Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..............
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.9K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-full
Input is GPPP-PT-C0100N0000010000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r090-blw7-152650001300326
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-00
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-01
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-02
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-03
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-04
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-05
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-06
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-07
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-08
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-09
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527068002074


BK_STOP 1527068226272

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using GPPP-PT-C0100N0000010000 as instance name.
Using GPPP as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': False, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': True, 'Source Place': False, 'Sink Place': False, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': False, 'Deadlock': None, 'Reversible': None, 'Quasi Live': True, 'Live': None}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 1458273, 'Memory': 15939.08, 'Tool': 'lola'}, {'Time': 1463204, 'Memory': 15951.07, 'Tool': 'lola'}, {'Time': 2305300, 'Memory': 15936.86, 'Tool': 'marcie'}].
Learned tools are: [{'Tool': 'itstools'}].
CTLFireability lola GPPP-PT-C0100N0000010000...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
GPPP-PT-C0100N0000010000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
GPPP-PT-C0100N0000010000: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
CTLFireability @ GPPP-PT-C0100N0000010000 @ 3540 seconds
make: [verify] Error 134 (ignored)
----- Start make result stderr -----
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000010000-CTLFireability.task
lola: NOT((E (F ((FIREABLE(generate) AND FIREABLE(remove) AND FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Hexokinase)))) OR A (G (E (F (FIREABLE(Ru5P_epimerase))))))) : E (F (NOT(((NOT FIREABLE(Phosphoglucose_isomerase) OR NOT FIREABLE(TIM_backward)) AND E (F (FIREABLE(generate))))))) : E (F (A (G ((FIREABLE(Transketolase2) OR FIREABLE(Glutathione_oxidation)))))) : E (F (E (G (E (F (FIREABLE(Enolase))))))) : E (X (E (F (E (F (FIREABLE(remove))))))) : ((A (F (FIREABLE(G6P_dehydrogenase))) OR E (G (A (F (FIREABLE(TIM_forward)))))) OR A (X (FIREABLE(Aldolase)))) : (FIREABLE(Phosphoglycerate_mutase) OR NOT(E (F ((FIREABLE(Aldolase) AND FIREABLE(remove)))))) : NOT((A (G (E (X (FIREABLE(Hexokinase))))) AND (NOT FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Glutathione_reductose)))) : NOT((E (F (E (G (FIREABLE(Phosphoglycerate_mutase))))) AND (NOT FIREABLE(Transketolase1) OR NOT FIREABLE(Transaldolase)))) : (NOT(A (F (FIREABLE(TIM_forward)))) OR ((A (X ((FIREABLE(TIM_forward)))) AND FIREABLE(Glutathione_reductose)) AND NOT FIREABLE(TIM_forward))) : NOT(NOT(A (G ((FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(remove)))))) : (A (F ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Transketolase2)))) OR NOT(NOT(E (F ((FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Aldolase))))))) : E (X (E (F (A (X (FIREABLE(remove))))))) : A (X (A (F ((FIREABLE(Aldolase) OR FIREABLE(Transaldolase) OR FIREABLE(Transketolase2) OR FIREABLE(GAP_dehydrogenase)))))) : E (F (NOT((E (X (FIREABLE(G6P_dehydrogenase))) OR NOT FIREABLE(Ru5P_isomerase))))) : NOT(A (X (NOT(E (F (FIREABLE(Pyruvate_kinase)))))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: NOT((E (F ((FIREABLE(generate) AND FIREABLE(remove) AND FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Hexokinase)))) OR A (G (E (F (FIREABLE(Ru5P_epimerase)))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(generate) OR NOT FIREABLE(remove) OR NOT FIREABLE(Phosphoglucose_isomerase) OR NOT FIREABLE(Hexokinase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: 4529120 markings, 10382505 edges, 905824 markings/sec, 0 secs
