MCC'2018 - Execution of r095-blw7-152650007300350

About the Execution of M4M.struct for GPPP-PT-C1000N0000000100

Execution Summary
Max Memory Used (MB)	Time wait (ms)	CPU Usage (ms)	I/O Wait (ms)	Computed Result	Execution Status
15919.270	1743330.00	3325942.00	6465.20	TFT???FF?FFT?F?T	normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.0K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-structural
Input is GPPP-PT-C1000N0000000100, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r095-blw7-152650007300350
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-00
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-01
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-02
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-03
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-04
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-05
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-06
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-07
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-08
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-09
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C1000N0000000100-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1527632329108

BK_STOP 1527634072438

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C1000N0000000100 as instance name.
Using GPPP as model name.
Using algorithm or tool decision-tree.
Model characteristics are: {'Examination': 'ReachabilityFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 1079072, 'Memory': 15952.75, 'Tool': 'lola'}, {'Time': 1117241, 'Memory': 15950.61, 'Tool': 'lola'}, {'Time': 1458121, 'Memory': 15936.73, 'Tool': 'marcie'}, {'Time': 1465424, 'Memory': 15936.86, 'Tool': 'marcie'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityFireability lola GPPP-PT-C1000N0000000100...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
GPPP-PT-C1000N0000000100: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete

checking for too many tokens
===========================================================================================
GPPP-PT-C1000N0000000100: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
ReachabilityFireability @ GPPP-PT-C1000N0000000100 @ 3540 seconds
----- Start make result stderr -----
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C1000N0000000100-ReachabilityFireability.task
lola: E (F (FIREABLE(Pyruvate_kinase))) : E (F (())) : A (G (())) : A (G ((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Glutathione_oxidation) OR NOT FIREABLE(generate) OR (FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Hexokinase) AND (FIREABLE(Ru5P_epimerase) OR FIREABLE(Lactate_dehydrogenase)) AND (FIREABLE(Phosphofructokinase) OR FIREABLE(TIM_forward)))))) : E (F ((FIREABLE(generate) AND FIREABLE(Phosphofructokinase) AND NOT FIREABLE(GAP_dehydrogenase)))) : E (F ((NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(TIM_backward) AND FIREABLE(Ru5P_epimerase) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(generate)) OR (FIREABLE(Ru5P_isomerase) AND FIREABLE(Glutathione_oxidation)))))) : A (G ((NOT FIREABLE(Transketolase2) OR NOT FIREABLE(Glutathione_oxidation) OR ((FIREABLE(Ru5P_isomerase) OR FIREABLE(Transketolase2)) AND NOT FIREABLE(Glutathione_oxidation)) OR FIREABLE(Phosphofructokinase)))) : E (F ((FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Hexokinase)))) : E (F ((FIREABLE(generate) AND FIREABLE(Pyruvate_kinase) AND ((NOT FIREABLE(TIM_backward) AND NOT FIREABLE(Phosphofructokinase)) OR (FIREABLE(Transketolase2) AND FIREABLE(GAP_dehydrogenase) AND FIREABLE(Phosphofructokinase) AND FIREABLE(Ru5P_epimerase)))))) : A (G (NOT FIREABLE(Enolase))) : E (F (((FIREABLE(Glutathione_oxidation) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(generate) AND FIREABLE(remove)) OR (FIREABLE(Phosphoglycerate_mutase) AND (FIREABLE(generate) OR FIREABLE(Transketolase1) OR FIREABLE(remove)))))) : E (F (FIREABLE(Enolase))) : E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase) AND (FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Transaldolase))))) : A (G (((NOT FIREABLE(Enolase) OR NOT FIREABLE(Phosphofructokinase)) AND NOT FIREABLE(Pyruvate_kinase)))) : E (F ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Phosphoglycerate_kinase) AND (FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Phosphoglycerate_kinase)) AND FIREABLE(Phosphofructokinase) AND FIREABLE(GAP_dehydrogenase) AND FIREABLE(Transketolase2) AND (NOT FIREABLE(TIM_forward) OR NOT FIREABLE(Lactate_dehydrogenase) OR FIREABLE(Glutathione_oxidation) OR FIREABLE(Ru5P_epimerase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Phosphoglycerate_mutase)))))) : E (F (FIREABLE(Pyruvate_kinase)))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Pyruvate_kinase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 18 markings, 17 edges
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: FALSE
lola: processed formula length: 5
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C1000N0000000100-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: preprocessing
lola: The net violates the given property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C1000N0000000100-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Glutathione_oxidation) OR NOT FIREABLE(generate) OR (FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Hexokinase) AND (FIREABLE(Ru5P_epimerase) OR FIREABLE(Lactate_dehydrogenase)) AND (FIREABLE(Phosphofructokinase) OR FIREABLE(TIM_forward))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 46 literals and 10 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-3.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-3.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4419400 markings, 9551751 edges, 883880 markings/sec, 0 secs
