Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............
/home/mcc/execution
total 188K
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.4K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is GPPP-PT-C0001N0000000100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r092-blw7-152650004500256
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-00
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-01
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-02
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-03
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-04
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-05
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-06
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-07
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-08
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-09
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527285522906

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.45477e+08,15.9071,334076,2,22057,5,1.20338e+06,6,0,161,1.4256e+06,0


Converting to forward existential form...Done !
original formula: E(!((((ATP>=7)&&(Lac>=7))&&((_2PG>=1)||((ATP>=1)&&(Gluc>=1))))) U ((((start>=1)&&(FBP>=1))&&(((NADPplus>=2)&&(G6P>=1))&&(b2>=1)))&&((((G6P>=1)&&(b1>=3))||(DHAP>=1))&&((((NADPplus>=2)&&(G6P>=1))&&(b2>=1))&&((GSSG>=1)&&(NADPH>=1))))))
=> equivalent forward existential formula: [(FwdU(Init,!((((ATP>=7)&&(Lac>=7))&&((_2PG>=1)||((ATP>=1)&&(Gluc>=1)))))) * ((((start>=1)&&(FBP>=1))&&(((NADPplus>=2)&&(G6P>=1))&&(b2>=1)))&&((((G6P>=1)&&(b1>=3))||(DHAP>=1))&&((((NADPplus>=2)&&(G6P>=1))&&(b2>=1))&&((GSSG>=1)&&(NADPH>=1))))))] != FALSE
(forward)formula 0,0,15.9481,334076,1,0,5,1.20338e+06,8,0,680,1.4256e+06,0
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EX(EF(((((Ru5P>=1)&&(a2>=1))&&((GSSG>=1)&&(NADPH>=1)))&&((E4P>=1)&&(Xu5P>=1)))))
=> equivalent forward existential formula: [(FwdU(EY(Init),TRUE) * ((((Ru5P>=1)&&(a2>=1))&&((GSSG>=1)&&(NADPH>=1)))&&((E4P>=1)&&(Xu5P>=1))))] != FALSE
(forward)formula 1,0,15.9641,334076,1,0,5,1.20338e+06,9,0,690,1.4256e+06,0
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EG(EF(EX((start>=1))))
=> equivalent forward existential formula: [FwdG(Init,E(TRUE U EX((start>=1))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions Transketolase2, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/21/1/22
(forward)formula 2,1,32.6551,421636,1,0,44,1.4874e+06,69,28,1801,1.71094e+06,65
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF((((!(((Pyr>=1)&&(NADH>=1))||((ADP>=1)&&(_1_3_BPG>=1))))||((!(((NADPplus>=2)&&(G6P>=1))&&(b2>=1)))||((Ru5P>=1)&&(a2>=1)))) * AG(((start>=1)&&((ATP>=1)&&(Gluc>=1))))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * ((!(((Pyr>=1)&&(NADH>=1))||((ADP>=1)&&(_1_3_BPG>=1))))||((!(((NADPplus>=2)&&(G6P>=1))&&(b2>=1)))||((Ru5P>=1)&&(a2>=1))))) * !(E(TRUE U !(((start>=1)&&((ATP>=1)&&(Gluc>=1)))))))] != FALSE
(forward)formula 3,0,32.657,421900,1,0,44,1.48747e+06,71,28,1807,1.71105e+06,67
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EX(EF(((start>=1)||(((Ru5P>=1)&&(a1>=2))&&((G6P>=1)&&(b1>=3))))))
=> equivalent forward existential formula: [(FwdU(EY(Init),TRUE) * ((start>=1)||(((Ru5P>=1)&&(a1>=2))&&((G6P>=1)&&(b1>=3)))))] != FALSE
(forward)formula 4,1,32.6748,423220,1,0,46,1.48752e+06,72,29,1810,1.71111e+06,71
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-04 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(EF(((ADP>=1)&&(_1_3_BPG>=1))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U ((ADP>=1)&&(_1_3_BPG>=1)))))] = FALSE
(forward)formula 5,1,32.7589,426124,1,0,47,1.49766e+06,73,30,1810,1.72462e+06,77
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(E(((!(DHAP>=1))||(((Ru5P>=1)&&(a1>=2))||((G6P>=1)&&(b1>=3)))) U ((Pyr>=1)&&(NADH>=1))))
=> equivalent forward existential formula: [(FwdU(Init,((!(DHAP>=1))||(((Ru5P>=1)&&(a1>=2))||((G6P>=1)&&(b1>=3))))) * ((Pyr>=1)&&(NADH>=1)))] = FALSE
Hit Full ! (commute/partial/dont) 14/0/8
(forward)formula 6,0,32.9528,433780,1,0,51,1.54595e+06,81,31,1853,1.75901e+06,81
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EF(!((((Ru5P>=1)&&(a1>=2))||(GSH>=2)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !((((Ru5P>=1)&&(a1>=2))||(GSH>=2))))))] = FALSE
