About the Execution of M4M.full for GPPP-PT-C0100N0000100000
Execution Summary | |||||
Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
15919.380 | 591690.00 | 1102550.00 | 10786.80 | ???????????????? | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Waiting for the VM to be ready (probing ssh)
.................
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 26 09:26 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 26 09:26 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 26 09:26 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 26 09:26 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r094-blw7-152650006400336
=====================================================================
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-00
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-01
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-02
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-03
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-04
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-05
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-06
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-07
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-08
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-09
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0100N0000100000-ReachabilityFireability-15
=== Now, execution of the tool begins
BK_START 1527537084943
BK_STOP 1527537676633
--------------------
content from stderr:
Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0100N0000100000 as instance name.
Using GPPP as model name.
Using algorithm or tool decision-tree.
Model characteristics are: {'Examination': 'ReachabilityFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 305959, 'Memory': 15952.4, 'Tool': 'lola'}, {'Time': 331578, 'Memory': 15949.29, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityFireability lola GPPP-PT-C0100N0000100000...
Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete
checking for too many tokens
===========================================================================================
GPPP-PT-C0100N0000100000: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
ReachabilityFireability @ GPPP-PT-C0100N0000100000 @ 3540 seconds
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
----- Kill lola and sara stderr -----
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000100000-ReachabilityFireability.task
lola: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase))))) : E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose)))) : E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase))))))) : E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase)))) : E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase))))) : E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2)))) : A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase)))) : A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase))))) : A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase)))) : E (F (FIREABLE(remove))) : E (F (FIREABLE(remove))) : E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1))))) : E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Aldolase) AND NOT FIREABLE(generate) AND (FIREABLE(Glutathione_reductose) OR (FIREABLE(Glutathione_oxidation) AND FIREABLE(generate))) AND (FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Aldolase)))))) : E (F (FIREABLE(Lactate_dehydrogenase))) : E (F (((NOT FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Aldolase)) AND NOT FIREABLE(remove) AND FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(Phosphofructokinase)))) : A (G ((NOT FIREABLE(TIM_backward) OR NOT FIREABLE(Transketolase2))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(TIM_forward) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Enolase) OR FIREABLE(GAP_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 15 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 625 markings, 627 edges
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Ru5P_epimerase)) AND FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 20 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 18 markings, 17 edges
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(TIM_forward)) AND FIREABLE(G6P_dehydrogenase) AND FIREABLE(Pyruvate_kinase) AND (FIREABLE(Ru5P_isomerase) OR FIREABLE(Lactate_dehydrogenase)) AND ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Glutathione_oxidation)) OR NOT FIREABLE(Enolase) OR (FIREABLE(TIM_backward) AND FIREABLE(Enolase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_kinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 88 literals and 8 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-2.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 618 markings, 617 edges