lola: sara is running 5 secs || 7865854 markings, 18967230 edges, 689291 markings/sec, 5 secs
lola: sara is running 10 secs || 10918859 markings, 28546607 edges, 610601 markings/sec, 10 secs
lola: sara is running 15 secs || 14531375 markings, 37599585 edges, 722503 markings/sec, 15 secs
lola: sara is running 20 secs || 17587939 markings, 46118830 edges, 611313 markings/sec, 20 secs
lola: sara is running 25 secs || 20272700 markings, 54709663 edges, 536952 markings/sec, 25 secs
lola: sara is running 30 secs || 23381741 markings, 63212879 edges, 621808 markings/sec, 30 secs
lola: sara is running 35 secs || 26085299 markings, 71780902 edges, 540712 markings/sec, 35 secs
lola: sara is running 40 secs || 28980638 markings, 80669969 edges, 579068 markings/sec, 40 secs
lola: sara is running 45 secs || 32843373 markings, 89157237 edges, 772547 markings/sec, 45 secs
lola: sara is running 50 secs || 35447745 markings, 97003095 edges, 520874 markings/sec, 50 secs
lola: sara is running 55 secs || 38008789 markings, 105180713 edges, 512209 markings/sec, 55 secs
lola: sara is running 60 secs || 40587128 markings, 113342361 edges, 515668 markings/sec, 60 secs
lola: sara is running 65 secs || 43246575 markings, 121158991 edges, 531889 markings/sec, 65 secs
lola: sara is running 70 secs || 45815289 markings, 129442579 edges, 513743 markings/sec, 70 secs
lola: sara is running 75 secs || 48827288 markings, 137659210 edges, 602400 markings/sec, 75 secs
lola: sara is running 80 secs || 51414277 markings, 145859172 edges, 517398 markings/sec, 80 secs
lola: sara is running 85 secs || 54048906 markings, 154209555 edges, 526926 markings/sec, 85 secs
lola: sara is running 90 secs || 56897874 markings, 163096572 edges, 569794 markings/sec, 90 secs
lola: sara is running 95 secs || 60592013 markings, 171232815 edges, 738828 markings/sec, 95 secs
lola: sara is running 100 secs || 63567677 markings, 179033154 edges, 595133 markings/sec, 100 secs
lola: sara is running 105 secs || 65980829 markings, 186721588 edges, 482630 markings/sec, 105 secs
lola: sara is running 110 secs || 68418432 markings, 194489543 edges, 487521 markings/sec, 110 secs
lola: sara is running 115 secs || 70925093 markings, 202474790 edges, 501332 markings/sec, 115 secs
lola: sara is running 120 secs || 73564066 markings, 210354246 edges, 527795 markings/sec, 120 secs
lola: sara is running 125 secs || 75893796 markings, 217570449 edges, 465946 markings/sec, 125 secs
lola: sara is running 130 secs || 78210644 markings, 225046490 edges, 463370 markings/sec, 130 secs
lola: sara is running 135 secs || 80862354 markings, 232694132 edges, 530342 markings/sec, 135 secs
lola: sara is running 140 secs || 83298585 markings, 240620784 edges, 487246 markings/sec, 140 secs
lola: sara is running 145 secs || 85850902 markings, 248891960 edges, 510463 markings/sec, 145 secs
lola: sara is running 150 secs || 88897168 markings, 257234385 edges, 609253 markings/sec, 150 secs
lola: sara is running 155 secs || 91467299 markings, 265382331 edges, 514026 markings/sec, 155 secs
lola: sara is running 160 secs || 94065043 markings, 273616839 edges, 519549 markings/sec, 160 secs
lola: sara is running 165 secs || 96696325 markings, 281956661 edges, 526256 markings/sec, 165 secs
lola: sara is running 170 secs || 99457561 markings, 290627207 edges, 552247 markings/sec, 170 secs
lola: sara is running 175 secs || 102904173 markings, 300444794 edges, 689322 markings/sec, 175 secs
lola: sara is running 180 secs || 106305415 markings, 310087174 edges, 680248 markings/sec, 180 secs
lola: sara is running 185 secs || 109676869 markings, 319655312 edges, 674291 markings/sec, 185 secs
lola: sara is running 190 secs || 112950145 markings, 328955748 edges, 654655 markings/sec, 190 secs
lola: sara is running 195 secs || 116229757 markings, 338272182 edges, 655922 markings/sec, 195 secs
lola: sara is running 200 secs || 119480724 markings, 347507005 edges, 650193 markings/sec, 200 secs
lola: sara is running 205 secs || 122711548 markings, 356689863 edges, 646165 markings/sec, 205 secs
lola: sara is running 210 secs || 125903930 markings, 365769644 edges, 638476 markings/sec, 210 secs
lola: sara is running 215 secs || 128997964 markings, 374570054 edges, 618807 markings/sec, 215 secs
lola: sara is running 220 secs || 132056777 markings, 383272737 edges, 611763 markings/sec, 220 secs
lola: sara is running 225 secs || 134979227 markings, 391574188 edges, 584490 markings/sec, 225 secs
lola: sara is running 230 secs || 137942456 markings, 400009788 edges, 592646 markings/sec, 230 secs
lola: sara is running 235 secs || 140761715 markings, 408012285 edges, 563852 markings/sec, 235 secs
lola: sara is running 240 secs || 143561661 markings, 415987459 edges, 559989 markings/sec, 240 secs
lola: sara is running 245 secs || 146386798 markings, 424040480 edges, 565027 markings/sec, 245 secs
lola: sara is running 250 secs || 149052883 markings, 431603408 edges, 533217 markings/sec, 250 secs
lola: sara is running 255 secs || 151781811 markings, 439368770 edges, 545786 markings/sec, 255 secs
lola: sara is running 260 secs || 154506033 markings, 447154575 edges, 544844 markings/sec, 260 secs
lola: sara is running 265 secs || 157109771 markings, 454544579 edges, 520748 markings/sec, 265 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 4 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(generate) AND FIREABLE(Phosphofructokinase) AND NOT FIREABLE(GAP_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 16 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-4.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-4.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4725562 markings, 10215335 edges, 945112 markings/sec, 0 secs
