Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............
/home/mcc/execution
total 192K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool lola
Input is GPPP-PT-C0100N0000100000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r088-blw7-152649998400333
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-00
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-01
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-02
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-03
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-04
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-05
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-06
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-07
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-08
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-09
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000100000-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1526744842635

info: Time: 3600 - MCC
===========================================================================================
prep: translating GPPP-PT-C0100N0000100000 Petri net model.pnml into LoLA format
===========================================================================================
prep: translating PT Petri net complete
prep: check for too many tokens
===========================================================================================
prep: translating GPPP-PT-C0100N0000100000 formula CTLFireability into LoLA format
===========================================================================================
prep: translating PT formula complete
vrfy: Checking CTLFireability @ GPPP-PT-C0100N0000100000 @ 3570 seconds
lola: LoLA will run for 3570 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: Size of bit vector: 1056
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000100000-CTLFireability.task
lola: E ((E (F ((FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Phosphoglucose_isomerase)))) U A (F ((FIREABLE(Aldolase) AND FIREABLE(Enolase)))))) : A (X ((FIREABLE(generate) OR E (F ((FIREABLE(Transketolase1) AND FIREABLE(Phosphoglucose_isomerase))))))) : (E (G (FIREABLE(Phosphoglycerate_kinase))) OR (((A (X (FIREABLE(Enolase))) AND FIREABLE(GAP_dehydrogenase)) AND (NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Transketolase2) AND FIREABLE(TIM_backward))) OR A (G ((NOT FIREABLE(Pyruvate_kinase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Enolase))))))) : (A (F (E (X ((FIREABLE(TIM_backward) OR FIREABLE(Transketolase1)))))) OR ((A (X (FIREABLE(Transketolase1))) AND (A (G (FIREABLE(G6P_dehydrogenase))) OR ((FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Glutathione_oxidation)) AND FIREABLE(Ru5P_isomerase)))) AND A (F (FIREABLE(Transketolase2))))) : E (F ((A ((FIREABLE(Transketolase1) U FIREABLE(Phosphoglucose_isomerase))) AND ((FIREABLE(G6P_dehydrogenase) OR FIREABLE(Hexokinase) OR FIREABLE(Ru5P_epimerase)) AND FIREABLE(Phosphoglycerate_kinase))))) : E (G (E (F ((NOT FIREABLE(Hexokinase) AND NOT FIREABLE(GAP_dehydrogenase)))))) : E (F (A (F (E (G (FIREABLE(Lactate_dehydrogenase))))))) : E (G (A (F (((FIREABLE(Hexokinase) AND FIREABLE(Transketolase2)) OR NOT FIREABLE(Phosphofructokinase)))))) : NOT(A (F ((FIREABLE(TIM_forward) OR FIREABLE(GAP_dehydrogenase))))) : E (X (E ((NOT FIREABLE(remove) U FIREABLE(Lactate_dehydrogenase))))) : (A (X (A (F ((FIREABLE(Transketolase2) OR FIREABLE(Aldolase)))))) OR A (F (((NOT FIREABLE(Phosphoglucose_isomerase) AND NOT FIREABLE(Transaldolase)) AND E (X (FIREABLE(G6P_dehydrogenase))))))) : E ((A (F (NOT FIREABLE(G6P_dehydrogenase))) U A ((FIREABLE(Phosphoglycerate_kinase) U FIREABLE(remove))))) : (NOT(E (G ((NOT FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(TIM_forward))))) OR FIREABLE(Pyruvate_kinase)) : NOT(E (X (A (F (FIREABLE(TIM_forward)))))) : E (F (A ((FIREABLE(generate) U FIREABLE(Lactate_dehydrogenase))))) : (A (F (E ((FIREABLE(TIM_backward) U FIREABLE(Ru5P_epimerase))))) OR A (F (((FIREABLE(TIM_backward) OR FIREABLE(G6P_dehydrogenase) OR FIREABLE(remove)) AND E (X (FIREABLE(Transaldolase)))))))
lola: rewrite Frontend/Parser/formula_rewrite.k:251
lola: rewrite Frontend/Parser/formula_rewrite.k:251
lola: rewrite Frontend/Parser/formula_rewrite.k:455
lola: rewrite Frontend/Parser/formula_rewrite.k:323
lola: rewrite Frontend/Parser/formula_rewrite.k:332
