Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
/home/mcc/execution
total 196K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.7K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.8K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 115 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 353 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 17 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 21K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool lola
Input is GPPP-PT-C0001N0000000010, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r088-blw7-152649998300249
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-00
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-01
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-02
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-03
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-04
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-05
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-06
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-07
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-08
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-09
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000010-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1526705346739

info: Time: 3600 - MCC
===========================================================================================
prep: translating GPPP-PT-C0001N0000000010 Petri net model.pnml into LoLA format
===========================================================================================
prep: translating PT Petri net complete
prep: check for too many tokens
===========================================================================================
prep: translating GPPP-PT-C0001N0000000010 formula CTLFireability into LoLA format
===========================================================================================
prep: translating PT formula complete
vrfy: Checking CTLFireability @ GPPP-PT-C0001N0000000010 @ 3570 seconds
lola: LoLA will run for 3570 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: Size of bit vector: 1056
lola: finding significant places
lola: 33 places, 22 transitions, 20 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0001N0000000010-CTLFireability.task
lola: A (F ((FIREABLE(TIM_backward) AND A (F (NOT FIREABLE(Phosphoglycerate_mutase)))))) : A (G ((((NOT FIREABLE(Lactate_dehydrogenase) OR NOT FIREABLE(Aldolase)) OR E (X (FIREABLE(Transketolase2)))) OR NOT FIREABLE(Lactate_dehydrogenase)))) : E (F (NOT(E (F ((FIREABLE(Enolase) OR FIREABLE(Glutathione_oxidation))))))) : A (G (A (X ((NOT FIREABLE(GAP_dehydrogenase) OR NOT FIREABLE(Ru5P_isomerase)))))) : E (F (A (((FIREABLE(TIM_forward) OR FIREABLE(G6P_dehydrogenase)) U FIREABLE(remove))))) : NOT(A (G (E (F ((FIREABLE(Pyruvate_kinase) OR FIREABLE(Transketolase1))))))) : A (G (E ((NOT FIREABLE(remove) U FIREABLE(Transaldolase))))) : E (F (A (G ((FIREABLE(Transketolase2) OR FIREABLE(Ru5P_epimerase) OR (FIREABLE(Transketolase2) AND FIREABLE(remove))))))) : E (F (A (G (NOT FIREABLE(Aldolase))))) : E (F ((NOT FIREABLE(Transketolase1) AND FIREABLE(remove)))) : NOT(E (F (E (G ((FIREABLE(generate) AND FIREABLE(Glutathione_reductose))))))) : E (G ((((FIREABLE(Pyruvate_kinase) AND (FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Lactate_dehydrogenase))) OR E (F (FIREABLE(generate)))) OR FIREABLE(Transketolase1)))) : A (F ((A ((FIREABLE(Transketolase1) U FIREABLE(remove))) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(G6P_dehydrogenase))))) : (NOT(A (F ((FIREABLE(generate) AND FIREABLE(Ru5P_epimerase) AND NOT FIREABLE(TIM_backward))))) AND (E (F ((FIREABLE(TIM_forward) AND FIREABLE(generate)))) AND (FIREABLE(Transketolase2)))) : (A (G (NOT(A (F (FIREABLE(Transketolase2)))))) AND NOT(E (G (NOT FIREABLE(Phosphoglycerate_kinase))))) : A (F (FIREABLE(Hexokinase)))
lola: rewrite Frontend/Parser/formula_rewrite.k:254
lola: rewrite Frontend/Parser/formula_rewrite.k:326
lola: rewrite Frontend/Parser/formula_rewrite.k:332
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:398
lola: rewrite Frontend/Parser/formula_rewrite.k:323
lola: rewrite Frontend/Parser/formula_rewrite.k:329
lola: rewrite Frontend/Parser/formula_rewrite.k:326
lola: rewrite Frontend/Parser/formula_rewrite.k:332
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:326
lola: rewrite Frontend/Parser/formula_rewrite.k:332
lola: rewrite Frontend/Parser/formula_rewrite.k:326
lola: rewrite Frontend/Parser/formula_rewrite.k:329
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:254
lola: rewrite Frontend/Parser/formula_rewrite.k:323
lola: rewrite Frontend/Parser/formula_rewrite.k:332
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:323
lola: rewrite Frontend/Parser/formula_rewrite.k:332
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:458
lola: rewrite Frontend/Parser/formula_rewrite.k:326
lola: rewrite Frontend/Parser/formula_rewrite.k:329
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 223 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Lactate_dehydrogenase) OR NOT FIREABLE(Aldolase)) OR (E (X (FIREABLE(Transketolase2))) OR NOT FIREABLE(Lactate_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:721
lola: rewrite Frontend/Parser/formula_rewrite.k:737
lola: rewrite Frontend/Parser/formula_rewrite.k:318
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:318
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: processed formula: NOT(E(TRUE U ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Aldolase)) AND (NOT(EX(FIREABLE(Transketolase2))) AND FIREABLE(Lactate_dehydrogenase)))))
lola: processed formula length: 149
lola: 32 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: 3502 markings, 13843 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-1 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 1 will run for 238 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (X (A (G ((NOT FIREABLE(GAP_dehydrogenase) OR NOT FIREABLE(Ru5P_isomerase))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance from all successors
lola: rewrite Frontend/Parser/formula_rewrite.k:663
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: (FIREABLE(GAP_dehydrogenase) AND FIREABLE(Ru5P_isomerase))
lola: processed formula length: 58
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space /EXEF)
lola: state space: using reachability graph (EXef version) (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space /EXEF
lola: The predicate is invariant from successors.
lola: 8090 markings, 16828 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-3 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 2 will run for 255 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Transketolase1) AND FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((NOT FIREABLE(Transketolase1) AND FIREABLE(remove))))
lola: processed formula length: 59
lola: 27 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (NOT FIREABLE(Transketolase1) AND FIREABLE(remove))
lola: state equation: Generated DNF with 6 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 67 markings, 66 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 3 will run for 274 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (A (G (NOT FIREABLE(Aldolase)))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: AGEF init
lola: rewrite Frontend/Parser/formula_rewrite.k:636
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: FIREABLE(Aldolase)
lola: processed formula length: 18
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using tscc preserving stubborn set method (--stubborn)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: tscc_search
lola: The predicate is not possibly invariant.
lola: 1147267 markings, 3855512 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-8 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 4 will run for 297 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (F (FIREABLE(Hexokinase)))
lola: ========================================
lola: SUBTASK
lola: checking eventual occurrence
lola: rewrite Frontend/Parser/formula_rewrite.k:659
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: NOT FIREABLE(Hexokinase)
lola: processed formula length: 24
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space / EG)
lola: state space: using search routine for EG formula (--search=depth)
lola: state space: using EG preserving stubborn set method (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space / EG
lola: The predicate eventually occurs.
lola: 1 markings, 0 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-15 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 5 will run for 324 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (A (G ((NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Transketolase1))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: AGEF init
lola: rewrite Frontend/Parser/formula_rewrite.k:636
lola: rewrite Frontend/Parser/formula_rewrite.k:695
lola: processed formula: (FIREABLE(Pyruvate_kinase) OR FIREABLE(Transketolase1))
lola: processed formula length: 56
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using tscc preserving stubborn set method (--stubborn)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: tscc_search
lola: The predicate is not possibly invariant.
lola: 1432970 markings, 5623314 edges

