Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.3K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is GPPP-PT-C0100N0000000010, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r093-blw7-152650005600305
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-00
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-01
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-02
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-03
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-04
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-05
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-06
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-07
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-08
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-09
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000000010-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527413170104

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph2127887009514681705.txt, -o, /tmp/graph2127887009514681705.bin, -w, /tmp/graph2127887009514681705.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph2127887009514681705.bin, -l, -1, -v, -w, /tmp/graph2127887009514681705.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 9 ordering constraints for composite.
built 7 ordering constraints for composite.
built 2 ordering constraints for composite.
built 5 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.41846e+10,4.24558,132700,25545,10871,210297,21195,129,537212,74,627325,0


Converting to forward existential form...Done !
original formula: EF((((u5.PEP>=1)&&(i0.u0.ADP>=1))&&(((i0.u1.Pyr>=1)&&(i0.u1.NADH>=1))&&((((i0.u0.ATP>=1)&&(i0.u6.Gluc>=1))&&(i3.u4.GAP>=1))&&(((i0.u0.ATP>=1)&&(i0.u6.Gluc>=1))||((i0.u1.Pyr>=1)&&(i0.u1.NADH>=1)))))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (((u5.PEP>=1)&&(i0.u0.ADP>=1))&&(((i0.u1.Pyr>=1)&&(i0.u1.NADH>=1))&&((((i0.u0.ATP>=1)&&(i0.u6.Gluc>=1))&&(i3.u4.GAP>=1))&&(((i0.u0.ATP>=1)&&(i0.u6.Gluc>=1))||((i0.u1.Pyr>=1)&&(i0.u1.NADH>=1)))))))] != FALSE
(forward)formula 0,1,4.52184,132700,1,0,210297,21195,183,537212,232,627325,43659
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: !((!(AF((((i0.u1.Pyr>=1)&&(i0.u1.NADH>=1))||((u7.F6P>=1)&&(i0.u0.ATP>=1))))) * A((((u8.Xu5P>=1)&&(u8.R5P>=1))&&((u5.PEP>=1)&&(i0.u0.ADP>=1))) U !((i3.u4.DHAP>=1)))))
=> equivalent forward existential formula: ([(Init * !(EG(!((((i0.u1.Pyr>=1)&&(i0.u1.NADH>=1))||((u7.F6P>=1)&&(i0.u0.ATP>=1)))))))] != FALSE + ([(FwdU(Init,!(!((i3.u4.DHAP>=1)))) * (!((((u8.Xu5P>=1)&&(u8.R5P>=1))&&((u5.PEP>=1)&&(i0.u0.ADP>=1)))) * !(!((i3.u4.DHAP>=1)))))] != FALSE + [FwdG(Init,!(!((i3.u4.DHAP>=1))))] != FALSE))
Reverse transition relation is NOT exact ! Due to transitions Transketolase2, i1.u3.Glutathione_oxidation, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :1/19/2/22
Using saturation style SCC detection
Using saturation style SCC detection
Fast SCC detection found a local SCC at level 3
Fast SCC detection found an SCC at level 4
Fast SCC detection found an SCC at level 5
(forward)formula 1,0,342.7,2207420,1,0,2.29996e+06,253031,316,9.7463e+06,745,1.41854e+07,1232027
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !

***************************************

original formula: ((EX(EF((i0.u6.start>=1))) + ((i3.u4.DHAP>=1) * A(((u7.G6P>=1)&&(u7.b1>=300)) U (i3.u4.GAP>=1)))) + A(((i1.u3.GSSG>=1)&&(i1.u2.NADPH>=1)) U ((u5.PEP>=1)&&(i0.u0.ADP>=1))))
=> equivalent forward existential formula: (([(FwdU(EY(Init),TRUE) * (i0.u6.start>=1))] != FALSE + [(((Init * (i3.u4.DHAP>=1)) * !(EG(!((i3.u4.GAP>=1))))) * !(E(!((i3.u4.GAP>=1)) U (!(((u7.G6P>=1)&&(u7.b1>=300))) * !((i3.u4.GAP>=1))))))] != FALSE) + [((Init * !(EG(!(((u5.PEP>=1)&&(i0.u0.ADP>=1)))))) * !(E(!(((u5.PEP>=1)&&(i0.u0.ADP>=1))) U (!(((i1.u3.GSSG>=1)&&(i1.u2.NADPH>=1))) * !(((u5.PEP>=1)&&(i0.u0.ADP>=1)))))))] != FALSE)
(forward)formula 2,0,2089.4,4023236,1,0,7.75608e+06,253031,240,1.75394e+07,740,2.52455e+07,981667
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !