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(GAP_dehydrogenase) AND NOT FIREABLE(Transaldolase) AND (NOT FIREABLE(Enolase) OR NOT FIREABLE(Transaldolase)) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 23 markings, 24 edges
lola: state equation: Generated DNF with 240 literals and 48 conjunctive subformulas
lola: ========================================
lola: subprocess 4 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transaldolase) AND FIREABLE(Ru5P_isomerase) AND FIREABLE(generate) AND NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Enolase) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Aldolase) OR FIREABLE(Ru5P_epimerase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 64 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-4.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 3400957 markings, 8462652 edges, 680191 markings/sec, 0 secs
lola: sara is running 5 secs || 6714572 markings, 16634525 edges, 662723 markings/sec, 5 secs
lola: sara is running 10 secs || 9921308 markings, 24512879 edges, 641347 markings/sec, 10 secs
lola: sara is running 15 secs || 13070330 markings, 32221107 edges, 629804 markings/sec, 15 secs
lola: sara is running 20 secs || 16164060 markings, 39802463 edges, 618746 markings/sec, 20 secs
lola: sara is running 25 secs || 19203767 markings, 47226895 edges, 607941 markings/sec, 25 secs
lola: sara is running 30 secs || 22366899 markings, 54951435 edges, 632626 markings/sec, 30 secs
lola: sara is running 35 secs || 25442241 markings, 62455093 edges, 615068 markings/sec, 35 secs
lola: sara is running 40 secs || 28429398 markings, 69718235 edges, 597431 markings/sec, 40 secs
lola: sara is running 45 secs || 31414364 markings, 77001697 edges, 596993 markings/sec, 45 secs
lola: sara is running 50 secs || 34416481 markings, 84319318 edges, 600423 markings/sec, 50 secs
lola: sara is running 55 secs || 37366068 markings, 91486745 edges, 589917 markings/sec, 55 secs
lola: sara is running 60 secs || 40262101 markings, 98515052 edges, 579207 markings/sec, 60 secs
lola: sara is running 65 secs || 43167720 markings, 105597974 edges, 581124 markings/sec, 65 secs
lola: sara is running 70 secs || 46029189 markings, 112541218 edges, 572294 markings/sec, 70 secs
lola: sara is running 75 secs || 48869932 markings, 119451418 edges, 568149 markings/sec, 75 secs
lola: sara is running 80 secs || 51858194 markings, 126707912 edges, 597652 markings/sec, 80 secs
lola: sara is running 85 secs || 54741080 markings, 133697448 edges, 576577 markings/sec, 85 secs
lola: sara is running 90 secs || 57597577 markings, 140626627 edges, 571299 markings/sec, 90 secs
lola: sara is running 95 secs || 60461438 markings, 147575857 edges, 572772 markings/sec, 95 secs
lola: sara is running 100 secs || 63310149 markings, 154491301 edges, 569742 markings/sec, 100 secs
lola: sara is running 105 secs || 66142197 markings, 161369744 edges, 566410 markings/sec, 105 secs
lola: sara is running 110 secs || 68899366 markings, 168064083 edges, 551434 markings/sec, 110 secs
lola: sara is running 115 secs || 71639177 markings, 174702512 edges, 547962 markings/sec, 115 secs
lola: sara is running 120 secs || 74528958 markings, 181694819 edges, 577956 markings/sec, 120 secs
lola: sara is running 125 secs || 77307862 markings, 188448160 edges, 555781 markings/sec, 125 secs
lola: sara is running 130 secs || 80045355 markings, 195066049 edges, 547499 markings/sec, 130 secs
lola: sara is running 135 secs || 82861604 markings, 201893203 edges, 563250 markings/sec, 135 secs
lola: sara is running 140 secs || 85592134 markings, 208523485 edges, 546106 markings/sec, 140 secs
lola: sara is running 145 secs || 88376468 markings, 215252115 edges, 556867 markings/sec, 145 secs
lola: sara is running 150 secs || 91032719 markings, 221698853 edges, 531250 markings/sec, 150 secs
lola: sara is running 155 secs || 93857197 markings, 228533501 edges, 564896 markings/sec, 155 secs
lola: sara is running 160 secs || 96529466 markings, 234997414 edges, 534454 markings/sec, 160 secs
lola: sara is running 165 secs || 99121595 markings, 241279945 edges, 518426 markings/sec, 165 secs
lola: sara is running 170 secs || 102071891 markings, 248411777 edges, 590059 markings/sec, 170 secs
lola: sara is running 175 secs || 105007327 markings, 255531502 edges, 587087 markings/sec, 175 secs
lola: sara is running 180 secs || 107897037 markings, 262525667 edges, 577942 markings/sec, 180 secs
lola: sara is running 185 secs || 110739756 markings, 269379921 edges, 568544 markings/sec, 185 secs
lola: sara is running 190 secs || 113565568 markings, 276241237 edges, 565162 markings/sec, 190 secs
lola: sara is running 195 secs || 116319583 markings, 282915162 edges, 550803 markings/sec, 195 secs
lola: sara is running 200 secs || 119172167 markings, 289797166 edges, 570517 markings/sec, 200 secs
lola: sara is running 205 secs || 121985298 markings, 296589551 edges, 562626 markings/sec, 205 secs
