Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
............................................
/home/mcc/execution
total 196K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.9K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-structural
Input is GPPP-PT-C0001N0000000010, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r095-blw7-152650007200252
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-00
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-01
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-02
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-03
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-04
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-05
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-06
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-07
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-08
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-09
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000010-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1527612803174


BK_STOP 1527612846496

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0001N0000000010 as instance name.
Using GPPP as model name.
Using algorithm or tool decision-tree.
Model characteristics are: {'Examination': 'ReachabilityFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 235, 'Memory': 111.12, 'Tool': 'lola'}, {'Time': 277, 'Memory': 111.78, 'Tool': 'lola'}, {'Time': 2607, 'Memory': 114.99, 'Tool': 'gspn'}, {'Time': 4979, 'Memory': 315.74, 'Tool': 'itstools'}, {'Time': 5195, 'Memory': 153.62, 'Tool': 'gspn'}, {'Time': 5463, 'Memory': 325.54, 'Tool': 'itstools'}, {'Time': 7121, 'Memory': 7483.46, 'Tool': 'marcie'}, {'Time': 7466, 'Memory': 7482.7, 'Tool': 'marcie'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityFireability lola GPPP-PT-C0001N0000000010...

Time: 3600 - MCC
----- Start make prepare stderr -----
----- Start make prepare stdout -----
===========================================================================================
GPPP-PT-C0001N0000000010: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
GPPP-PT-C0001N0000000010: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
ReachabilityFireability @ GPPP-PT-C0001N0000000010 @ 3540 seconds
----- Start make result stderr -----
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 20 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0001N0000000010-ReachabilityFireability.task
lola: A (G ((NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Pyruvate_kinase) OR (NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Phosphoglycerate_kinase)) OR NOT FIREABLE(generate) OR NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transketolase2)))) : E (F ((FIREABLE(Enolase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(remove) AND (((FIREABLE(Glutathione_reductose) OR FIREABLE(Phosphofructokinase)) AND FIREABLE(Ru5P_epimerase)) OR (NOT FIREABLE(Transketolase2) AND NOT FIREABLE(Ru5P_isomerase)))))) : A (G ((NOT FIREABLE(GAP_dehydrogenase) OR NOT FIREABLE(Transaldolase) OR NOT FIREABLE(Enolase) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(Aldolase)))) : E (F ((FIREABLE(Transaldolase) AND FIREABLE(Hexokinase) AND FIREABLE(GAP_dehydrogenase) AND FIREABLE(Phosphoglycerate_mutase)))) : E (F ((NOT FIREABLE(Transketolase2) AND NOT FIREABLE(Transaldolase) AND FIREABLE(Glutathione_oxidation) AND FIREABLE(Lactate_dehydrogenase) AND (FIREABLE(Ru5P_epimerase) OR (FIREABLE(Transketolase1) AND FIREABLE(Aldolase)))))) : A (G ((NOT FIREABLE(remove) OR NOT FIREABLE(Enolase) OR FIREABLE(Hexokinase) OR ((FIREABLE(Transketolase1) OR FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Phosphofructokinase) OR FIREABLE(GAP_dehydrogenase)) AND (FIREABLE(Lactate_dehydrogenase) OR FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(GAP_dehydrogenase)))))) : E (F (())) : E (F ((FIREABLE(Phosphofructokinase) AND FIREABLE(Phosphoclucose_isomerase) AND (FIREABLE(GAP_dehydrogenase) OR FIREABLE(Aldolase))))) : E (F ((NOT FIREABLE(TIM_forward) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Hexokinase)) AND FIREABLE(Transketolase2) AND (FIREABLE(Aldolase) OR ((FIREABLE(TIM_backward) OR FIREABLE(remove)) AND (FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Transketolase2))))))) : E (F (FIREABLE(remove))) : A (G (NOT FIREABLE(remove))) : E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(Enolase) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Aldolase) AND (((FIREABLE(Glutathione_oxidation) OR FIREABLE(Transketolase2)) AND NOT FIREABLE(Hexokinase)) OR FIREABLE(Transketolase1))))) : E (F ((NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Lactate_dehydrogenase) AND FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase)))) : A (G ((NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Lactate_dehydrogenase) OR FIREABLE(Phosphoclucose_isomerase) OR NOT FIREABLE(remove)))) : A (G ((NOT FIREABLE(GAP_dehydrogenase) OR NOT FIREABLE(Transketolase2) OR NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Glutathione_reductose)))) : A (G (()))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Pyruvate_kinase) OR (NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Phosphoglycerate_kinase)) OR NOT FIREABLE(generate) OR NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transketolase2))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 23 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is invariant.
lola: 7027 markings, 12010 edges
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Enolase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(remove) AND (((FIREABLE(Glutathione_reductose) OR FIREABLE(Phosphofructokinase)) AND FIREABLE(Ru5P_epimerase)) OR (NOT FIREABLE(Transketolase2) AND NOT FIREABLE(Ru5P_isomerase))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 52 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability.sara.
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is unreachable.
lola: 12846 markings, 23814 edges
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(GAP_dehydrogenase) OR NOT FIREABLE(Transaldolase) OR NOT FIREABLE(Enolase) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(Aldolase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 13 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-2.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-2.sara.