lola: sara is running 5 secs || 8784275 markings, 20192787 edges, 811743 markings/sec, 5 secs
lola: sara is running 10 secs || 12677974 markings, 30321263 edges, 778740 markings/sec, 10 secs
lola: sara is running 15 secs || 16616238 markings, 40091119 edges, 787653 markings/sec, 15 secs
lola: sara is running 20 secs || 20177638 markings, 48950694 edges, 712280 markings/sec, 20 secs
lola: sara is running 25 secs || 23659400 markings, 57617767 edges, 696352 markings/sec, 25 secs
lola: sara is running 30 secs || 27104231 markings, 66201633 edges, 688966 markings/sec, 30 secs
lola: sara is running 35 secs || 30510303 markings, 74681028 edges, 681214 markings/sec, 35 secs
lola: sara is running 40 secs || 33884072 markings, 83102961 edges, 674754 markings/sec, 40 secs
lola: sara is running 45 secs || 37245582 markings, 91495334 edges, 672302 markings/sec, 45 secs
lola: sara is running 50 secs || 40590323 markings, 99798665 edges, 668948 markings/sec, 50 secs
lola: sara is running 55 secs || 43934243 markings, 108153913 edges, 668784 markings/sec, 55 secs
lola: sara is running 60 secs || 47269256 markings, 116462629 edges, 667003 markings/sec, 60 secs
lola: sara is running 65 secs || 50590057 markings, 124747980 edges, 664160 markings/sec, 65 secs
lola: sara is running 70 secs || 53830366 markings, 132803743 edges, 648062 markings/sec, 70 secs
lola: sara is running 75 secs || 57105905 markings, 140971192 edges, 655108 markings/sec, 75 secs
lola: sara is running 80 secs || 60364584 markings, 149095745 edges, 651736 markings/sec, 80 secs
lola: sara is running 85 secs || 63620052 markings, 157231663 edges, 651094 markings/sec, 85 secs
lola: sara is running 90 secs || 66885728 markings, 165357247 edges, 653135 markings/sec, 90 secs
lola: sara is running 95 secs || 70170193 markings, 173548751 edges, 656893 markings/sec, 95 secs
lola: sara is running 100 secs || 73458931 markings, 181751244 edges, 657748 markings/sec, 100 secs
lola: sara is running 105 secs || 76723161 markings, 189892367 edges, 652846 markings/sec, 105 secs
lola: sara is running 110 secs || 79994654 markings, 198051157 edges, 654299 markings/sec, 110 secs
lola: sara is running 115 secs || 83264998 markings, 206207559 edges, 654069 markings/sec, 115 secs
lola: sara is running 120 secs || 86531260 markings, 214413898 edges, 653252 markings/sec, 120 secs
lola: sara is running 125 secs || 89830023 markings, 222582729 edges, 659753 markings/sec, 125 secs
lola: sara is running 130 secs || 93056421 markings, 230697686 edges, 645280 markings/sec, 130 secs
lola: sara is running 135 secs || 96369373 markings, 238894687 edges, 662590 markings/sec, 135 secs
lola: sara is running 140 secs || 99697908 markings, 247198600 edges, 665707 markings/sec, 140 secs
lola: sara is running 145 secs || 102982439 markings, 255394370 edges, 656906 markings/sec, 145 secs
lola: sara is running 150 secs || 106231991 markings, 263540786 edges, 649910 markings/sec, 150 secs
lola: sara is running 155 secs || 109488902 markings, 271673558 edges, 651382 markings/sec, 155 secs
lola: sara is running 160 secs || 112776289 markings, 279860415 edges, 657477 markings/sec, 160 secs
lola: sara is running 165 secs || 116075748 markings, 288058069 edges, 659892 markings/sec, 165 secs
lola: sara is running 170 secs || 119357260 markings, 296244475 edges, 656302 markings/sec, 170 secs
lola: sara is running 175 secs || 122628893 markings, 304406877 edges, 654327 markings/sec, 175 secs
lola: sara is running 180 secs || 125894702 markings, 312563263 edges, 653162 markings/sec, 180 secs
lola: sara is running 185 secs || 129224492 markings, 320886946 edges, 665958 markings/sec, 185 secs
lola: sara is running 190 secs || 132526146 markings, 329100202 edges, 660331 markings/sec, 190 secs
lola: sara is running 195 secs || 135806773 markings, 337329026 edges, 656125 markings/sec, 195 secs
lola: sara is running 200 secs || 139180293 markings, 345704464 edges, 674704 markings/sec, 200 secs
lola: sara is running 205 secs || 142542674 markings, 354092822 edges, 672476 markings/sec, 205 secs
lola: sara is running 210 secs || 145986997 markings, 362690019 edges, 688865 markings/sec, 210 secs
lola: sara is running 215 secs || 149349114 markings, 371077341 edges, 672423 markings/sec, 215 secs
lola: sara is running 220 secs || 152730516 markings, 379751110 edges, 676280 markings/sec, 220 secs
lola: sara is running 225 secs || 155864014 markings, 387585559 edges, 626700 markings/sec, 225 secs
lola: sara is running 230 secs || 159115681 markings, 395714486 edges, 650333 markings/sec, 230 secs
lola: sara is running 235 secs || 162254683 markings, 403562647 edges, 627800 markings/sec, 235 secs
lola: sara is running 240 secs || 165462976 markings, 411583594 edges, 641659 markings/sec, 240 secs
lola: sara is running 245 secs || 168693745 markings, 419661235 edges, 646154 markings/sec, 245 secs
lola: sara is running 250 secs || 171878583 markings, 427623755 edges, 636968 markings/sec, 250 secs
lola: sara is running 255 secs || 175040895 markings, 435529180 edges, 632462 markings/sec, 255 secs
lola: sara is running 260 secs || 178248113 markings, 443548532 edges, 641444 markings/sec, 260 secs