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:326
lola: rewrite Frontend/Parser/formula_rewrite.k:329
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:326
lola: rewrite Frontend/Parser/formula_rewrite.k:335
lola: rewrite Frontend/Parser/formula_rewrite.k:323
lola: rewrite Frontend/Parser/formula_rewrite.k:332
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 223 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (X ((FIREABLE(generate) OR E (F ((FIREABLE(Transketolase1) AND FIREABLE(Phosphoglucose_isomerase)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:719
lola: rewrite Frontend/Parser/formula_rewrite.k:734
lola: processed formula: AX((FIREABLE(generate) OR E(TRUE U (FIREABLE(Transketolase1) AND FIREABLE(Phosphoglucose_isomerase)))))
lola: processed formula length: 103
lola: 16 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 1361695 markings, 7730366 edges, 272339 markings/sec, 0 secs
lola: 2659016 markings, 15132734 edges, 259464 markings/sec, 5 secs
lola: 3926812 markings, 22429853 edges, 253559 markings/sec, 10 secs
lola: 5090550 markings, 29998485 edges, 232748 markings/sec, 15 secs
lola: 6204061 markings, 37113840 edges, 222702 markings/sec, 20 secs
lola: 7482894 markings, 44148183 edges, 255767 markings/sec, 25 secs
lola: 8702074 markings, 51103449 edges, 243836 markings/sec, 30 secs
lola: 9809536 markings, 58174143 edges, 221492 markings/sec, 35 secs
lola: 10849880 markings, 64912620 edges, 208069 markings/sec, 40 secs
lola: 11984630 markings, 71979908 edges, 226950 markings/sec, 45 secs
lola: 13001182 markings, 78824592 edges, 203310 markings/sec, 50 secs
lola: 14140383 markings, 85657523 edges, 227840 markings/sec, 55 secs
lola: 15266113 markings, 92446081 edges, 225146 markings/sec, 60 secs
lola: 16280795 markings, 98955689 edges, 202936 markings/sec, 65 secs
lola: 17392530 markings, 105639293 edges, 222347 markings/sec, 70 secs
lola: 18562735 markings, 113403357 edges, 234041 markings/sec, 75 secs
lola: 19654329 markings, 120723460 edges, 218319 markings/sec, 80 secs
lola: 20723657 markings, 127895700 edges, 213866 markings/sec, 85 secs
lola: 21779358 markings, 135314027 edges, 211140 markings/sec, 90 secs
lola: 22734776 markings, 142483858 edges, 191084 markings/sec, 95 secs
lola: 23674619 markings, 149446790 edges, 187969 markings/sec, 100 secs
lola: 24751581 markings, 156447813 edges, 215392 markings/sec, 105 secs
lola: 25780314 markings, 163134863 edges, 205747 markings/sec, 110 secs
lola: 26742629 markings, 170049545 edges, 192463 markings/sec, 115 secs
lola: 27609844 markings, 176696062 edges, 173443 markings/sec, 120 secs
lola: 28492174 markings, 183075782 edges, 176466 markings/sec, 125 secs
lola: 29442256 markings, 189971451 edges, 190016 markings/sec, 130 secs
lola: 30302579 markings, 196616189 edges, 172065 markings/sec, 135 secs
lola: 31207445 markings, 203081415 edges, 180973 markings/sec, 140 secs
lola: 32137084 markings, 209824198 edges, 185928 markings/sec, 145 secs
lola: 33067484 markings, 216114464 edges, 186080 markings/sec, 150 secs
lola: 33883034 markings, 222300646 edges, 163110 markings/sec, 155 secs
lola: 34804638 markings, 228690154 edges, 184321 markings/sec, 160 secs
lola: 35888684 markings, 236067974 edges, 216809 markings/sec, 165 secs
lola: 36955957 markings, 243225491 edges, 213455 markings/sec, 170 secs
lola: 37995321 markings, 250194859 edges, 207873 markings/sec, 175 secs
lola: 39021986 markings, 257207496 edges, 205333 markings/sec, 180 secs
lola: 39973776 markings, 264348690 edges, 190358 markings/sec, 185 secs
lola: 40875166 markings, 271110387 edges, 180278 markings/sec, 190 secs
lola: 41890628 markings, 277932986 edges, 203092 markings/sec, 195 secs
lola: 42909778 markings, 284557946 edges, 203830 markings/sec, 200 secs
lola: 43883190 markings, 291262700 edges, 194682 markings/sec, 205 secs
lola: 44767951 markings, 297780284 edges, 176952 markings/sec, 210 secs
lola: 45587146 markings, 304068076 edges, 163839 markings/sec, 215 secs
lola: local time limit reached - aborting
lola:
preliminary result: unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown
lola: memory consumption: 3609784 KB
lola: time consumption: 223 seconds