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transaldolase) AND FIREABLE(Hexokinase) AND FIREABLE(GAP_dehydrogenase) AND FIREABLE(Phosphoglycerate_mutase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 10 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-3.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-3.sara.

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 4 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Transketolase2) AND NOT FIREABLE(Transaldolase) AND FIREABLE(Glutathione_oxidation) AND FIREABLE(Lactate_dehydrogenase) AND (FIREABLE(Ru5P_epimerase) OR (FIREABLE(Transketolase1) AND FIREABLE(Aldolase))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 66 literals and 9 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-4.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 403 markings, 415 edges
lola: ========================================
lola: subprocess 5 will run for 321 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(remove) OR NOT FIREABLE(Enolase) OR FIREABLE(Hexokinase) OR ((FIREABLE(Transketolase1) OR FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Phosphofructokinase) OR FIREABLE(GAP_dehydrogenase)) AND (FIREABLE(Lactate_dehydrogenase) OR FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(GAP_dehydrogenase))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 632 literals and 76 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-5.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-5.sara.
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is invariant.
lola: 10599 markings, 20771 edges
lola: ========================================
lola: subprocess 6 will run for 354 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: FALSE
lola: processed formula length: 5
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000010-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: preprocessing
lola: The net violates the given property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================
lola: subprocess 7 will run for 393 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphofructokinase) AND FIREABLE(Phosphoclucose_isomerase) AND (FIREABLE(GAP_dehydrogenase) OR FIREABLE(Aldolase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 13 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-7.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-7.sara.
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is unreachable.
lola: 12519 markings, 31714 edges
lola: subprocess 8 will run for 442 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(TIM_forward) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Hexokinase)) AND FIREABLE(Transketolase2) AND (FIREABLE(Aldolase) OR ((FIREABLE(TIM_backward) OR FIREABLE(remove)) AND (FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Transketolase2)))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: ========================================
lola: state equation: Generated DNF with 80 literals and 10 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-8.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-8.sara.
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is unreachable.
lola: 9252 markings, 19621 edges
lola: ========================================
lola: subprocess 9 will run for 505 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-9.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 67 markings, 66 edges
lola: ========================================
lola: subprocess 10 will run for 590 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (NOT FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-10.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 67 markings, 66 edges
lola: state equation: calling and running saralola:
========================================
lola: subprocess 11 will run for 708 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(Enolase) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Aldolase) AND (((FIREABLE(Glutathione_oxidation) OR FIREABLE(Transketolase2)) AND NOT FIREABLE(Hexokinase)) OR FIREABLE(Transketolase1)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 57 literals and 5 conjunctive subformulas
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-10.sara.
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-11.sara
lola: state equation: calling and running sara

sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-11.sara.
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is unreachable.
lola: 23645 markings, 43401 edges
lola: ========================================
lola: subprocess 12 will run for 885 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Lactate_dehydrogenase) AND FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 14 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-12.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-12.sara.
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is unreachable.
lola: 11945 markings, 24126 edges
lola: ========================================
lola: subprocess 13 will run for 1180 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Lactate_dehydrogenase) OR FIREABLE(Phosphoclucose_isomerase) OR NOT FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-13.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0001N0000000010-ReachabilityFireability-13.sara.

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================
lola: subprocess 14 will run for 1770 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(GAP_dehydrogenase) OR NOT FIREABLE(Transketolase2) OR NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Glutathione_reductose))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 10 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 22 markings, 21 edges
lola: state equation: write sara problem file to GPPP-PT-C0001N0000000010-ReachabilityFireability-14.sara
lola: ========================================
lola: subprocess 15 will run for 3540 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000010-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================
lola: RESULT
lola:
SUMMARY: yes no yes no yes yes no no no yes no no no yes no yes
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-1 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-2 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-3 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-4 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-6 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-7 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-8 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-11 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-13 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-14 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000010-ReachabilityFireability-15 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stderr -----
----- Kill lola and sara stdout -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000010"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="mcc4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000010.tgz
mv GPPP-PT-C0001N0000000010 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-structural"
echo " Input is GPPP-PT-C0001N0000000010, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r095-blw7-152650007200252"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;