lola: sara is running 265 secs || 178399581 markings, 443927187 edges, 30294 markings/sec, 265 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 5 will run for 271 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(TIM_backward) AND FIREABLE(Ru5P_epimerase) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(generate)) OR (FIREABLE(Ru5P_isomerase) AND FIREABLE(Glutathione_oxidation))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 14 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-5.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-5.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 3185905 markings, 8216004 edges, 637181 markings/sec, 0 secs
lola: sara is running 5 secs || 6315333 markings, 16668938 edges, 625886 markings/sec, 5 secs
lola: sara is running 10 secs || 9278362 markings, 24816050 edges, 592606 markings/sec, 10 secs
lola: sara is running 15 secs || 12147992 markings, 32869350 edges, 573926 markings/sec, 15 secs
lola: sara is running 20 secs || 15027404 markings, 40900026 edges, 575882 markings/sec, 20 secs
lola: sara is running 25 secs || 17900387 markings, 48855195 edges, 574597 markings/sec, 25 secs
lola: sara is running 30 secs || 20624013 markings, 56657523 edges, 544725 markings/sec, 30 secs
lola: sara is running 35 secs || 23495300 markings, 64539922 edges, 574257 markings/sec, 35 secs
lola: sara is running 40 secs || 26202821 markings, 72280013 edges, 541504 markings/sec, 40 secs
lola: sara is running 45 secs || 28957769 markings, 80062226 edges, 550990 markings/sec, 45 secs
lola: sara is running 50 secs || 31686925 markings, 87866802 edges, 545831 markings/sec, 50 secs
lola: sara is running 55 secs || 34405073 markings, 95597856 edges, 543630 markings/sec, 55 secs
lola: sara is running 60 secs || 37125037 markings, 103297663 edges, 543993 markings/sec, 60 secs
lola: sara is running 65 secs || 39823547 markings, 110889665 edges, 539702 markings/sec, 65 secs
lola: sara is running 70 secs || 42530329 markings, 118521599 edges, 541356 markings/sec, 70 secs
lola: sara is running 75 secs || 45210778 markings, 126117870 edges, 536090 markings/sec, 75 secs
lola: sara is running 80 secs || 47929280 markings, 133728065 edges, 543700 markings/sec, 80 secs
lola: sara is running 85 secs || 50583415 markings, 141320338 edges, 530827 markings/sec, 85 secs
lola: sara is running 90 secs || 53114041 markings, 148751026 edges, 506125 markings/sec, 90 secs
lola: sara is running 95 secs || 55832462 markings, 156366286 edges, 543684 markings/sec, 95 secs
lola: sara is running 100 secs || 58568322 markings, 163996319 edges, 547172 markings/sec, 100 secs
lola: sara is running 105 secs || 61050576 markings, 171329506 edges, 496451 markings/sec, 105 secs
lola: sara is running 110 secs || 63681470 markings, 178783629 edges, 526179 markings/sec, 110 secs
lola: sara is running 115 secs || 66420570 markings, 186358484 edges, 547820 markings/sec, 115 secs
lola: sara is running 120 secs || 68835395 markings, 193614820 edges, 482965 markings/sec, 120 secs
lola: sara is running 125 secs || 71567276 markings, 201192069 edges, 546376 markings/sec, 125 secs
lola: sara is running 130 secs || 74147230 markings, 208600904 edges, 515991 markings/sec, 130 secs
lola: sara is running 135 secs || 76645603 markings, 215824758 edges, 499675 markings/sec, 135 secs
lola: sara is running 140 secs || 79377020 markings, 223369577 edges, 546283 markings/sec, 140 secs
lola: sara is running 145 secs || 81891993 markings, 230779679 edges, 502995 markings/sec, 145 secs
lola: sara is running 150 secs || 84696916 markings, 238611600 edges, 560985 markings/sec, 150 secs
lola: sara is running 155 secs || 87184299 markings, 246052261 edges, 497477 markings/sec, 155 secs
lola: sara is running 160 secs || 90013456 markings, 253859675 edges, 565831 markings/sec, 160 secs
lola: sara is running 165 secs || 92460661 markings, 261221581 edges, 489441 markings/sec, 165 secs
lola: sara is running 170 secs || 95263853 markings, 268909484 edges, 560638 markings/sec, 170 secs
lola: sara is running 175 secs || 97671228 markings, 276131070 edges, 481475 markings/sec, 175 secs
lola: sara is running 180 secs || 100493309 markings, 283865695 edges, 564416 markings/sec, 180 secs
lola: sara is running 185 secs || 102945137 markings, 291188718 edges, 490366 markings/sec, 185 secs
lola: sara is running 190 secs || 105737623 markings, 298854278 edges, 558497 markings/sec, 190 secs
lola: sara is running 195 secs || 108190831 markings, 306147726 edges, 490642 markings/sec, 195 secs
lola: sara is running 200 secs || 110920174 markings, 313743658 edges, 545869 markings/sec, 200 secs
lola: sara is running 205 secs || 113375971 markings, 321038440 edges, 491159 markings/sec, 205 secs
lola: sara is running 210 secs || 115973740 markings, 328535035 edges, 519554 markings/sec, 210 secs
lola: sara is running 215 secs || 118588277 markings, 335879542 edges, 522907 markings/sec, 215 secs
lola: sara is running 220 secs || 120955521 markings, 342982393 edges, 473449 markings/sec, 220 secs
lola: sara is running 225 secs || 123749574 markings, 350541509 edges, 558811 markings/sec, 225 secs
lola: sara is running 230 secs || 126178655 markings, 357812750 edges, 485816 markings/sec, 230 secs
lola: sara is running 235 secs || 128823214 markings, 365356466 edges, 528912 markings/sec, 235 secs
lola: sara is running 240 secs || 131411428 markings, 372722542 edges, 517643 markings/sec, 240 secs
lola: sara is running 245 secs || 133785570 markings, 379844129 edges, 474828 markings/sec, 245 secs
lola: sara is running 250 secs || 136581290 markings, 387354368 edges, 559144 markings/sec, 250 secs
lola: sara is running 255 secs || 138982707 markings, 394616449 edges, 480283 markings/sec, 255 secs
lola: sara is running 260 secs || 141503776 markings, 402024103 edges, 504214 markings/sec, 260 secs