lola: 8690745 markings, 20415312 edges, 832325 markings/sec, 5 secs
lola: 12515689 markings, 29913931 edges, 764989 markings/sec, 10 secs
lola: 15762188 markings, 38027858 edges, 649300 markings/sec, 15 secs
lola: 19632320 markings, 43410084 edges, 774026 markings/sec, 20 secs
lola: 23000052 markings, 47210915 edges, 673546 markings/sec, 25 secs
lola: 26901910 markings, 51361442 edges, 780372 markings/sec, 30 secs
lola: 29947762 markings, 56884629 edges, 609170 markings/sec, 35 secs
lola: 33179324 markings, 64773250 edges, 646312 markings/sec, 40 secs
lola: 36083448 markings, 72334574 edges, 580825 markings/sec, 45 secs
lola: 38806186 markings, 77922924 edges, 544548 markings/sec, 50 secs
lola: 41608389 markings, 81227004 edges, 560441 markings/sec, 55 secs
lola: 44332378 markings, 85432323 edges, 544798 markings/sec, 60 secs
lola: 48332963 markings, 94243525 edges, 800117 markings/sec, 65 secs
lola: 52121303 markings, 102142959 edges, 757668 markings/sec, 70 secs
lola: 55698317 markings, 110957543 edges, 715403 markings/sec, 75 secs
lola: 59065965 markings, 119532735 edges, 673530 markings/sec, 80 secs
lola: 62529621 markings, 126149320 edges, 692731 markings/sec, 85 secs
lola: 66613806 markings, 130889201 edges, 816837 markings/sec, 90 secs
lola: 69918888 markings, 139181527 edges, 661016 markings/sec, 95 secs
lola: 73952696 markings, 146992669 edges, 806762 markings/sec, 100 secs
lola: 77772433 markings, 155776450 edges, 763947 markings/sec, 105 secs
lola: 81827300 markings, 163720369 edges, 810973 markings/sec, 110 secs
lola: 85359666 markings, 172376993 edges, 706473 markings/sec, 115 secs
lola: 88761738 markings, 180949413 edges, 680414 markings/sec, 120 secs
lola: 92122053 markings, 189598378 edges, 672063 markings/sec, 125 secs
lola: 95890256 markings, 196222984 edges, 753641 markings/sec, 130 secs
lola: 99163811 markings, 199909611 edges, 654711 markings/sec, 135 secs
lola: 102494591 markings, 207453120 edges, 666156 markings/sec, 140 secs
lola: 106350676 markings, 214396816 edges, 771217 markings/sec, 145 secs
lola: 109414448 markings, 222794653 edges, 612754 markings/sec, 150 secs
lola: 113258452 markings, 230014809 edges, 768801 markings/sec, 155 secs
lola: 116754595 markings, 238849818 edges, 699229 markings/sec, 160 secs
lola: 120572444 markings, 245720210 edges, 763570 markings/sec, 165 secs
lola: 123320997 markings, 252662531 edges, 549711 markings/sec, 170 secs
lola: 126373096 markings, 260518629 edges, 610420 markings/sec, 175 secs
lola: 129528668 markings, 268422645 edges, 631114 markings/sec, 180 secs
lola: 132427871 markings, 276036144 edges, 579841 markings/sec, 185 secs
lola: 135119233 markings, 283443061 edges, 538272 markings/sec, 190 secs
lola: 138126136 markings, 291360618 edges, 601381 markings/sec, 195 secs
lola: 141086230 markings, 298957655 edges, 592019 markings/sec, 200 secs
lola: 144228482 markings, 306952324 edges, 628450 markings/sec, 205 secs
lola: 147320178 markings, 314952929 edges, 618339 markings/sec, 210 secs
lola: 150044047 markings, 322264547 edges, 544774 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: caught signal User defined signal 1 - aborting LoLA
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '%'
Aborted (core dumped)
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000010000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="irma4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000010000.tgz
mv GPPP-PT-C0100N0000010000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-full"
echo " Input is GPPP-PT-C0100N0000010000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r090-blw7-152650001300326"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;