight
quality increased from 0.175311 to 0.175311
end computation: Fri May 25 16:27:27 2018
End: Fri May 25 16:27:27 2018
Total duration: 0 sec
0.175311
May 25, 2018 4:27:27 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 4:27:27 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 89 ms
May 25, 2018 4:27:27 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 4:27:28 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1287 redundant transitions.
May 25, 2018 4:27:28 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 11 ms
May 25, 2018 4:27:28 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="PhaseVariation-PT-D05CS100"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/PhaseVariation-PT-D05CS100.tgz
mv PhaseVariation-PT-D05CS100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is PhaseVariation-PT-D05CS100, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r117-csrt-152666477200618"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;