lola: sara is running 265 secs || 144221184 markings, 409430595 edges, 543482 markings/sec, 265 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 6 will run for 271 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Transketolase2) OR NOT FIREABLE(Glutathione_oxidation) OR ((FIREABLE(Ru5P_isomerase) OR FIREABLE(Transketolase2)) AND NOT FIREABLE(Glutathione_oxidation)) OR FIREABLE(Phosphofructokinase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 10 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-6.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 412 markings, 411 edges
lola: ========================================
lola: subprocess 7 will run for 302 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Hexokinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 3 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-7.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-7.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 8 will run for 339 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(generate) AND FIREABLE(Pyruvate_kinase) AND ((NOT FIREABLE(TIM_backward) AND NOT FIREABLE(Phosphofructokinase)) OR (FIREABLE(Transketolase2) AND FIREABLE(GAP_dehydrogenase) AND FIREABLE(Phosphofructokinase) AND FIREABLE(Ru5P_epimerase))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 23 literals and 3 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-8.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-8.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4504631 markings, 9293773 edges, 900926 markings/sec, 0 secs
lola: sara is running 5 secs || 9737494 markings, 18219776 edges, 1046573 markings/sec, 5 secs
lola: sara is running 10 secs || 13906796 markings, 26348034 edges, 833860 markings/sec, 10 secs
lola: sara is running 15 secs || 18709324 markings, 34111269 edges, 960506 markings/sec, 15 secs
lola: sara is running 20 secs || 22394061 markings, 41394072 edges, 736947 markings/sec, 20 secs
lola: sara is running 25 secs || 26380364 markings, 49448302 edges, 797261 markings/sec, 25 secs
lola: sara is running 30 secs || 30978152 markings, 56994242 edges, 919558 markings/sec, 30 secs
lola: sara is running 35 secs || 34475414 markings, 64144485 edges, 699452 markings/sec, 35 secs
lola: sara is running 40 secs || 39092889 markings, 71602246 edges, 923495 markings/sec, 40 secs
lola: sara is running 45 secs || 43633402 markings, 79036911 edges, 908103 markings/sec, 45 secs
lola: sara is running 50 secs || 47611361 markings, 86728865 edges, 795592 markings/sec, 50 secs
lola: sara is running 55 secs || 51297162 markings, 94806775 edges, 737160 markings/sec, 55 secs
lola: sara is running 60 secs || 55701171 markings, 102400223 edges, 880802 markings/sec, 60 secs
lola: sara is running 65 secs || 58602811 markings, 109317498 edges, 580328 markings/sec, 65 secs
lola: sara is running 70 secs || 62748839 markings, 116632045 edges, 829206 markings/sec, 70 secs
lola: sara is running 75 secs || 67089243 markings, 123841923 edges, 868081 markings/sec, 75 secs
lola: sara is running 80 secs || 70732495 markings, 130616561 edges, 728650 markings/sec, 80 secs
lola: sara is running 85 secs || 73124257 markings, 137667741 edges, 478352 markings/sec, 85 secs
lola: sara is running 90 secs || 76819155 markings, 144726600 edges, 738980 markings/sec, 90 secs
lola: sara is running 95 secs || 80964485 markings, 152597448 edges, 829066 markings/sec, 95 secs
lola: sara is running 100 secs || 84413928 markings, 160308744 edges, 689889 markings/sec, 100 secs
lola: sara is running 105 secs || 88603614 markings, 167507009 edges, 837937 markings/sec, 105 secs
lola: sara is running 110 secs || 91770985 markings, 174541270 edges, 633474 markings/sec, 110 secs
lola: sara is running 115 secs || 95791375 markings, 181840805 edges, 804078 markings/sec, 115 secs
lola: sara is running 120 secs || 100012390 markings, 188646480 edges, 844203 markings/sec, 120 secs
lola: sara is running 125 secs || 103096288 markings, 195053122 edges, 616780 markings/sec, 125 secs
lola: sara is running 130 secs || 105369187 markings, 201751726 edges, 454580 markings/sec, 130 secs
lola: sara is running 135 secs || 109998743 markings, 209509139 edges, 925911 markings/sec, 135 secs
lola: sara is running 140 secs || 113983661 markings, 216693742 edges, 796984 markings/sec, 140 secs
lola: sara is running 145 secs || 117798030 markings, 223587435 edges, 762874 markings/sec, 145 secs
lola: sara is running 150 secs || 122239441 markings, 230918073 edges, 888282 markings/sec, 150 secs
lola: sara is running 155 secs || 126687011 markings, 238332194 edges, 889514 markings/sec, 155 secs
lola: sara is running 160 secs || 131007088 markings, 245301744 edges, 864015 markings/sec, 160 secs
lola: sara is running 165 secs || 134939045 markings, 251859987 edges, 786391 markings/sec, 165 secs
lola: sara is running 170 secs || 138473121 markings, 258600812 edges, 706815 markings/sec, 170 secs
lola: sara is running 175 secs || 142073301 markings, 265572150 edges, 720036 markings/sec, 175 secs
lola: sara is running 180 secs || 145669804 markings, 273415513 edges, 719301 markings/sec, 180 secs
lola: sara is running 185 secs || 150073753 markings, 280878851 edges, 880790 markings/sec, 185 secs
lola: sara is running 190 secs || 153012048 markings, 287771795 edges, 587659 markings/sec, 190 secs
lola: sara is running 195 secs || 157117239 markings, 295066097 edges, 821038 markings/sec, 195 secs
lola: sara is running 200 secs || 161311513 markings, 301971050 edges, 838855 markings/sec, 200 secs
lola: sara is running 205 secs || 164721979 markings, 308352060 edges, 682093 markings/sec, 205 secs
