Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.9K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is GPPP-PT-C0100N0000010000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r091-blw7-152650003600326
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-00
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-01
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-02
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-03
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-04
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-05
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-06
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-07
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-08
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-09
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527198534771


BK_STOP 1527198759158

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0100N0000010000 as instance name.
Using GPPP as model name.
Using algorithm or tool bmdt.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
Known tools are: [{'Time': 1458273, 'Memory': 15939.08, 'Tool': 'lola'}, {'Time': 1463204, 'Memory': 15951.07, 'Tool': 'lola'}, {'Time': 2305300, 'Memory': 15936.86, 'Tool': 'marcie'}].
Learned tools are: [{'Tool': 'itstools'}].
CTLFireability lola GPPP-PT-C0100N0000010000...

----- Start make prepare stderr -----
Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
GPPP-PT-C0100N0000010000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
GPPP-PT-C0100N0000010000: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stderr -----
----- Start make result stdout -----
CTLFireability @ GPPP-PT-C0100N0000010000 @ 3539 seconds
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
lola: LoLA will run for 3539 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000010000-CTLFireability.task
lola: NOT((E (F ((FIREABLE(generate) AND FIREABLE(remove) AND FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Hexokinase)))) OR A (G (E (F (FIREABLE(Ru5P_epimerase))))))) : E (F (NOT(((NOT FIREABLE(Phosphoglucose_isomerase) OR NOT FIREABLE(TIM_backward)) AND E (F (FIREABLE(generate))))))) : E (F (A (G ((FIREABLE(Transketolase2) OR FIREABLE(Glutathione_oxidation)))))) : E (F (E (G (E (F (FIREABLE(Enolase))))))) : E (X (E (F (E (F (FIREABLE(remove))))))) : ((A (F (FIREABLE(G6P_dehydrogenase))) OR E (G (A (F (FIREABLE(TIM_forward)))))) OR A (X (FIREABLE(Aldolase)))) : (FIREABLE(Phosphoglycerate_mutase) OR NOT(E (F ((FIREABLE(Aldolase) AND FIREABLE(remove)))))) : NOT((A (G (E (X (FIREABLE(Hexokinase))))) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Glutathione_reductose)))) : NOT((E (F (E (G (FIREABLE(Phosphoglycerate_mutase))))) AND (NOT FIREABLE(Transketolase1) OR NOT FIREABLE(Transaldolase)))) : (NOT(A (F (FIREABLE(TIM_forward)))) OR ((A (X ((FIREABLE(TIM_forward)))) AND FIREABLE(Glutathione_reductose)) AND NOT FIREABLE(TIM_forward))) : NOT(NOT(A (G ((FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(remove)))))) : (A (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2)))) OR NOT(NOT(E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Aldolase))))))) : E (X (E (F (A (X (FIREABLE(remove))))))) : A (X (A (F ((FIREABLE(Aldolase) OR FIREABLE(Transaldolase) OR FIREABLE(Transketolase2) OR FIREABLE(GAP_dehydrogenase)))))) : E (F (NOT((E (X (FIREABLE(G6P_dehydrogenase))) OR NOT FIREABLE(Ru5P_isomerase))))) : NOT(A (X (NOT(E (F (FIREABLE(Pyruvate_kinase)))))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: NOT((E (F ((FIREABLE(generate) AND FIREABLE(remove) AND FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Hexokinase)))) OR A (G (E (F (FIREABLE(Ru5P_epimerase)))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(generate) OR NOT FIREABLE(remove) OR NOT FIREABLE(Phosphoglucose_isomerase) OR NOT FIREABLE(Hexokinase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: 4322360 markings, 9847142 edges, 864472 markings/sec, 0 secs
lola: 8365842 markings, 19645573 edges, 808696 markings/sec, 5 secs
lola: 12009227 markings, 28564201 edges, 728677 markings/sec, 10 secs
lola: 15839148 markings, 38214409 edges, 765984 markings/sec, 15 secs
lola: 20152652 markings, 44006323 edges, 862701 markings/sec, 20 secs
lola: 24208780 markings, 48496737 edges, 811226 markings/sec, 25 secs
lola: 28750307 markings, 53993498 edges, 908305 markings/sec, 30 secs
lola: 32237447 markings, 62445916 edges, 697428 markings/sec, 35 secs
lola: 35214907 markings, 69987037 edges, 595492 markings/sec, 40 secs
lola: 38249613 markings, 77306356 edges, 606941 markings/sec, 45 secs
lola: 41163199 markings, 80731882 edges, 582717 markings/sec, 50 secs
lola: 44018968 markings, 84650099 edges, 571154 markings/sec, 55 secs
lola: 47579296 markings, 93371196 edges, 712066 markings/sec, 60 secs
lola: 51789410 markings, 101315918 edges, 842023 markings/sec, 65 secs
lola: 55104853 markings, 109442588 edges, 663089 markings/sec, 70 secs
lola: 58380245 markings, 117720065 edges, 655078 markings/sec, 75 secs
lola: 61369779 markings, 124868170 edges, 597907 markings/sec, 80 secs
lola: 64253834 markings, 128273789 edges, 576811 markings/sec, 85 secs
lola: 66807802 markings, 131104488 edges, 510794 markings/sec, 90 secs
lola: 69838240 markings, 138963401 edges, 606088 markings/sec, 95 secs
lola: 73768696 markings, 146528777 edges, 786091 markings/sec, 100 secs
lola: 77204198 markings, 155109416 edges, 687100 markings/sec, 105 secs
lola: 81341402 markings, 162511816 edges, 827441 markings/sec, 110 secs
lola: 84601320 markings, 170443842 edges, 651984 markings/sec, 115 secs
lola: 87805026 markings, 178525381 edges, 640741 markings/sec, 120 secs
lola: 90874010 markings, 186412604 edges, 613797 markings/sec, 125 secs
lola: 94011339 markings, 193988745 edges, 627466 markings/sec, 130 secs
lola: 97241890 markings, 197786442 edges, 646110 markings/sec, 135 secs
lola: 100325832 markings, 201678530 edges, 616788 markings/sec, 140 secs
lola: 103336293 markings, 209678231 edges, 602092 markings/sec, 145 secs
lola: 107093587 markings, 216440169 edges, 751459 markings/sec, 150 secs
lola: 110223691 markings, 224477984 edges, 626021 markings/sec, 155 secs
lola: 113941661 markings, 231745420 edges, 743594 markings/sec, 160 secs
lola: 117240321 markings, 240074009 edges, 659732 markings/sec, 165 secs
lola: 121329488 markings, 247559755 edges, 817833 markings/sec, 170 secs
lola: 124221193 markings, 255061513 edges, 578341 markings/sec, 175 secs
lola: 127083321 markings, 262363316 edges, 572426 markings/sec, 180 secs
lola: 130125761 markings, 269992238 edges, 608488 markings/sec, 185 secs
lola: 132850741 markings, 277202547 edges, 544996 markings/sec, 190 secs
lola: 135386279 markings, 284154535 edges, 507108 markings/sec, 195 secs
lola: 138211300 markings, 291578570 edges, 565004 markings/sec, 200 secs
lola: 140899429 markings, 298489251 edges, 537626 markings/sec, 205 secs
lola: 143920429 markings, 306131676 edges, 604200 markings/sec, 210 secs
lola: 146847202 markings, 313661502 edges, 585355 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: caught signal User defined signal 1 - aborting LoLA
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '%'
Aborted (core dumped)
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000010000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000010000.tgz
mv GPPP-PT-C0100N0000010000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is GPPP-PT-C0100N0000010000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r091-blw7-152650003600326"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;