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 1 will run for 223 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (E (G (FIREABLE(Phosphoglycerate_kinase))) OR ((A (X (FIREABLE(Enolase))) AND (FIREABLE(GAP_dehydrogenase) AND (NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Transketolase2) AND FIREABLE(TIM_backward)))) OR A (G ((NOT FIREABLE(Pyruvate_kinase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Enolase)))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 1 will run for 223 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (FIREABLE(GAP_dehydrogenase) AND (NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Transketolase2) AND FIREABLE(TIM_backward)))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: rewrite Frontend/Parser/formula_rewrite.k:700
lola: processed formula: (FIREABLE(GAP_dehydrogenase) AND (NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Transketolase2) AND FIREABLE(TIM_backward)))
lola: processed formula length: 125
lola: 15 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: preprocessing
lola: The net violates the given property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================
lola: subprocess 2 will run for 239 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (G (FIREABLE(Phosphoglycerate_kinase)))
lola: ========================================
lola: SUBTASK
lola: checking possible preservation
lola: processed formula: E (G (FIREABLE(Phosphoglycerate_kinase)))
lola: processed formula length: 41
lola: 14 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space / EG)
lola: state space: using search routine for EG formula (--search=depth)
lola: state space: using EG preserving stubborn set method (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: state space / EG
lola: The predicate is not possibly preserved.
lola: 1 markings, 0 edges
lola: ========================================
lola: subprocess 3 will run for 257 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Pyruvate_kinase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Enolase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G ((NOT FIREABLE(Pyruvate_kinase) OR (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Enolase)))))
lola: processed formula length: 95
lola: 16 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: (FIREABLE(Pyruvate_kinase) AND (NOT FIREABLE(GAP_dehydrogenase) OR NOT FIREABLE(Enolase)))
lola: state equation: Generated DNF with 15 literals and 5 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000100000-CTLFireability-3-0.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 18 markings, 17 edges
lola: lola: SUBRESULT
lola: result: no
lola: The Boolean predicate is false.
========================================
lola: ========================================

FORMULA GPPP-PT-C0100N0000100000-CTLFireability-2 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 2 will run for 239 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (A (F (E (X ((FIREABLE(TIM_backward) OR FIREABLE(Transketolase1)))))) OR (A (X (FIREABLE(Transketolase1))) AND ((A (G (FIREABLE(G6P_dehydrogenase))) OR ((FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Glutathione_oxidation)) AND FIREABLE(Ru5P_isomerase))) AND A (F (FIREABLE(Transketolase2))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 2 will run for 239 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: ((FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Glutathione_oxidation)) AND FIREABLE(Ru5P_isomerase))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: ((FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Glutathione_oxidation)) AND FIREABLE(Ru5P_isomerase))
lola: processed formula length: 102
lola: 14 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: preprocessing
lola: The net violates the given property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================
lola: subprocess 3 will run for 257 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (F (FIREABLE(Transketolase2)))
lola: ========================================
lola: SUBTASK
lola: checking eventual occurrence
lola: rewrite Frontend/Parser/formula_rewrite.k:659
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: NOT FIREABLE(Transketolase2)
lola: processed formula length: 28
lola: 16 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space / EG)
lola: state space: using search routine for EG formula (--search=depth)
lola: state space: using EG preserving stubborn set method (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: state space / EG
lola: The predicate does not eventually occur.