lola: sara is running 210 secs || 166978102 markings, 314999548 edges, 451225 markings/sec, 210 secs
lola: sara is running 215 secs || 170930791 markings, 322164330 edges, 790538 markings/sec, 215 secs
lola: sara is running 220 secs || 175154136 markings, 328960607 edges, 844669 markings/sec, 220 secs
lola: sara is running 225 secs || 179010056 markings, 335391408 edges, 771184 markings/sec, 225 secs
lola: sara is running 230 secs || 182260001 markings, 341569901 edges, 649989 markings/sec, 230 secs
lola: sara is running 235 secs || 183602487 markings, 343989080 edges, 268497 markings/sec, 235 secs
lola: lola: Child process aborted or communication problem between parent and child process
lola: subprocess 9 will run for 352 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (NOT FIREABLE(Enolase)))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 17 markings, 16 edges
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-9.sara
lola: subprocess 10 will run for 411 seconds at most (--localtimelimit=-1)
lola: lola: ========================================state equation: calling and running sara

lola: ...considering subproblem: E (F (((FIREABLE(Glutathione_oxidation) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(generate) AND FIREABLE(remove)) OR (FIREABLE(Phosphoglycerate_mutase) AND (FIREABLE(generate) OR FIREABLE(Transketolase1) OR FIREABLE(remove))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 15 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-10.sara
lola: state equation: calling and running sara
lola: ========================================
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-10.sara.
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-9.sara.
sara: place or transition ordering is non-deterministic
sara: place or transition ordering is non-deterministic

lola: sara is running 0 secs || 2783926 markings, 8759299 edges, 556785 markings/sec, 0 secs
lola: sara is running 5 secs || 5563387 markings, 17605677 edges, 555892 markings/sec, 5 secs
lola: sara is running 10 secs || 8252206 markings, 26217778 edges, 537764 markings/sec, 10 secs
lola: sara is running 15 secs || 10941595 markings, 34747608 edges, 537878 markings/sec, 15 secs
lola: sara is running 20 secs || 13556108 markings, 43113945 edges, 522903 markings/sec, 20 secs
lola: sara is running 25 secs || 16126327 markings, 51396871 edges, 514044 markings/sec, 25 secs
lola: sara is running 30 secs || 18754283 markings, 59726094 edges, 525591 markings/sec, 30 secs
lola: sara is running 35 secs || 21238187 markings, 67739410 edges, 496781 markings/sec, 35 secs
lola: sara is running 40 secs || 23729491 markings, 75782255 edges, 498261 markings/sec, 40 secs
lola: sara is running 45 secs || 26208236 markings, 83748268 edges, 495749 markings/sec, 45 secs
lola: sara is running 50 secs || 28793994 markings, 91964831 edges, 517152 markings/sec, 50 secs
lola: sara is running 55 secs || 31316965 markings, 100056029 edges, 504594 markings/sec, 55 secs

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 11 will run for 481 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Enolase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-11.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 17 markings, 16 edges
lola: ========================================
lola: subprocess 12 will run for 601 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase) AND (FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Transaldolase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 21 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-12.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-12.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4524584 markings, 9157088 edges, 904917 markings/sec, 0 secs
lola: sara is running 5 secs || 8826907 markings, 17476967 edges, 860465 markings/sec, 5 secs
lola: sara is running 10 secs || 12387920 markings, 26040407 edges, 712203 markings/sec, 10 secs
lola: sara is running 15 secs || 16461784 markings, 34141111 edges, 814773 markings/sec, 15 secs
lola: sara is running 20 secs || 20368017 markings, 42310359 edges, 781247 markings/sec, 20 secs
lola: sara is running 25 secs || 23919266 markings, 50264236 edges, 710250 markings/sec, 25 secs
lola: sara is running 30 secs || 28163838 markings, 58300402 edges, 848914 markings/sec, 30 secs
lola: sara is running 35 secs || 31661089 markings, 66362609 edges, 699450 markings/sec, 35 secs
lola: sara is running 40 secs || 35850689 markings, 74301297 edges, 837920 markings/sec, 40 secs
lola: sara is running 45 secs || 39184101 markings, 82307587 edges, 666682 markings/sec, 45 secs
lola: sara is running 50 secs || 43359105 markings, 90255787 edges, 835001 markings/sec, 50 secs
lola: sara is running 55 secs || 46994223 markings, 98184028 edges, 727024 markings/sec, 55 secs
lola: sara is running 60 secs || 50668708 markings, 106041544 edges, 734897 markings/sec, 60 secs
lola: sara is running 65 secs || 54791680 markings, 113917564 edges, 824594 markings/sec, 65 secs
lola: sara is running 70 secs || 58022520 markings, 122028478 edges, 646168 markings/sec, 70 secs
lola: sara is running 75 secs || 61911681 markings, 129778502 edges, 777832 markings/sec, 75 secs
lola: sara is running 80 secs || 66072344 markings, 137545684 edges, 832133 markings/sec, 80 secs
lola: sara is running 85 secs || 69184537 markings, 145706258 edges, 622439 markings/sec, 85 secs
lola: sara is running 90 secs || 73021495 markings, 153380349 edges, 767392 markings/sec, 90 secs
lola: sara is running 95 secs || 77133389 markings, 161159856 edges, 822379 markings/sec, 95 secs