***************************************

original formula: AG(!((((i3.u4.E4P>=1)&&(u8.Xu5P>=1))&&(i0.u6.start>=1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (((i3.u4.E4P>=1)&&(u8.Xu5P>=1))&&(i0.u6.start>=1)))] = FALSE
(forward)formula 3,1,2089.48,4023236,1,0,7.75608e+06,253031,252,1.75394e+07,741,2.52455e+07,983183
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: AG((EF(!((i3.u4.GAP>=1))) + AG((((u7.F6P>=1)&&(i0.u0.ATP>=1))||((u8.Ru5P>=1)&&(u8.a1>=200))))))
=> equivalent forward existential formula: [(FwdU((FwdU(Init,TRUE) * !(E(TRUE U !((i3.u4.GAP>=1))))),TRUE) * !((((u7.F6P>=1)&&(i0.u0.ATP>=1))||((u8.Ru5P>=1)&&(u8.a1>=200)))))] = FALSE
(forward)formula 4,1,2091.2,4023236,1,0,7.75608e+06,253031,388,1.75394e+07,777,2.52455e+07,1189530
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EF(!(EF(((i3.u4.E4P>=1)&&(u8.Xu5P>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U ((i3.u4.E4P>=1)&&(u8.Xu5P>=1)))))] != FALSE
(forward)formula 5,1,2091.33,4023236,1,0,7.75608e+06,253031,388,1.75394e+07,777,2.52455e+07,1198405
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: AF((((u8.Ru5P>=1)&&(u8.a2>=1)) + (((((i0.u0.ADP>=1)&&(i0.u0._1_3_BPG>=1))&&(i3.u4.GAP>=1))||(((i1.u2.NADPplus>=2)&&(u7.G6P>=1))&&(u7.b2>=1))) + AF((i3.u4.GAP>=1)))))
=> equivalent forward existential formula: [FwdG(Init,!((((u8.Ru5P>=1)&&(u8.a2>=1)) + (((((i0.u0.ADP>=1)&&(i0.u0._1_3_BPG>=1))&&(i3.u4.GAP>=1))||(((i1.u2.NADPplus>=2)&&(u7.G6P>=1))&&(u7.b2>=1))) + !(EG(!((i3.u4.GAP>=1))))))))] = FALSE
(forward)formula 6,1,3517.82,4908772,1,0,9.20397e+06,253031,256,2.42921e+07,650,3.30337e+07,6253949
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EF(AX((i0.u6.start>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(!((i0.u6.start>=1)))))] != FALSE
(forward)formula 7,1,3519.81,4908772,1,0,9.31299e+06,253031,262,2.42921e+07,756,3.30337e+07,6371965
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: AG(EF(!((i1.u3.GSH>=2))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !((i1.u3.GSH>=2)))))] = FALSE
(forward)formula 8,1,3535.08,4914316,1,0,1.03798e+07,253031,360,2.42921e+07,773,3.30337e+07,7534766
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EF(!(AX(((u5._2PG>=1)||((i0.u0.ATP>=1)&&(i0.u6.Gluc>=1))))))
=> equivalent forward existential formula: [(EY(FwdU(Init,TRUE)) * !(((u5._2PG>=1)||((i0.u0.ATP>=1)&&(i0.u6.Gluc>=1)))))] != FALSE
(forward)formula 9,1,3537.62,4914316,1,0,1.05257e+07,253031,399,2.42921e+07,788,3.30337e+07,7771745
FORMULA GPPP-PT-C0100N0000000010-CTLFireability-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 9:26:11 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 9:26:11 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 9:26:11 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 28 ms
May 27, 2018 9:26:11 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 33 places.
May 27, 2018 9:26:11 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 transitions.
May 27, 2018 9:26:11 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 5 ms
May 27, 2018 9:26:11 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 9:26:11 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 33 ms
May 27, 2018 9:26:11 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 12 ms
Begin: Sun May 27 09:26:12 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 09:26:12 2018
network size: 33 nodes, 148 links, 44 weight
quality increased from -0.0392419 to 0.50617
end computation: Sun May 27 09:26:12 2018
level 1:
start computation: Sun May 27 09:26:12 2018
network size: 10 nodes, 52 links, 44 weight
quality increased from 0.50617 to 0.567177
end computation: Sun May 27 09:26:12 2018
level 2:
start computation: Sun May 27 09:26:12 2018
network size: 6 nodes, 22 links, 44 weight
quality increased from 0.567177 to 0.567177
end computation: Sun May 27 09:26:12 2018
End: Sun May 27 09:26:12 2018
Total duration: 0 sec
0.567177
May 27, 2018 9:26:12 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 9:26:12 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 6 ms
May 27, 2018 9:26:12 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 9:26:12 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 2 redundant transitions.
May 27, 2018 9:26:12 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
May 27, 2018 9:26:12 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000000010"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000000010.tgz
mv GPPP-PT-C0100N0000000010 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is GPPP-PT-C0100N0000000010, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r093-blw7-152650005600305"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;