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Model Checking Contest 2018
8th edition, Bratislava, Slovakia, June 26, 2018
Execution of r095-blw7-152650007300336
Last Updated
June 26, 2018

About the Execution of M4M.struct for GPPP-PT-C0100N0000100000

Execution Summary
Max Memory
Used (MB)		 Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
15919.470 664404.00 1122181.00 7619.00 ???????????????? normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-structural
Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r095-blw7-152650007300336
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-00
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-01
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-02
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-03
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-04
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-05
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-06
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-07
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-08
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-09
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1527622567823


BK_STOP 1527623232227

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0100N0000100000 as instance name.
Using GPPP as model name.
Using algorithm or tool decision-tree.
Model characteristics are: {'Examination': 'ReachabilityFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 305959, 'Memory': 15952.4, 'Tool': 'lola'}, {'Time': 331578, 'Memory': 15949.29, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityFireability lola GPPP-PT-C0100N0000100000...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
ReachabilityFireability @ GPPP-PT-C0100N0000100000 @ 3540 seconds
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000100000-ReachabilityFireability.task
lola: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase))))) : E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose)))) : E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase))))))) : E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase)))) : E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase))))) : E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2)))) : A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase)))) : A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase))))) : A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase)))) : E (F (FIREABLE(remove))) : E (F (FIREABLE(remove))) : E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1))))) : E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Aldolase) AND NOT FIREABLE(generate) AND (FIREABLE(Glutathione_reductose) OR (FIREABLE(Glutathione_oxidation) AND FIREABLE(generate))) AND (FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Aldolase)))))) : E (F (FIREABLE(Lactate_dehydrogenase))) : E (F (((NOT FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Aldolase)) AND NOT FIREABLE(remove) AND FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(Phosphofructokinase)))) : A (G ((NOT FIREABLE(TIM_backward) OR NOT FIREABLE(Transketolase2))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 15 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 625 markings, 627 edges
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 20 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 18 markings, 17 edges
lola: ========================================
lola: state equation: calling and running sara
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 88 literals and 8 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-2.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 618 markings, 617 edges
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULTsara:
try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability.sara.lola:
result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 23 markings, 24 edges
lola: ========================================
lola: subprocess 4 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 64 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara
sara: place or transition ordering is non-deterministic
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara.
sara: place or transition ordering is non-deterministic

lola: sara is running 0 secs || 3101964 markings, 7719641 edges, 620393 markings/sec, 0 secs
lola: sara is running 5 secs || 6332564 markings, 15693527 edges, 646120 markings/sec, 5 secs