lola: 2405 markings, 2405 edges
lola: ========================================
lola: subprocess 4 will run for 278 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (F (E (X ((FIREABLE(TIM_backward) OR FIREABLE(Transketolase1))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:721
lola: rewrite Frontend/Parser/formula_rewrite.k:732
lola: processed formula: A(TRUE U EX((FIREABLE(TIM_backward) OR FIREABLE(Transketolase1))))
lola: processed formula length: 67
lola: 16 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 2584832 markings, 4258357 edges, 516966 markings/sec, 0 secs
lola: 4953441 markings, 8180733 edges, 473722 markings/sec, 5 secs
lola: 7249023 markings, 11985531 edges, 459116 markings/sec, 10 secs
lola: 9508522 markings, 15732760 edges, 451900 markings/sec, 15 secs
lola: 11733972 markings, 19425168 edges, 445090 markings/sec, 20 secs
lola: 13824760 markings, 22895036 edges, 418158 markings/sec, 25 secs
lola: 15982036 markings, 26475704 edges, 431455 markings/sec, 30 secs
lola: 18150490 markings, 30075429 edges, 433691 markings/sec, 35 secs
lola: 20299479 markings, 33644191 edges, 429798 markings/sec, 40 secs
lola: 22439257 markings, 37197365 edges, 427956 markings/sec, 45 secs
lola: 24565789 markings, 40728985 edges, 425306 markings/sec, 50 secs
lola: 26681581 markings, 44243258 edges, 423158 markings/sec, 55 secs
lola: 28786451 markings, 47739819 edges, 420974 markings/sec, 60 secs
lola: 30879994 markings, 51218144 edges, 418709 markings/sec, 65 secs
lola: 32966255 markings, 54684179 edges, 417252 markings/sec, 70 secs
lola: 35041708 markings, 58132216 edges, 415091 markings/sec, 75 secs
lola: 37100757 markings, 61553541 edges, 411810 markings/sec, 80 secs
lola: 39152891 markings, 64964049 edges, 410427 markings/sec, 85 secs
lola: 41198602 markings, 68363714 edges, 409142 markings/sec, 90 secs
lola: 43241206 markings, 71758163 edges, 408521 markings/sec, 95 secs
lola: 45281032 markings, 75147986 edges, 407965 markings/sec, 100 secs
lola: 47309118 markings, 78518876 edges, 405617 markings/sec, 105 secs
lola: 49331512 markings, 81880335 edges, 404479 markings/sec, 110 secs
lola: 51349935 markings, 85235088 edges, 403685 markings/sec, 115 secs
lola: 53361982 markings, 88579171 edges, 402409 markings/sec, 120 secs
lola: 55364719 markings, 91908475 edges, 400547 markings/sec, 125 secs
lola: 57364035 markings, 95232241 edges, 399863 markings/sec, 130 secs
lola: 59366057 markings, 98560355 edges, 400404 markings/sec, 135 secs
lola: 61363257 markings, 101880333 edges, 399440 markings/sec, 140 secs
lola: 63353129 markings, 105188124 edges, 397974 markings/sec, 145 secs
lola: 65336526 markings, 108485895 edges, 396679 markings/sec, 150 secs
lola: 67327470 markings, 111795477 edges, 398189 markings/sec, 155 secs
lola: 69307694 markings, 115087975 edges, 396045 markings/sec, 160 secs
lola: 71282911 markings, 118372084 edges, 395043 markings/sec, 165 secs
lola: 73257121 markings, 121654630 edges, 394842 markings/sec, 170 secs
lola: 75228655 markings, 124932556 edges, 394307 markings/sec, 175 secs
lola: 77199999 markings, 128210100 edges, 394269 markings/sec, 180 secs
lola: 79163891 markings, 131475349 edges, 392778 markings/sec, 185 secs
lola: 81123678 markings, 134734621 edges, 391957 markings/sec, 190 secs
lola: 83075853 markings, 137980171 edges, 390435 markings/sec, 195 secs
lola: 85027698 markings, 141226077 edges, 390369 markings/sec, 200 secs
lola: 86971248 markings, 144458230 edges, 388710 markings/sec, 205 secs
lola: 88910267 markings, 147682906 edges, 387804 markings/sec, 210 secs
lola: 90860696 markings, 150925513 edges, 390086 markings/sec, 215 secs
lola: 92806073 markings, 154160591 edges, 389075 markings/sec, 220 secs
lola: 94745605 markings, 157386032 edges, 387906 markings/sec, 225 secs
lola: 96673402 markings, 160592913 edges, 385559 markings/sec, 230 secs
lola: local time limit reached - aborting
lola:
preliminary result: unknown unknown no unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown
lola: caught signal User defined signal 1 - aborting LoLA
lola:
preliminary result: unknown unknown no unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown unknown
lola: memory consumption: 14284 KB
lola: time consumption: 463 seconds
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 3 will run for 239 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (X (E ((NOT FIREABLE(remove) U FIREABLE(Lactate_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:726
lola: rewrite Frontend/Parser/formula_rewrite.k:721
lola: processed formula: EX(E(NOT FIREABLE(remove) U FIREABLE(Lactate_dehydrogenase)))
lola: processed formula length: 61
lola: 16 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: 4855 markings, 5882 edges
lola: ========================================

FORMULA GPPP-PT-C0100N0000100000-CTLFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 4 will run for 258 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (A (X (A (F ((FIREABLE(Transketolase2) OR FIREABLE(Aldolase)))))) OR A (F (((NOT FIREABLE(Phosphoglucose_isomerase) AND NOT FIREABLE(Transaldolase)) AND E (X (FIREABLE(G6P_dehydrogenase)))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 4 will run for 258 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (X (A (F ((FIREABLE(Transketolase2) OR FIREABLE(Aldolase))))))
lola: ========================================
lola: SUBTASK
lola: checking eventual occurrence from all successors
lola: rewrite Frontend/Parser/formula_rewrite.k:664
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: (NOT FIREABLE(Transketolase2) AND NOT FIREABLE(Aldolase))
lola: processed formula length: 57
lola: 16 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space /EXEG)
lola: state space: using reachability graph (EXEG version) (--search=depth)
lola: state space: using invisibility based stubborn set method (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: state space /EXEG
lola: The predicate does not eventually occur from all successors.