lola: sara is running 210 secs || 124671592 markings, 303085700 edges, 537259 markings/sec, 210 secs
lola: sara is running 215 secs || 127500614 markings, 309955338 edges, 565804 markings/sec, 215 secs
lola: sara is running 220 secs || 130259431 markings, 316631405 edges, 551763 markings/sec, 220 secs
lola: sara is running 225 secs || 133058545 markings, 323390385 edges, 559823 markings/sec, 225 secs
lola: sara is running 230 secs || 135725122 markings, 329827962 edges, 533315 markings/sec, 230 secs
lola: sara is running 235 secs || 138573417 markings, 336703119 edges, 569659 markings/sec, 235 secs
lola: sara is running 240 secs || 141423072 markings, 343590284 edges, 569931 markings/sec, 240 secs
lola: sara is running 245 secs || 144104189 markings, 350064341 edges, 536223 markings/sec, 245 secs
lola: sara is running 250 secs || 146901517 markings, 356845354 edges, 559466 markings/sec, 250 secs
lola: sara is running 255 secs || 149606960 markings, 363368929 edges, 541089 markings/sec, 255 secs
lola: sara is running 260 secs || 152413923 markings, 370175086 edges, 561393 markings/sec, 260 secs
lola: sara is running 265 secs || 155025374 markings, 376461783 edges, 522290 markings/sec, 265 secs
lola: sara is running 270 secs || 157826607 markings, 383254848 edges, 560247 markings/sec, 270 secs
lola: sara is running 275 secs || 160509854 markings, 389713732 edges, 536649 markings/sec, 275 secs
lola: sara is running 280 secs || 163316798 markings, 396518848 edges, 561389 markings/sec, 280 secs
lola: sara is running 285 secs || 165910072 markings, 402760712 edges, 518655 markings/sec, 285 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 5 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-5.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 22 markings, 21 edges
lola: ========================================
lola: subprocess 6 will run for 324 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((FIREABLE(Aldolase) OR FIREABLE(Transketolase2) OR NOT FIREABLE(Lactate_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 19 markings, 18 edges
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-6.sara
lola: ========================================
lola: subprocess 7 will run for 360 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Hexokinase) OR FIREABLE(Glutathione_oxidation) OR (NOT FIREABLE(Glutathione_oxidation) AND FIREABLE(Hexokinase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 6 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-7.sara.
sara: place or transition ordering is non-deterministic
lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================
lola: subprocess 8 will run for 405 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Ru5P_isomerase) OR NOT FIREABLE(Transaldolase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-8.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 612 markings, 611 edges
lola: ========================================
lola: subprocess 9 will run for 463 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-9.sara.
sara: place or transition ordering is non-deterministic
lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 10 will run for 540 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-10.sara.
sara: place or transition ordering is non-deterministic
lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 11 will run for 648 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(G6P_dehydrogenase)) AND FIREABLE(Lactate_dehydrogenase) AND ((FIREABLE(Transketolase2)) OR FIREABLE(generate)) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Transketolase1)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 147 literals and 27 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara
----- Finished stderr -----
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000100000-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4676829 markings, 8387711 edges, 935366 markings/sec, 0 secs
lola: sara is running 5 secs || 9219405 markings, 16725442 edges, 908515 markings/sec, 5 secs
lola: sara is running 10 secs || 14227914 markings, 25776673 edges, 1001702 markings/sec, 10 secs
lola: sara is running 15 secs || 19215019 markings, 34749684 edges, 997421 markings/sec, 15 secs
lola: sara is running 20 secs || 22907279 markings, 42392705 edges, 738452 markings/sec, 20 secs
lola: sara is running 25 secs || 26746030 markings, 49807929 edges, 767750 markings/sec, 25 secs
lola: sara is running 30 secs || 30566505 markings, 57270094 edges, 764095 markings/sec, 30 secs
lola: sara is running 35 secs || 34848021 markings, 65711367 edges, 856303 markings/sec, 35 secs
lola: sara is running 40 secs || 39828860 markings, 74663217 edges, 996168 markings/sec, 40 secs
lola: sara is running 45 secs || 44758004 markings, 83483664 edges, 985829 markings/sec, 45 secs
lola: sara is running 50 secs || 49645596 markings, 92200220 edges, 977518 markings/sec, 50 secs