lola: sara is running 100 secs || 80483786 markings, 169196995 edges, 670079 markings/sec, 100 secs
lola: sara is running 105 secs || 83907127 markings, 176849850 edges, 684668 markings/sec, 105 secs
lola: sara is running 110 secs || 88039452 markings, 184759873 edges, 826465 markings/sec, 110 secs
lola: sara is running 115 secs || 91977331 markings, 192549255 edges, 787576 markings/sec, 115 secs
lola: sara is running 120 secs || 95002432 markings, 200611333 edges, 605020 markings/sec, 120 secs
lola: sara is running 125 secs || 98804636 markings, 208230176 edges, 760441 markings/sec, 125 secs
lola: sara is running 130 secs || 102928527 markings, 216000932 edges, 824778 markings/sec, 130 secs
lola: sara is running 135 secs || 106557272 markings, 223944666 edges, 725749 markings/sec, 135 secs
lola: sara is running 140 secs || 109567304 markings, 231825584 edges, 602006 markings/sec, 140 secs
lola: sara is running 145 secs || 113462128 markings, 239477355 edges, 778965 markings/sec, 145 secs
lola: sara is running 150 secs || 117614876 markings, 247242295 edges, 830550 markings/sec, 150 secs
lola: sara is running 155 secs || 121325129 markings, 255174826 edges, 742051 markings/sec, 155 secs
lola: sara is running 160 secs || 124340716 markings, 263206489 edges, 603117 markings/sec, 160 secs
lola: sara is running 165 secs || 128003950 markings, 270577141 edges, 732647 markings/sec, 165 secs
lola: sara is running 170 secs || 132101391 markings, 278496339 edges, 819488 markings/sec, 170 secs
lola: sara is running 175 secs || 136258686 markings, 286166467 edges, 831459 markings/sec, 175 secs
lola: sara is running 180 secs || 139157545 markings, 294356881 edges, 579772 markings/sec, 180 secs
lola: sara is running 185 secs || 142119116 markings, 301161185 edges, 592314 markings/sec, 185 secs
lola: sara is running 190 secs || 146134345 markings, 309007795 edges, 803046 markings/sec, 190 secs
lola: sara is running 195 secs || 150275082 markings, 316743196 edges, 828147 markings/sec, 195 secs
lola: sara is running 200 secs || 154002115 markings, 324602639 edges, 745407 markings/sec, 200 secs
lola: sara is running 205 secs || 156910916 markings, 332777783 edges, 581760 markings/sec, 205 secs
lola: sara is running 210 secs || 160177115 markings, 339830298 edges, 653240 markings/sec, 210 secs
lola: sara is running 215 secs || 164310163 markings, 347769877 edges, 826610 markings/sec, 215 secs
lola: sara is running 220 secs || 168436592 markings, 355476009 edges, 825286 markings/sec, 220 secs
lola: sara is running 225 secs || 172084445 markings, 363314770 edges, 729571 markings/sec, 225 secs
lola: sara is running 230 secs || 174968136 markings, 371427438 edges, 576738 markings/sec, 230 secs
lola: sara is running 235 secs || 178241912 markings, 378428360 edges, 654755 markings/sec, 235 secs
lola: sara is running 240 secs || 182293033 markings, 386265423 edges, 810224 markings/sec, 240 secs
lola: sara is running 245 secs || 186390694 markings, 393916319 edges, 819532 markings/sec, 245 secs
lola: sara is running 250 secs || 190281642 markings, 401645927 edges, 778190 markings/sec, 250 secs
lola: sara is running 255 secs || 193142526 markings, 409759384 edges, 572177 markings/sec, 255 secs
lola: sara is running 260 secs || 196237954 markings, 417049766 edges, 619086 markings/sec, 260 secs
lola: sara is running 265 secs || 196253833 markings, 417082197 edges, 3176 markings/sec, 265 secs
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 13 will run for 710 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Enolase) OR NOT FIREABLE(Phosphofructokinase)) AND NOT FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 214 markings, 213 edges
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-13.sara
lola: ========================================
lola: subprocess 14 will run for 1065 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Phosphoglycerate_kinase) AND (FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Phosphoglycerate_kinase)) AND FIREABLE(Phosphofructokinase) AND FIREABLE(GAP_dehydrogenase) AND FIREABLE(Transketolase2) AND (NOT FIREABLE(TIM_forward) OR NOT FIREABLE(Lactate_dehydrogenase) OR FIREABLE(Glutathione_oxidation) OR FIREABLE(Ru5P_epimerase) OR (FIREABLE(GAP_d... (shortened)
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 190 literals and 12 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000000100-ReachabilityFireability-14.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000000100-ReachabilityFireability-14.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4578730 markings, 9429886 edges, 915746 markings/sec, 0 secs
lola: sara is running 5 secs || 9160301 markings, 18905515 edges, 916314 markings/sec, 5 secs
lola: sara is running 10 secs || 13667879 markings, 28237550 edges, 901516 markings/sec, 10 secs
lola: sara is running 15 secs || 18179660 markings, 37598167 edges, 902356 markings/sec, 15 secs
lola: sara is running 20 secs || 22676981 markings, 46939525 edges, 899464 markings/sec, 20 secs
lola: sara is running 25 secs || 27036245 markings, 55993829 edges, 871853 markings/sec, 25 secs
lola: sara is running 30 secs || 30610275 markings, 64587223 edges, 714806 markings/sec, 30 secs
lola: sara is running 35 secs || 34196860 markings, 73487274 edges, 717317 markings/sec, 35 secs
lola: sara is running 40 secs || 37732343 markings, 82263137 edges, 707097 markings/sec, 40 secs
lola: sara is running 45 secs || 41260315 markings, 91020373 edges, 705594 markings/sec, 45 secs
lola: sara is running 50 secs || 44792058 markings, 99788542 edges, 706349 markings/sec, 50 secs