lola: sara is running 10 secs || 9459135 markings, 23383094 edges, 625314 markings/sec, 10 secs
lola: sara is running 15 secs || 12569805 markings, 31003293 edges, 622134 markings/sec, 15 secs
lola: sara is running 20 secs || 15585041 markings, 38390353 edges, 603047 markings/sec, 20 secs
lola: sara is running 25 secs || 18533024 markings, 45589122 edges, 589597 markings/sec, 25 secs
lola: sara is running 30 secs || 21648032 markings, 53193561 edges, 623002 markings/sec, 30 secs
lola: sara is running 35 secs || 24652866 markings, 60526528 edges, 600967 markings/sec, 35 secs
lola: sara is running 40 secs || 27618327 markings, 67752784 edges, 593092 markings/sec, 40 secs
lola: sara is running 45 secs || 30297307 markings, 74275745 edges, 535796 markings/sec, 45 secs
lola: sara is running 50 secs || 33281512 markings, 81546969 edges, 596841 markings/sec, 50 secs
lola: sara is running 55 secs || 36158865 markings, 88550002 edges, 575471 markings/sec, 55 secs
lola: sara is running 60 secs || 39048777 markings, 95570004 edges, 577982 markings/sec, 60 secs
lola: sara is running 65 secs || 41929507 markings, 102582836 edges, 576146 markings/sec, 65 secs
lola: sara is running 70 secs || 44724246 markings, 109361586 edges, 558948 markings/sec, 70 secs
lola: sara is running 75 secs || 47458963 markings, 116019021 edges, 546943 markings/sec, 75 secs
lola: sara is running 80 secs || 50309319 markings, 122957949 edges, 570071 markings/sec, 80 secs
lola: sara is running 85 secs || 53037476 markings, 129578369 edges, 545631 markings/sec, 85 secs
lola: sara is running 90 secs || 55883305 markings, 136481308 edges, 569166 markings/sec, 90 secs
lola: sara is running 95 secs || 58671352 markings, 143248515 edges, 557609 markings/sec, 95 secs
lola: sara is running 100 secs || 61503904 markings, 150124154 edges, 566510 markings/sec, 100 secs
lola: sara is running 105 secs || 64243048 markings, 156778776 edges, 547829 markings/sec, 105 secs
lola: sara is running 110 secs || 66971225 markings, 163382774 edges, 545635 markings/sec, 110 secs
lola: sara is running 115 secs || 69619011 markings, 169786245 edges, 529557 markings/sec, 115 secs
lola: sara is running 120 secs || 72417908 markings, 176590436 edges, 559779 markings/sec, 120 secs
lola: sara is running 125 secs || 75184503 markings, 183300766 edges, 553319 markings/sec, 125 secs
lola: sara is running 130 secs || 77911771 markings, 189894144 edges, 545454 markings/sec, 130 secs
lola: sara is running 135 secs || 80633511 markings, 196512334 edges, 544348 markings/sec, 135 secs
lola: sara is running 140 secs || 83276595 markings, 202887481 edges, 528617 markings/sec, 140 secs
lola: sara is running 145 secs || 86016892 markings, 209545577 edges, 548059 markings/sec, 145 secs
lola: sara is running 150 secs || 88718707 markings, 216078175 edges, 540363 markings/sec, 150 secs
lola: sara is running 155 secs || 91295262 markings, 222329591 edges, 515311 markings/sec, 155 secs
lola: sara is running 160 secs || 94028466 markings, 228941180 edges, 546641 markings/sec, 160 secs
lola: sara is running 165 secs || 96651326 markings, 235299288 edges, 524572 markings/sec, 165 secs
lola: sara is running 170 secs || 99206182 markings, 241492988 edges, 510971 markings/sec, 170 secs
lola: sara is running 175 secs || 102065350 markings, 248396045 edges, 571834 markings/sec, 175 secs
lola: sara is running 180 secs || 104942286 markings, 255372221 edges, 575387 markings/sec, 180 secs
lola: sara is running 185 secs || 107752324 markings, 262180194 edges, 562008 markings/sec, 185 secs
lola: sara is running 190 secs || 110548195 markings, 268923400 edges, 559174 markings/sec, 190 secs
lola: sara is running 195 secs || 113307112 markings, 275609273 edges, 551783 markings/sec, 195 secs
lola: sara is running 200 secs || 115933801 markings, 281966981 edges, 525338 markings/sec, 200 secs
lola: sara is running 205 secs || 118808637 markings, 288927786 edges, 574967 markings/sec, 205 secs
lola: sara is running 210 secs || 121533280 markings, 295504949 edges, 544929 markings/sec, 210 secs
lola: sara is running 215 secs || 124216044 markings, 301980905 edges, 536553 markings/sec, 215 secs
lola: sara is running 220 secs || 126932778 markings, 308565138 edges, 543347 markings/sec, 220 secs
lola: sara is running 225 secs || 129566121 markings, 314920105 edges, 526669 markings/sec, 225 secs
lola: sara is running 230 secs || 132317840 markings, 321604173 edges, 550344 markings/sec, 230 secs
