Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 4.1M
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.5K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.4K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 111 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 349 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 4 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rwxr-xr-x 1 mcc users 3.9M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is HexagonalGrid-PT-816, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r105-smll-152658635200048
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME HexagonalGrid-PT-816-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527294997490

Flatten gal took : 1399 ms
Applied a total of 0 rules in 667 ms. Remains 3391 /3391 variables (removed 0) and now considering 6174/6174 (removed 0) transitions.
// Phase 1: matrix 6174 rows 3391 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5715455923347203812.txt, -o, /tmp/graph5715455923347203812.bin, -w, /tmp/graph5715455923347203812.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5715455923347203812.bin, -l, -1, -v, -w, /tmp/graph5715455923347203812.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 154 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 82 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 82 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 82 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 82 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
Compilation finished in 119059 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 113 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
sparsehash FATAL ERROR: failed to allocate 34 groups

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 12:36:39 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 12:36:39 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 12:36:39 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 385 ms
May 26, 2018 12:36:39 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 3391 places.
May 26, 2018 12:36:40 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 6174 transitions.
May 26, 2018 12:36:41 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1394 ms
May 26, 2018 12:36:41 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 100 ms
May 26, 2018 12:36:42 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 6174 transitions.
May 26, 2018 12:36:52 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 12:36:53 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 6174 transitions.
May 26, 2018 12:36:53 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (6174) to apply POR reductions. Disabling POR matrices.
May 26, 2018 12:36:53 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 910 ms
May 26, 2018 12:36:53 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 1121ms conformant to PINS in folder :/home/mcc/execution
May 26, 2018 12:36:54 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 754 ms
Begin: Sat May 26 00:36:54 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 00:36:54 2018
network size: 3391 nodes, 20820 links, 12348 weight
quality increased from -0.000539859 to 0.498322
end computation: Sat May 26 00:36:54 2018
level 1:
start computation: Sat May 26 00:36:54 2018
network size: 1273 nodes, 5509 links, 12348 weight
quality increased from 0.498322 to 0.919249
end computation: Sat May 26 00:36:54 2018
level 2:
start computation: Sat May 26 00:36:54 2018
network size: 169 nodes, 1093 links, 12348 weight
quality increased from 0.919249 to 0.934876
end computation: Sat May 26 00:36:54 2018
level 3:
start computation: Sat May 26 00:36:54 2018
network size: 44 nodes, 264 links, 12348 weight
quality increased from 0.934876 to 0.934876
end computation: Sat May 26 00:36:54 2018
End: Sat May 26 00:36:54 2018
Total duration: 0 sec
0.934876
May 26, 2018 12:36:55 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 12:36:55 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 618 ms
May 26, 2018 12:36:55 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 12:36:59 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 8112 redundant transitions.
May 26, 2018 12:36:59 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 77 ms
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="HexagonalGrid-PT-816"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/HexagonalGrid-PT-816.tgz
mv HexagonalGrid-PT-816 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is HexagonalGrid-PT-816, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r105-smll-152658635200048"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;