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-5 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: ========================================
lola: subprocess 6 will run for 356 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G (A (F ((NOT FIREABLE(generate) OR NOT FIREABLE(Glutathione_reductose))))))
lola: ========================================
lola: SUBTASK
lola: checking eventual occurrence in all states
lola: rewrite Frontend/Parser/formula_rewrite.k:644
lola: rewrite Frontend/Parser/formula_rewrite.k:695
lola: processed formula: (FIREABLE(generate) AND FIREABLE(Glutathione_reductose))
lola: processed formula length: 56
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space /EFEG)
lola: state space: using reachability graph (EFEG version) (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space /EFEG
lola: The predicate eventually occurs from all states.
lola: 30076 markings, 46867 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-10 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 7 will run for 396 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (A (G ((NOT FIREABLE(Enolase) AND NOT FIREABLE(Glutathione_oxidation))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: AGEF init
lola: rewrite Frontend/Parser/formula_rewrite.k:636
lola: rewrite Frontend/Parser/formula_rewrite.k:695
lola: processed formula: (FIREABLE(Enolase) OR FIREABLE(Glutathione_oxidation))
lola: processed formula length: 55
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using tscc preserving stubborn set method (--stubborn)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: tscc_search
lola: The predicate is not possibly invariant.
lola: 1655346 markings, 9353364 edges

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-2 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: ========================================
lola: subprocess 8 will run for 445 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (A (G ((FIREABLE(Transketolase2) OR FIREABLE(Ru5P_epimerase) OR (FIREABLE(Transketolase2) AND FIREABLE(remove)))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: AGEF init
lola: rewrite Frontend/Parser/formula_rewrite.k:636
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: (NOT FIREABLE(Transketolase2) AND NOT FIREABLE(Ru5P_epimerase) AND (NOT FIREABLE(Transketolase2) OR NOT FIREABLE(remove)))
lola: processed formula length: 123
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH
lola: using tscc preserving stubborn set method (--stubborn)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: tscc_search
lola: The predicate is not possibly invariant.
lola: 1640232 markings, 8760101 edges

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-7 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: ========================================
lola: subprocess 9 will run for 508 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G (E ((NOT FIREABLE(remove) U FIREABLE(Transaldolase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:726
lola: rewrite Frontend/Parser/formula_rewrite.k:737
lola: processed formula: NOT(E(TRUE U NOT(E(NOT FIREABLE(remove) U FIREABLE(Transaldolase)))))
lola: processed formula length: 69
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: 6218 markings, 25188 edges