lola: 2795 markings, 2795 edges
lola: ========================================
lola: subprocess 5 will run for 282 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (F (((NOT FIREABLE(Phosphoglucose_isomerase) AND NOT FIREABLE(Transaldolase)) AND E (X (FIREABLE(G6P_dehydrogenase))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:721
lola: rewrite Frontend/Parser/formula_rewrite.k:732
lola: processed formula: A(TRUE U ((NOT FIREABLE(Phosphoglucose_isomerase) AND NOT FIREABLE(Transaldolase)) AND EX(FIREABLE(G6P_dehydrogenase))))
lola: processed formula length: 120
lola: 16 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: 802 markings, 801 edges
lola: ========================================
lola: SUBRESULT
lola: result: yes
lola: The Boolean predicate is true.
lola: ========================================

FORMULA GPPP-PT-C0100N0000100000-CTLFireability-10 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 5 will run for 282 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (X (E (G (NOT FIREABLE(TIM_forward)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:724
lola: rewrite Frontend/Parser/formula_rewrite.k:734
lola: rewrite Frontend/Parser/formula_rewrite.k:300
lola: processed formula: AX(NOT(A(TRUE U FIREABLE(TIM_forward))))
lola: processed formula length: 40
lola: 17 rewrites
lola: closed formula file GPPP-PT-C0100N0000100000-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 2722264 markings, 7453550 edges, 544453 markings/sec, 0 secs
lola: 5136762 markings, 14490705 edges, 482900 markings/sec, 5 secs
lola: 7358707 markings, 21153192 edges, 444389 markings/sec, 10 secs
lola: 9529908 markings, 27716820 edges, 434240 markings/sec, 15 secs
lola: 11702286 markings, 34244805 edges, 434476 markings/sec, 20 secs
lola: 13833165 markings, 40668751 edges, 426176 markings/sec, 25 secs
lola: 15740494 markings, 46711559 edges, 381466 markings/sec, 30 secs
lola: 17879320 markings, 53134141 edges, 427765 markings/sec, 35 secs
lola: 19790975 markings, 59075680 edges, 382331 markings/sec, 40 secs
lola: 21875790 markings, 65458014 edges, 416963 markings/sec, 45 secs
lola: 23685273 markings, 71174385 edges, 361897 markings/sec, 50 secs
lola: 25772296 markings, 77419674 edges, 417405 markings/sec, 55 secs
lola: 27501141 markings, 82957427 edges, 345769 markings/sec, 60 secs
lola: 29529952 markings, 89058974 edges, 405762 markings/sec, 65 secs
lola: 31325450 markings, 94739989 edges, 359100 markings/sec, 70 secs
lola: 33030046 markings, 100200892 edges, 340919 markings/sec, 75 secs
lola: 35091066 markings, 106338321 edges, 412204 markings/sec, 80 secs
lola: 36841729 markings, 111918366 edges, 350133 markings/sec, 85 secs
lola: 38516586 markings, 117301140 edges, 334971 markings/sec, 90 secs
lola: 40518023 markings, 123294835 edges, 400287 markings/sec, 95 secs
lola: 42316499 markings, 128980280 edges, 359695 markings/sec, 100 secs
lola: 44010004 markings, 134392718 edges, 338701 markings/sec, 105 secs
lola: 45681163 markings, 139726548 edges, 334232 markings/sec, 110 secs
lola: 47758997 markings, 145945865 edges, 415567 markings/sec, 115 secs
lola: 49487378 markings, 151437989 edges, 345676 markings/sec, 120 secs
lola: 51116689 markings, 156706023 edges, 325862 markings/sec, 125 secs
lola: 52814824 markings, 162067493 edges, 339627 markings/sec, 130 secs
lola: 54863557 markings, 168233574 edges, 409747 markings/sec, 135 secs
lola: 56579424 markings, 173699858 edges, 343173 markings/sec, 140 secs
lola: 58201095 markings, 178942578 edges, 324334 markings/sec, 145 secs