lola: sara is running 55 secs || 54474968 markings, 100785661 edges, 965874 markings/sec, 55 secs
lola: sara is running 60 secs || 58784396 markings, 109131911 edges, 861886 markings/sec, 60 secs
lola: sara is running 65 secs || 62287232 markings, 116702737 edges, 700567 markings/sec, 65 secs
lola: sara is running 70 secs || 65941531 markings, 124120587 edges, 730860 markings/sec, 70 secs
lola: sara is running 75 secs || 69844205 markings, 131591976 edges, 780535 markings/sec, 75 secs
lola: sara is running 80 secs || 73434100 markings, 138997620 edges, 717979 markings/sec, 80 secs
lola: sara is running 85 secs || 77014185 markings, 145982617 edges, 716017 markings/sec, 85 secs
lola: sara is running 90 secs || 80958083 markings, 153602457 edges, 788780 markings/sec, 90 secs
lola: sara is running 95 secs || 84688212 markings, 160671676 edges, 746026 markings/sec, 95 secs
lola: sara is running 100 secs || 88093043 markings, 168233474 edges, 680966 markings/sec, 100 secs
lola: sara is running 105 secs || 91504071 markings, 175570516 edges, 682206 markings/sec, 105 secs
lola: sara is running 110 secs || 95130764 markings, 182961893 edges, 725339 markings/sec, 110 secs
lola: sara is running 115 secs || 98783149 markings, 190125539 edges, 730477 markings/sec, 115 secs
lola: sara is running 120 secs || 102610143 markings, 197474650 edges, 765399 markings/sec, 120 secs
lola: sara is running 125 secs || 106551726 markings, 203829818 edges, 788317 markings/sec, 125 secs
lola: sara is running 130 secs || 110725758 markings, 208352347 edges, 834806 markings/sec, 130 secs
lola: sara is running 135 secs || 114475521 markings, 212551688 edges, 749953 markings/sec, 135 secs
lola: sara is running 140 secs || 119083389 markings, 217765150 edges, 921574 markings/sec, 140 secs
lola: sara is running 145 secs || 123850591 markings, 222883744 edges, 953440 markings/sec, 145 secs
lola: sara is running 150 secs || 127382915 markings, 227007976 edges, 706465 markings/sec, 150 secs
lola: sara is running 155 secs || 130719573 markings, 231109070 edges, 667332 markings/sec, 155 secs
lola: sara is running 160 secs || 134116640 markings, 234926048 edges, 679413 markings/sec, 160 secs
lola: sara is running 165 secs || 137699014 markings, 239361908 edges, 716475 markings/sec, 165 secs
lola: sara is running 170 secs || 141436909 markings, 243563587 edges, 747579 markings/sec, 170 secs
lola: sara is running 175 secs || 144720434 markings, 247415075 edges, 656705 markings/sec, 175 secs
lola: sara is running 180 secs || 147956296 markings, 251371498 edges, 647172 markings/sec, 180 secs
lola: sara is running 185 secs || 151023685 markings, 255051626 edges, 613478 markings/sec, 185 secs
lola: sara is running 190 secs || 154153323 markings, 258945492 edges, 625928 markings/sec, 190 secs
lola: sara is running 195 secs || 157538111 markings, 262746815 edges, 676958 markings/sec, 195 secs
lola: sara is running 200 secs || 161044908 markings, 267092426 edges, 701359 markings/sec, 200 secs
lola: sara is running 205 secs || 164749222 markings, 271237824 edges, 740863 markings/sec, 205 secs
lola: sara is running 210 secs || 167941462 markings, 274947119 edges, 638448 markings/sec, 210 secs
lola: sara is running 215 secs || 171064340 markings, 279038407 edges, 624576 markings/sec, 215 secs
lola: sara is running 220 secs || 174013790 markings, 282554851 edges, 589890 markings/sec, 220 secs
lola: sara is running 225 secs || 176134313 markings, 285372224 edges, 424105 markings/sec, 225 secs
lola: sara is running 230 secs || 176153043 markings, 285393579 edges, 3746 markings/sec, 230 secs
lola: sara is running 235 secs || 176165304 markings, 285407921 edges, 2452 markings/sec, 235 secs
lola: sara is running 240 secs || 176165333 markings, 285407950 edges, 6 markings/sec, 240 secs
lola: sara is running 245 secs || 176165358 markings, 285407979 edges, 5 markings/sec, 245 secs
lola: sara is running 250 secs || 176165402 markings, 285408029 edges, 9 markings/sec, 250 secs
lola: sara is running 255 secs || 176170076 markings, 285413072 edges, 935 markings/sec, 255 secs
lola: sara is running 260 secs || 176173496 markings, 285416708 edges, 684 markings/sec, 260 secs
lola: sara is running 265 secs || 176188939 markings, 285434502 edges, 3089 markings/sec, 265 secs
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '`'
Aborted (core dumped)
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000100000-ReachabilityFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000100000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000100000.tgz
mv GPPP-PT-C0100N0000100000 execution
cd execution
pwd
ls -lh
# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is GPPP-PT-C0100N0000100000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r094-blw7-152650006400336"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;