(forward)formula 7,1,33.1254,436420,1,0,52,1.55126e+06,83,31,1859,1.76138e+06,84
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (!(((F6P>=1)&&(ATP>=1))) * AG((EF(((Ru5P>=1)&&(a2>=1))) + ((Ru5P>=1)&&(a2>=1)))))
=> equivalent forward existential formula: ([(Init * ((F6P>=1)&&(ATP>=1)))] = FALSE * [((FwdU(Init,TRUE) * !(((Ru5P>=1)&&(a2>=1)))) * !(E(TRUE U ((Ru5P>=1)&&(a2>=1)))))] = FALSE)
(forward)formula 8,1,33.6255,453316,1,0,55,1.6269e+06,85,33,1859,1.85489e+06,91
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (((ATP>=1)&&(Gluc>=1)) + EF(EX((((Xu5P>=1)&&(R5P>=1))&&((PEP>=1)&&(ADP>=1))))))
=> equivalent forward existential formula: ([(Init * ((ATP>=1)&&(Gluc>=1)))] != FALSE + [(EY(FwdU(Init,TRUE)) * (((Xu5P>=1)&&(R5P>=1))&&((PEP>=1)&&(ADP>=1))))] != FALSE)
(forward)formula 9,0,33.6376,453580,1,0,56,1.62696e+06,87,33,1860,1.85489e+06,92
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(((((((GAP>=1)&&(NADplus>=1))&&(Pi>=1))&&(c2>=1))&&((Ru5P>=1)&&(a2>=1)))&&(((((PEP>=1)&&(ADP>=1))&&(FBP>=1))&&(!((ADP>=1)&&(_1_3_BPG>=1))))&&((Ru5P>=1)&&(a1>=2)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * ((((((GAP>=1)&&(NADplus>=1))&&(Pi>=1))&&(c2>=1))&&((Ru5P>=1)&&(a2>=1)))&&(((((PEP>=1)&&(ADP>=1))&&(FBP>=1))&&(!((ADP>=1)&&(_1_3_BPG>=1))))&&((Ru5P>=1)&&(a1>=2)))))] != FALSE
(forward)formula 10,0,33.6564,454372,1,0,56,1.62738e+06,88,33,1872,1.85491e+06,92
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF((EG((((Pyr>=1)&&(NADH>=1))&&((Xu5P>=1)&&(R5P>=1)))) * AF((((Xu5P>=1)&&(R5P>=1))&&((Ru5P>=1)&&(a1>=2))))))
=> equivalent forward existential formula: [((FwdU(Init,TRUE) * EG((((Pyr>=1)&&(NADH>=1))&&((Xu5P>=1)&&(R5P>=1))))) * !(EG(!((((Xu5P>=1)&&(R5P>=1))&&((Ru5P>=1)&&(a1>=2)))))))] != FALSE
(forward)formula 11,0,33.7305,457540,1,0,57,1.63191e+06,91,34,1878,1.86837e+06,96
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(!(((start>=1)&&((ATP>=7)&&(Lac>=7)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * ((start>=1)&&((ATP>=7)&&(Lac>=7))))] = FALSE
(forward)formula 12,1,33.7314,457540,1,0,57,1.63191e+06,92,34,1880,1.86837e+06,96
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(A((((_3PG>=1)&&(((S7P>=1)&&(GAP>=1))&&(c1>=7)))&&(((NADPplus>=2)&&(G6P>=1))&&(b2>=1))) U EG((DHAP>=1))))
=> equivalent forward existential formula: ([((FwdU(Init,!(EG((DHAP>=1)))) * !((((_3PG>=1)&&(((S7P>=1)&&(GAP>=1))&&(c1>=7)))&&(((NADPplus>=2)&&(G6P>=1))&&(b2>=1))))) * !(EG((DHAP>=1))))] != FALSE + [FwdG(Init,!(EG((DHAP>=1))))] != FALSE)
(forward)formula 13,1,51.8494,928684,1,0,1759,4.4356e+06,103,645,1894,4.59853e+06,3404
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-13 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EF(EG(AG((GAP>=1))))
=> equivalent forward existential formula: [FwdG(FwdU(Init,TRUE),!(E(TRUE U !((GAP>=1)))))] != FALSE
(forward)formula 14,0,51.9017,931588,1,0,1760,4.44807e+06,108,645,1894,4.5988e+06,3407
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(EX((_2PG>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX((_2PG>=1))))] = FALSE
(forward)formula 15,0,52.4081,949276,1,0,1764,4.55964e+06,109,649,1894,4.73184e+06,3412
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-15 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************


BK_STOP 1527285577498

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 9:58:44 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
May 25, 2018 9:58:44 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 9:58:44 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 28 ms
May 25, 2018 9:58:44 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 33 places.
May 25, 2018 9:58:44 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 transitions.
May 25, 2018 9:58:44 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 4 ms
May 25, 2018 9:58:44 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 18 ms
May 25, 2018 9:58:44 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 1 ms
May 25, 2018 9:58:44 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000100.tgz
mv GPPP-PT-C0001N0000000100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is GPPP-PT-C0001N0000000100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r092-blw7-152650004500256"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;