Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......................
/home/mcc/execution
total 700K
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.1K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 118 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 356 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 10 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rwxr-xr-x 1 mcc users 522K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is HypertorusGrid-PT-d3k3p2b06, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r105-smll-152658635300149
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-00
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-01
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-02
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-03
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-04
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-05
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-06
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-07
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-08
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-09
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-10
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-11
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-12
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-13
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-14
FORMULA_NAME HypertorusGrid-PT-d3k3p2b06-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527374431938

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5157137172079229750.txt, -o, /tmp/graph5157137172079229750.bin, -w, /tmp/graph5157137172079229750.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5157137172079229750.bin, -l, -1, -v, -w, /tmp/graph5157137172079229750.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-00 with value :i7.u7.pb_d2_n1_1_2_1
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-01 with value :i24.u14.pb_d3_n2_2_2_2
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-02 with value :i16.u17.pb_d1_n2_2_3_2
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-03 with value :i26.u25.pb_d1_n1_3_3_2
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-04 with value :i25.u21.pb_d1_n2_3_2_1
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-05 with value :i3.u3.pb_d2_n1_2_1_3
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-06 with value :i16.u64.pil_d3_n1_2_3_2
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-07 with value :i9.u177.po_d3_n1_1_2_1
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-08 with value :i15.u75.pil_d1_n1_2_3_1
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-09 with value :i5.u5.pb_d3_n1_1_1_1
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-10 with value :i3.u33.pil_d1_n1_2_1_3
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-11 with value :i4.u36.pil_d1_n1_2_3_3
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-12 with value :i16.u143.pol_d3_n1_2_3_3
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-13 with value :i24.u168.po_d2_n1_2_3_2
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-14 with value :i21.u23.pbl_3_2_3
Read [bounds] property : HypertorusGrid-PT-d3k3p2b06-UpperBounds-15 with value :i21.u80.pil_d1_n1_3_2_3
built 108 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.
built 42 ordering constraints for composite.

BK_STOP 1527375528654

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 10:40:34 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 10:40:34 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 10:40:34 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 160 ms
May 26, 2018 10:40:34 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 513 places.
May 26, 2018 10:40:34 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 972 transitions.
May 26, 2018 10:40:34 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 49 ms
May 26, 2018 10:40:34 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 10:40:34 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 333 ms
May 26, 2018 10:40:35 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 180 ms
Begin: Sat May 26 22:40:35 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 22:40:35 2018
network size: 513 nodes, 3240 links, 1944 weight
quality increased from -0.00347222 to 0.489198
end computation: Sat May 26 22:40:35 2018
level 1:
start computation: Sat May 26 22:40:35 2018
network size: 189 nodes, 837 links, 1944 weight
quality increased from 0.489198 to 0.87963
end computation: Sat May 26 22:40:35 2018
level 2:
start computation: Sat May 26 22:40:35 2018
network size: 27 nodes, 189 links, 1944 weight
quality increased from 0.87963 to 0.87963
end computation: Sat May 26 22:40:35 2018
End: Sat May 26 22:40:35 2018
Total duration: 0 sec
0.87963
May 26, 2018 10:40:35 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 10:40:35 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 155 ms
May 26, 2018 10:40:35 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 10:40:36 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 1296 redundant transitions.
May 26, 2018 10:40:36 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 23 ms
May 26, 2018 10:40:36 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="HypertorusGrid-PT-d3k3p2b06"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/HypertorusGrid-PT-d3k3p2b06.tgz
mv HypertorusGrid-PT-d3k3p2b06 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is HypertorusGrid-PT-d3k3p2b06, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r105-smll-152658635300149"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;