Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.....................
/home/mcc/execution
total 4.1M
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.9K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.5K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.4K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 111 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 349 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 4 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rwxr-xr-x 1 mcc users 3.9M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is HexagonalGrid-PT-816, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r105-smll-152658635200044
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-00
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-01
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-02
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-03
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-04
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-05
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-06
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-07
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-08
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-09
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-10
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-11
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-12
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-13
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-14
FORMULA_NAME HexagonalGrid-PT-816-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527292502880

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph5612807917182988290.txt, -o, /tmp/graph5612807917182988290.bin, -w, /tmp/graph5612807917182988290.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph5612807917182988290.bin, -l, -1, -v, -w, /tmp/graph5612807917182988290.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-00 with value :i7.u233.pi1_6_4
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-01 with value :i31.u96.pb6_2_5
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-02 with value :i15.u1096.po2_12_11
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-03 with value :i39.u336.pi2_8_11
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-04 with value :i32.u98.pb4_2_7
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-05 with value :i5.u1049.pol1_5_12
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-06 with value :i11.u871.pol2_7_4
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-07 with value :i41.u138.pb4_7_2
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-08 with value :i24.u913.pol3_13_3
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-09 with value :i42.u341.pil2_8_7
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-10 with value :i6.u668.pi3_6_1
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-11 with value :i30.u295.pil2_2_1
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-12 with value :i27.u560.pi2_15_2
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-13 with value :i10.u1154.pol2_8_7
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-14 with value :i14.u56.pb2_11_9
Read [bounds] property : HexagonalGrid-PT-816-UpperBounds-15 with value :i26.u639.pi3_13_9
built 160 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 196 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 158 ordering constraints for composite.
built 120 ordering constraints for composite.
built 120 ordering constraints for composite.
built 82 ordering constraints for composite.
built 120 ordering constraints for composite.
built 120 ordering constraints for composite.
built 120 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 196 ordering constraints for composite.
built 196 ordering constraints for composite.
built 82 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 158 ordering constraints for composite.
built 82 ordering constraints for composite.
built 158 ordering constraints for composite.
built 82 ordering constraints for composite.

BK_STOP 1527293610101

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 11:55:05 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 11:55:05 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 11:55:06 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 567 ms
May 25, 2018 11:55:06 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 3391 places.
May 25, 2018 11:55:06 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 6174 transitions.
May 25, 2018 11:55:07 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 11:55:08 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1629 ms
May 25, 2018 11:55:09 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 904 ms
Begin: Fri May 25 23:55:10 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 23:55:10 2018
network size: 3391 nodes, 20820 links, 12348 weight
quality increased from -0.000539859 to 0.498322
end computation: Fri May 25 23:55:10 2018
level 1:
start computation: Fri May 25 23:55:10 2018
network size: 1273 nodes, 5509 links, 12348 weight
quality increased from 0.498322 to 0.919249
end computation: Fri May 25 23:55:10 2018
level 2:
start computation: Fri May 25 23:55:10 2018
network size: 169 nodes, 1093 links, 12348 weight
quality increased from 0.919249 to 0.934837
end computation: Fri May 25 23:55:10 2018
level 3:
start computation: Fri May 25 23:55:10 2018
network size: 46 nodes, 274 links, 12348 weight
quality increased from 0.934837 to 0.934837
end computation: Fri May 25 23:55:10 2018
End: Fri May 25 23:55:10 2018
Total duration: 0 sec
0.934837
May 25, 2018 11:55:11 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 11:55:11 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 596 ms
May 25, 2018 11:55:11 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 11:55:14 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 8112 redundant transitions.
May 25, 2018 11:55:14 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 115 ms
May 25, 2018 11:55:14 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="HexagonalGrid-PT-816"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/HexagonalGrid-PT-816.tgz
mv HexagonalGrid-PT-816 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is HexagonalGrid-PT-816, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r105-smll-152658635200044"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;