lola: sara is running 235 secs || 134849275 markings, 327710435 edges, 506287 markings/sec, 235 secs
lola: sara is running 240 secs || 137682351 markings, 334581247 edges, 566615 markings/sec, 240 secs
lola: sara is running 245 secs || 140457731 markings, 341278090 edges, 555076 markings/sec, 245 secs
lola: sara is running 250 secs || 143215826 markings, 347941270 edges, 551619 markings/sec, 250 secs
lola: sara is running 255 secs || 145837810 markings, 354274823 edges, 524397 markings/sec, 255 secs
lola: sara is running 260 secs || 148573776 markings, 360885515 edges, 547193 markings/sec, 260 secs
lola: sara is running 265 secs || 151219817 markings, 367278216 edges, 529208 markings/sec, 265 secs
lola: sara is running 270 secs || 153897666 markings, 373751679 edges, 535570 markings/sec, 270 secs
lola: sara is running 275 secs || 156477378 markings, 379986765 edges, 515942 markings/sec, 275 secs
lola: sara is running 280 secs || 159205789 markings, 386582889 edges, 545682 markings/sec, 280 secs
lola: sara is running 285 secs || 161827011 markings, 392917229 edges, 524244 markings/sec, 285 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 5 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-5.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 22 markings, 21 edges
lola: ========================================
lola: subprocess 6 will run for 324 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 19 markings, 18 edges
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-6.sara
lola: ========================================
lola: subprocess 7 will run for 360 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 6 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================
lola: subprocess 8 will run for 405 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-8.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 612 markings, 611 edges
lola: ========================================
lola: subprocess 9 will run for 463 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 10 will run for 540 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 11 will run for 649 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 147 literals and 27 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4468860 markings, 8022959 edges, 893772 markings/sec, 0 secs
lola: sara is running 5 secs || 8711118 markings, 15804403 edges, 848452 markings/sec, 5 secs
lola: sara is running 10 secs || 13439680 markings, 24355164 edges, 945712 markings/sec, 10 secs
lola: sara is running 15 secs || 18159250 markings, 32854725 edges, 943914 markings/sec, 15 secs
lola: sara is running 20 secs || 22048316 markings, 40636426 edges, 777813 markings/sec, 20 secs
lola: sara is running 25 secs || 25765608 markings, 47897411 edges, 743458 markings/sec, 25 secs
lola: sara is running 30 secs || 29581846 markings, 55218852 edges, 763248 markings/sec, 30 secs
lola: sara is running 35 secs || 33449718 markings, 63192096 edges, 773574 markings/sec, 35 secs
lola: sara is running 40 secs || 38178303 markings, 71701239 edges, 945717 markings/sec, 40 secs
lola: sara is running 45 secs || 42903542 markings, 80168263 edges, 945048 markings/sec, 45 secs
lola: sara is running 50 secs || 47589250 markings, 88536891 edges, 937142 markings/sec, 50 secs
lola: sara is running 55 secs || 52205642 markings, 96754738 edges, 923278 markings/sec, 55 secs
lola: sara is running 60 secs || 56794419 markings, 104900621 edges, 917755 markings/sec, 60 secs
lola: sara is running 65 secs || 60617184 markings, 112747481 edges, 764553 markings/sec, 65 secs
lola: sara is running 70 secs || 63996267 markings, 120134378 edges, 675817 markings/sec, 70 secs
lola: sara is running 75 secs || 67711214 markings, 127579440 edges, 742989 markings/sec, 75 secs
lola: sara is running 80 secs || 71284399 markings, 134680333 edges, 714637 markings/sec, 80 secs
lola: sara is running 85 secs || 75064780 markings, 141968865 edges, 756076 markings/sec, 85 secs
lola: sara is running 90 secs || 78793364 markings, 149210258 edges, 745717 markings/sec, 90 secs
lola: sara is running 95 secs || 82507854 markings, 156409907 edges, 742898 markings/sec, 95 secs
lola: sara is running 100 secs || 85831943 markings, 163511409 edges, 664818 markings/sec, 100 secs
lola: sara is running 105 secs || 89100490 markings, 170869769 edges, 653709 markings/sec, 105 secs
lola: sara is running 110 secs || 92680359 markings, 178153203 edges, 715974 markings/sec, 110 secs