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-6 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 10 will run for 592 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ========================================
lola: ...considering subproblem: A (F ((FIREABLE(TIM_backward) AND A (F (NOT FIREABLE(Phosphoglycerate_mutase))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:732
lola: rewrite Frontend/Parser/formula_rewrite.k:732
lola: processed formula: A(TRUE U (FIREABLE(TIM_backward) AND A(TRUE U NOT FIREABLE(Phosphoglycerate_mutase))))
lola: processed formula length: 86
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: 904 markings, 2339 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 11 will run for 711 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (A (((FIREABLE(TIM_forward) OR FIREABLE(G6P_dehydrogenase)) U FIREABLE(remove)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:739
lola: rewrite Frontend/Parser/formula_rewrite.k:719
lola: processed formula: E(TRUE U A((FIREABLE(TIM_forward) OR FIREABLE(G6P_dehydrogenase)) U FIREABLE(remove)))
lola: processed formula length: 87
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: 133 markings, 382 edges
lola:
FORMULA GPPP-PT-C0001N0000000010-CTLFireability-4 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
========================================
lola: subprocess 12 will run for 889 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (F ((A ((FIREABLE(Transketolase1) U FIREABLE(remove))) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(G6P_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:739
lola: rewrite Frontend/Parser/formula_rewrite.k:732
lola: processed formula: A(TRUE U (A(FIREABLE(Transketolase1) U FIREABLE(remove)) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_mutase) OR FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(G6P_dehydrogenase))))
lola: processed formula length: 190
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: 10 markings, 20 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 13 will run for 1185 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (G (((FIREABLE(Pyruvate_kinase) AND (FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Lactate_dehydrogenase))) OR (E (F (FIREABLE(generate))) OR FIREABLE(Transketolase1)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: rewrite Frontend/Parser/formula_rewrite.k:719
lola: rewrite Frontend/Parser/formula_rewrite.k:724
lola: rewrite Frontend/Parser/formula_rewrite.k:318
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: rewrite Frontend/Parser/formula_rewrite.k:318
lola: rewrite Frontend/Parser/formula_rewrite.k:297
lola: processed formula: NOT(A(TRUE U ((NOT FIREABLE(Pyruvate_kinase) OR (NOT FIREABLE(Phosphoglycerate_kinase) AND NOT FIREABLE(Lactate_dehydrogenase))) AND (NOT(E(TRUE U FIREABLE(generate))) AND NOT FIREABLE(Transketolase1)))))
lola: processed formula length: 205
lola: 32 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: 133 markings, 187 edges
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-11 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 14 will run for 1778 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (A (G (NOT FIREABLE(Transketolase2))) AND A (F (FIREABLE(Phosphoglycerate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 14 will run for 1778 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (F (FIREABLE(Phosphoglycerate_kinase)))
lola: ========================================
lola: SUBTASK
lola: checking eventual occurrence
lola: rewrite Frontend/Parser/formula_rewrite.k:659
lola: rewrite Frontend/Parser/formula_rewrite.k:695
lola: processed formula: NOT FIREABLE(Phosphoglycerate_kinase)
lola: processed formula length: 37
lola: 28 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space / EG)
lola: state space: using search routine for EG formula (--search=depth)
lola: state space: using EG preserving stubborn set method (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: state space / EG
lola: The predicate does not eventually occur.
lola: 37 markings, 37 edges
lola: ========================================
lola: SUBRESULT
lola: result: no
lola: The Boolean predicate is false.
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-14 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 15 will run for 3557 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (E (G ((NOT FIREABLE(generate) OR NOT FIREABLE(Ru5P_epimerase) OR FIREABLE(TIM_backward)))) AND (E (F ((FIREABLE(TIM_forward) AND FIREABLE(generate)))) AND (FIREABLE(Transketolase2))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 15 will run for 3557 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: (FIREABLE(Transketolase2))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: (FIREABLE(Transketolase2))
lola: processed formula length: 26
lola: 26 rewrites
lola: closed formula file GPPP-PT-C0001N0000000010-CTLFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: preprocessing
lola: The net violates the given property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================
lola: SUBRESULT
lola: result: no
lola: The Boolean predicate is false.
lola: ========================================

FORMULA GPPP-PT-C0001N0000000010-CTLFireability-13 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: RESULT
lola:
SUMMARY: yes no no yes yes no no no no yes yes yes no no no yes
lola:
preliminary result: yes no no yes yes no no no no yes yes yes no no no yes
lola: memory consumption: 14568 KB
lola: time consumption: 13 seconds

BK_STOP 1526705359640

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000010"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000010.tgz
mv GPPP-PT-C0001N0000000010 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool lola"
echo " Input is GPPP-PT-C0001N0000000010, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r088-blw7-152649998300249"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;