Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................
/home/mcc/execution
total 196K
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.2K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 102 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 340 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 4 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 25K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is MAPK-PT-320, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r115-csrt-152666473700192
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-320-CTLCardinality-00
FORMULA_NAME MAPK-PT-320-CTLCardinality-01
FORMULA_NAME MAPK-PT-320-CTLCardinality-02
FORMULA_NAME MAPK-PT-320-CTLCardinality-03
FORMULA_NAME MAPK-PT-320-CTLCardinality-04
FORMULA_NAME MAPK-PT-320-CTLCardinality-05
FORMULA_NAME MAPK-PT-320-CTLCardinality-06
FORMULA_NAME MAPK-PT-320-CTLCardinality-07
FORMULA_NAME MAPK-PT-320-CTLCardinality-08
FORMULA_NAME MAPK-PT-320-CTLCardinality-09
FORMULA_NAME MAPK-PT-320-CTLCardinality-10
FORMULA_NAME MAPK-PT-320-CTLCardinality-11
FORMULA_NAME MAPK-PT-320-CTLCardinality-12
FORMULA_NAME MAPK-PT-320-CTLCardinality-13
FORMULA_NAME MAPK-PT-320-CTLCardinality-14
FORMULA_NAME MAPK-PT-320-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1527151700406


BK_STOP 1527151878985

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using MAPK-PT-320 as instance name.
Using MAPK as model name.
Using algorithm or tool bmdt.
Model characteristics are: {'Examination': 'CTLCardinality', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 662253, 'Memory': 15938.38, 'Tool': 'lola'}, {'Time': 670210, 'Memory': 15937.45, 'Tool': 'lola'}, {'Time': 717672, 'Memory': 15933.82, 'Tool': 'marcie'}, {'Time': 741609, 'Memory': 15933.83, 'Tool': 'marcie'}].
Learned tools are: [{'Tool': 'itstools'}].
CTLCardinality lola MAPK-PT-320...
----- Start make prepare stderr -----

Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
MAPK-PT-320: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
MAPK-PT-320: translating PT formula CTLCardinality into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
CTLCardinality @ MAPK-PT-320 @ 3539 seconds
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
lola: LoLA will run for 3539 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 52/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 22 places, 30 transitions, 15 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 25 transition conflict sets
lola: TASK
lola: reading formula from MAPK-PT-320-CTLCardinality.task
lola: A (G (A (((MEKPP_Phase2 <= RasGTP) U (ERKPP_Phase3 <= Raf))))) : (NOT((E (G ((MEK <= MEKPP))) OR E (F ((3 <= MEKP_RafP))))) AND NOT((A (G ((3 <= MEKP))) AND ((3 <= RasGTP) OR (MEKPP_Phase2 <= ERKPP_Phase3) OR ((1 <= RafP) AND (MEKP_Phase2 <= Phase2)))))) : (NOT(((1 <= Phase3) AND A (G ((RafP_Phase1 <= RasGTP))))) AND (A (((MEKPP <= Raf_RasGTP) U (1 <= MEKP_Phase2))) OR (MEKPP <= MEKP))) : ((Raf_RasGTP <= ERKP_MEKPP) AND A (G ((2 <= ERK)))) : ((ERKPP_Phase3 <= ERK_MEKPP) AND (E (((MEKP <= MEK_RafP) U (RasGTP <= ERKP_MEKPP))) AND (MEKPP_Phase2 <= MEKP))) : E (((((MEK <= MEK_RafP) OR (MEKPP_Phase2 <= Raf_RasGTP)) AND (RafP_Phase1 <= 0)) U E (F ((RasGTP <= ERKP))))) : (E (F (((Phase3 <= ERK_MEKPP) AND (MEKP_RafP <= Phase1) AND (ERKP + 1 <= Phase3)))) AND ((E (F ((MEKPP_Phase2 <= ERKP))) OR E (X ((MEK <= MEK_RafP)))) OR (((ERKP_Phase3 <= Phase1) OR (Phase3 <= ERKP) OR (Phase2 <= ERKPP) OR (3 <= MEKP_RafP)) AND E (X ((2 <= MEKPP)))))) : E (F (E (X ((RasGTP <= 2))))) : NOT((A (G ((3 <= Phase1))) AND (A (F ((MEKP_RafP <= MEKP))) OR (((3 <= Phase1) OR (2 <= MEKP_RafP)) AND (ERKPP + 1 <= Raf))))) : A (G (((MEK_RafP <= ERKP_MEKPP) OR (MEKP_RafP + 1 <= Phase2)))) : E (F (A (G (((1 <= Phase1) OR (3 <= RafP_Phase1)))))) : A (F (A (G (((MEK <= Phase1) AND (ERKP_Phase3 <= Phase3)))))) : ((((RasGTP + 1 <= MEK_RafP) AND (ERKP_MEKPP + 1 <= Raf_RasGTP) AND (1 <= ERKP_Phase3)) OR ((1 <= ERK) AND (RafP <= Phase3))) AND (NOT(E (F ((Phase1 <= Phase2)))) OR (A (G ((2 <= MEK_RafP))) AND ((ERKP_MEKPP <= 1) OR (RasGTP + 1 <= MEKP_RafP))))) : E (F (NOT(A (X ((2 <= Phase1)))))) : E (G (E (((ERKP_Phase3 <= RafP_Phase1) U (3 <= ERKP_MEKPP))))) : A (F (E (F ((MEK <= RafP_Phase1)))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (A (((MEKPP_Phase2 <= RasGTP) U (ERKPP_Phase3 <= Raf)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(E(TRUE U NOT(A((MEKPP_Phase2 <= RasGTP) U (ERKPP_Phase3 <= Raf)))))
lola: processed formula length: 71
lola: 2 rewrites
lola: formula mentions 0 of 22 places; total mentions: 0
lola: closed formula file MAPK-PT-320-CTLCardinality.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 60 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 2589277 markings, 9078803 edges, 3096151901171875840 markings/sec, 0 secs
lola: 4916414 markings, 17205024 edges, 465427 markings/sec, 5 secs
lola: 7277811 markings, 25465939 edges, 472279 markings/sec, 10 secs
lola: 9612910 markings, 33644395 edges, 467020 markings/sec, 15 secs
lola: 11828104 markings, 41440598 edges, 443039 markings/sec, 20 secs
lola: 14109776 markings, 49429428 edges, 456334 markings/sec, 25 secs
lola: 16599320 markings, 58138183 edges, 497909 markings/sec, 30 secs
lola: 18871491 markings, 66073011 edges, 454434 markings/sec, 35 secs
lola: 21081187 markings, 73793705 edges, 441939 markings/sec, 40 secs
lola: 23144423 markings, 81001528 edges, 412647 markings/sec, 45 secs
lola: 25400090 markings, 88879882 edges, 451133 markings/sec, 50 secs
lola: 27492476 markings, 96190485 edges, 418477 markings/sec, 55 secs
lola: 29611603 markings, 103595280 edges, 423825 markings/sec, 60 secs
lola: 31684746 markings, 110849131 edges, 414629 markings/sec, 65 secs
lola: 33732406 markings, 118004481 edges, 409532 markings/sec, 70 secs
lola: 35801738 markings, 125233171 edges, 413866 markings/sec, 75 secs
lola: 37961122 markings, 132772022 edges, 431877 markings/sec, 80 secs
lola: 40294155 markings, 140945162 edges, 466607 markings/sec, 85 secs
lola: 42642680 markings, 149148381 edges, 469705 markings/sec, 90 secs
lola: 44813262 markings, 156727701 edges, 434116 markings/sec, 95 secs
lola: 46989733 markings, 164327686 edges, 435294 markings/sec, 100 secs
lola: 48972808 markings, 171255330 edges, 396615 markings/sec, 105 secs
lola: 50976587 markings, 178253300 edges, 400756 markings/sec, 110 secs
lola: 53129870 markings, 185773211 edges, 430657 markings/sec, 115 secs
lola: 55155963 markings, 192849749 edges, 405219 markings/sec, 120 secs
lola: 57249267 markings, 200162280 edges, 418661 markings/sec, 125 secs
lola: 59288326 markings, 207284417 edges, 407812 markings/sec, 130 secs
lola: 61302642 markings, 214318774 edges, 402863 markings/sec, 135 secs
lola: 63404011 markings, 221657578 edges, 420274 markings/sec, 140 secs
lola: 65696914 markings, 229680449 edges, 458581 markings/sec, 145 secs
lola: 67667745 markings, 236577436 edges, 394166 markings/sec, 150 secs
lola: 69621389 markings, 243453796 edges, 390729 markings/sec, 155 secs
lola: 71679904 markings, 250655045 edges, 411703 markings/sec, 160 secs
lola: 74080250 markings, 259102915 edges, 480069 markings/sec, 165 secs
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '\ufffd'
Aborted (core dumped)
FORMULA MAPK-PT-320-CTLCardinality-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA MAPK-PT-320-CTLCardinality-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="MAPK-PT-320"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/MAPK-PT-320.tgz
mv MAPK-PT-320 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is MAPK-PT-320, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r115-csrt-152666473700192"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;