lola: sara is running 115 secs || 96529093 markings, 185513967 edges, 769747 markings/sec, 115 secs
lola: sara is running 120 secs || 100253769 markings, 192862598 edges, 744935 markings/sec, 120 secs
lola: sara is running 125 secs || 103888116 markings, 199866128 edges, 726869 markings/sec, 125 secs
lola: sara is running 130 secs || 107915154 markings, 205280694 edges, 805408 markings/sec, 130 secs
lola: sara is running 135 secs || 111420204 markings, 209152090 edges, 701010 markings/sec, 135 secs
lola: sara is running 140 secs || 115145545 markings, 213525270 edges, 745068 markings/sec, 140 secs
lola: sara is running 145 secs || 119487254 markings, 218197697 edges, 868342 markings/sec, 145 secs
lola: sara is running 150 secs || 123910622 markings, 222948071 edges, 884674 markings/sec, 150 secs
lola: sara is running 155 secs || 127141940 markings, 226665674 edges, 646264 markings/sec, 155 secs
lola: sara is running 160 secs || 130127683 markings, 230407602 edges, 597149 markings/sec, 160 secs
lola: sara is running 165 secs || 133097702 markings, 233808929 edges, 594004 markings/sec, 165 secs
lola: sara is running 170 secs || 136515272 markings, 238046220 edges, 683514 markings/sec, 170 secs
lola: sara is running 175 secs || 139910276 markings, 241839555 edges, 679001 markings/sec, 175 secs
lola: sara is running 180 secs || 143161969 markings, 245536278 edges, 650339 markings/sec, 180 secs
lola: sara is running 185 secs || 146190672 markings, 249340725 edges, 605741 markings/sec, 185 secs
lola: sara is running 190 secs || 149040142 markings, 252652828 edges, 569894 markings/sec, 190 secs
lola: sara is running 195 secs || 151839979 markings, 256229385 edges, 559967 markings/sec, 195 secs
lola: sara is running 200 secs || 154541539 markings, 259414625 edges, 540312 markings/sec, 200 secs
lola: sara is running 205 secs || 157618286 markings, 262835274 edges, 615349 markings/sec, 205 secs
lola: sara is running 210 secs || 160919682 markings, 266953475 edges, 660279 markings/sec, 210 secs
lola: sara is running 215 secs || 164330345 markings, 270764690 edges, 682133 markings/sec, 215 secs
lola: sara is running 220 secs || 167410460 markings, 274319105 edges, 616023 markings/sec, 220 secs
lola: sara is running 225 secs || 170342043 markings, 278178903 edges, 586317 markings/sec, 225 secs
lola: sara is running 230 secs || 173068148 markings, 281452777 edges, 545221 markings/sec, 230 secs
lola: sara is running 235 secs || 175734658 markings, 284913407 edges, 533302 markings/sec, 235 secs
lola: sara is running 240 secs || 176137487 markings, 285375669 edges, 80566 markings/sec, 240 secs
lola: sara is running 245 secs || 176164297 markings, 285406812 edges, 5362 markings/sec, 245 secs
lola: sara is running 250 secs || 176177274 markings, 285421839 edges, 2595 markings/sec, 250 secs
lola: sara is running 255 secs || 176177330 markings, 285421902 edges, 11 markings/sec, 255 secs
lola: sara is running 260 secs || 176177347 markings, 285421924 edges, 3 markings/sec, 260 secs
lola: sara is running 265 secs || 176177371 markings, 285421950 edges, 5 markings/sec, 265 secs
lola: sara is running 270 secs || 176177389 markings, 285421970 edges, 4 markings/sec, 270 secs
lola: sara is running 275 secs || 176177404 markings, 285421985 edges, 3 markings/sec, 275 secs
lola: sara is running 280 secs || 176177414 markings, 285422003 edges, 2 markings/sec, 280 secs
lola: sara is running 285 secs || 176177444 markings, 285422033 edges, 6 markings/sec, 285 secs
lola: sara is running 290 secs || 176177450 markings, 285422044 edges, 1 markings/sec, 290 secs
lola: sara is running 295 secs || 176177501 markings, 285422099 edges, 10 markings/sec, 295 secs
lola: sara is running 300 secs || 176181120 markings, 285426122 edges, 724 markings/sec, 300 secs
lola: sara is running 305 secs || 176181152 markings, 285426159 edges, 6 markings/sec, 305 secs
lola: sara is running 310 secs || 176184341 markings, 285429603 edges, 638 markings/sec, 310 secs
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '`'
Aborted (core dumped)
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000100000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="mcc4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000100000.tgz
mv GPPP-PT-C0100N0000100000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-structural"
echo " Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r095-blw7-152650007300336"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;