lola: 59839925 markings, 184206311 edges, 327766 markings/sec, 150 secs
lola: 61831282 markings, 190127164 edges, 398271 markings/sec, 155 secs
lola: 63624948 markings, 195805137 edges, 358733 markings/sec, 160 secs
lola: 65303873 markings, 201178360 edges, 335785 markings/sec, 165 secs
lola: 66910284 markings, 206366313 edges, 321282 markings/sec, 170 secs
lola: 68476639 markings, 211453558 edges, 313271 markings/sec, 175 secs
lola: 70521508 markings, 217515378 edges, 408974 markings/sec, 180 secs
lola: 72296910 markings, 223139108 edges, 355080 markings/sec, 185 secs
lola: 73978625 markings, 228549497 edges, 336343 markings/sec, 190 secs
lola: 75625245 markings, 233868280 edges, 329324 markings/sec, 195 secs
lola: 77280520 markings, 239211992 edges, 331055 markings/sec, 200 secs
lola: 79242243 markings, 245067847 edges, 392345 markings/sec, 205 secs
lola: 81144813 markings, 251025265 edges, 380514 markings/sec, 210 secs
lola: 82861733 markings, 256551536 edges, 343384 markings/sec, 215 secs
lola: 84498179 markings, 261842007 edges, 327289 markings/sec, 220 secs
lola: 86103878 markings, 267028682 edges, 321140 markings/sec, 225 secs
lola: 87626555 markings, 271969797 edges, 304535 markings/sec, 230 secs
lola: 89620306 markings, 277859735 edges, 398750 markings/sec, 235 secs
lola: 91352175 markings, 283346645 edges, 346374 markings/sec, 240 secs
lola: 92982685 markings, 288560136 edges, 326102 markings/sec, 245 secs
lola: 94529493 markings, 293577179 edges, 309362 markings/sec, 250 secs
lola: 96049904 markings, 298485660 edges, 304082 markings/sec, 255 secs
lola: 97553941 markings, 303362265 edges, 300807 markings/sec, 260 secs
lola: 99159316 markings, 308385313 edges, 321075 markings/sec, 265 secs
lola: 101191935 markings, 314473565 edges, 406524 markings/sec, 270 secs
lola: 102856549 markings, 319776381 edges, 332923 markings/sec, 275 secs
lola: local time limit reached - aborting
lola:
preliminary result: unknown unknown no unknown unknown unknown unknown unknown unknown yes yes unknown unknown unknown unknown unknown
lola: memory consumption: 7751616 KB
lola: time consumption: 745 seconds
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 6 will run for 282 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (A (F (E ((FIREABLE(TIM_backward) U FIREABLE(Ru5P_epimerase))))) OR A (F (((FIREABLE(TIM_backward) OR FIREABLE(G6P_dehydrogenase) OR FIREABLE(remove)) AND E (X (FIREABLE(Transaldolase)))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: local time limit reached - aborting
lola:
preliminary result: unknown unknown no unknown unknown unknown unknown unknown unknown yes yes unknown unknown unknown unknown unknown
lola: caught signal User defined signal 1 - aborting LoLA
lola: memory consumption: 14460 KB
lola: time consumption: 1028 seconds
lola: time limit reached - aborting
lola:
preliminary result: unknown unknown no unknown unknown unknown unknown unknown unknown yes yes unknown unknown unknown unknown unknown
lola:
preliminary result: unknown unknown no unknown unknown unknown unknown unknown unknown yes yes unknown unknown unknown unknown unknown
lola: memory consumption: 14460 KB
lola: time consumption: 3570 seconds

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000100000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000100000.tgz
mv GPPP-PT-C0100N0000100000 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool lola"
echo " Input is GPPP-PT-C0100N0000100000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r088-blw7-152649998400333"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;