lola: sara is running 55 secs || 48329699 markings, 108573589 edges, 707528 markings/sec, 55 secs
lola: sara is running 60 secs || 51889837 markings, 117417314 edges, 712028 markings/sec, 60 secs
lola: sara is running 65 secs || 55484134 markings, 126343632 edges, 718859 markings/sec, 65 secs
lola: sara is running 70 secs || 59116344 markings, 135371041 edges, 726442 markings/sec, 70 secs
lola: sara is running 75 secs || 62780597 markings, 144476522 edges, 732851 markings/sec, 75 secs
lola: sara is running 80 secs || 66464345 markings, 153632447 edges, 736750 markings/sec, 80 secs
lola: sara is running 85 secs || 70174245 markings, 162821213 edges, 741980 markings/sec, 85 secs
lola: sara is running 90 secs || 73721499 markings, 171506933 edges, 709451 markings/sec, 90 secs
lola: sara is running 95 secs || 77241351 markings, 180131216 edges, 703970 markings/sec, 95 secs
lola: sara is running 100 secs || 80723060 markings, 188663704 edges, 696342 markings/sec, 100 secs
lola: sara is running 105 secs || 84206069 markings, 197200786 edges, 696602 markings/sec, 105 secs
lola: sara is running 110 secs || 87706034 markings, 205784260 edges, 699993 markings/sec, 110 secs
lola: sara is running 115 secs || 91241038 markings, 214459003 edges, 707001 markings/sec, 115 secs
lola: sara is running 120 secs || 94795697 markings, 223184031 edges, 710932 markings/sec, 120 secs
lola: sara is running 125 secs || 98362263 markings, 231937797 edges, 713313 markings/sec, 125 secs
lola: sara is running 130 secs || 102005339 markings, 240544379 edges, 728615 markings/sec, 130 secs
lola: sara is running 135 secs || 104990513 markings, 248132741 edges, 597035 markings/sec, 135 secs
lola: sara is running 140 secs || 108094246 markings, 256845812 edges, 620747 markings/sec, 140 secs
lola: sara is running 145 secs || 111214888 markings, 265548953 edges, 624128 markings/sec, 145 secs
lola: sara is running 150 secs || 114309568 markings, 274146401 edges, 618936 markings/sec, 150 secs
lola: sara is running 155 secs || 117369006 markings, 282692230 edges, 611888 markings/sec, 155 secs
lola: sara is running 160 secs || 120410773 markings, 291183220 edges, 608353 markings/sec, 160 secs
lola: sara is running 165 secs || 123433085 markings, 299590090 edges, 604462 markings/sec, 165 secs
lola: sara is running 170 secs || 126422377 markings, 307967197 edges, 597858 markings/sec, 170 secs
lola: sara is running 175 secs || 129436510 markings, 316362864 edges, 602827 markings/sec, 175 secs
lola: sara is running 180 secs || 132424071 markings, 324709349 edges, 597512 markings/sec, 180 secs
lola: sara is running 185 secs || 135430615 markings, 333066967 edges, 601309 markings/sec, 185 secs
lola: sara is running 190 secs || 138419839 markings, 341427015 edges, 597845 markings/sec, 190 secs
lola: sara is running 195 secs || 141441205 markings, 349846237 edges, 604273 markings/sec, 195 secs
lola: sara is running 200 secs || 144414646 markings, 358198961 edges, 594688 markings/sec, 200 secs
lola: sara is running 205 secs || 147394853 markings, 366546615 edges, 596041 markings/sec, 205 secs
lola: sara is running 210 secs || 150395315 markings, 374926287 edges, 600092 markings/sec, 210 secs
lola: sara is running 215 secs || 153389869 markings, 383258629 edges, 598911 markings/sec, 215 secs
lola: sara is running 220 secs || 156390012 markings, 391581223 edges, 600029 markings/sec, 220 secs
lola: sara is running 225 secs || 159385450 markings, 400001254 edges, 599088 markings/sec, 225 secs
lola: sara is running 230 secs || 162379972 markings, 408401091 edges, 598904 markings/sec, 230 secs
lola: sara is running 235 secs || 165370518 markings, 416768037 edges, 598109 markings/sec, 235 secs
lola: sara is running 240 secs || 168382278 markings, 425179641 edges, 602352 markings/sec, 240 secs
lola: sara is running 245 secs || 171417907 markings, 433642525 edges, 607126 markings/sec, 245 secs
lola: sara is running 250 secs || 174441573 markings, 442047125 edges, 604733 markings/sec, 250 secs
lola: sara is running 255 secs || 175128890 markings, 443941147 edges, 137463 markings/sec, 255 secs
lola: sara is running 260 secs || 175128907 markings, 443941184 edges, 3 markings/sec, 260 secs
lola: sara is running 265 secs || 175133222 markings, 443953898 edges, 863 markings/sec, 265 secs
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 15 will run for 1840 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Pyruvate_kinase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 18 markings, 17 edges
lola: RESULT
lola:
SUMMARY: yes no yes unknown unknown unknown no no unknown no no yes unknown no unknown yes
lola: ========================================
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-1 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-2 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-6 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-7 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-9 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-11 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-13 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000000100-ReachabilityFireability-15 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C1000N0000000100"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="mcc4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C1000N0000000100.tgz
mv GPPP-PT-C1000N0000000100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-structural"
echo " Input is GPPP-PT-C1000N0000000100, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r095-blw7-152650007300350"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;