Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..................
/home/mcc/execution
total 2.2M
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.6K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 105 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 343 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.6K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 7 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 2.0M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Echo-PT-d03r07, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948800468
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Echo-PT-d03r07-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1527388379786

Flatten gal took : 939 ms
Constant places removed 344 places and 1 transitions.
Iterating post reduction 0 with 344 rules applied. Total rules applied 344 place count 3865 transition count 3517
Applied a total of 344 rules in 586 ms. Remains 3865 /4209 variables (removed 344) and now considering 3517/3518 (removed 1) transitions.
// Phase 1: matrix 3517 rows 3865 cols
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph1557740694158159648.txt, -o, /tmp/graph1557740694158159648.bin, -w, /tmp/graph1557740694158159648.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph1557740694158159648.bin, -l, -1, -v, -w, /tmp/graph1557740694158159648.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
built 82 ordering constraints for composite.
built 349 ordering constraints for composite.
built 387 ordering constraints for composite.
built 419 ordering constraints for composite.
built 372 ordering constraints for composite.
built 448 ordering constraints for composite.
built 546 ordering constraints for composite.
built 399 ordering constraints for composite.
built 329 ordering constraints for composite.
built 422 ordering constraints for composite.
built 482 ordering constraints for composite.
built 413 ordering constraints for composite.
built 321 ordering constraints for composite.
Compilation finished in 57330 ms.
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Link finished in 85 ms.
Running LTSmin : CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-mc, ./gal.so, --threads=1, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
sparsehash FATAL ERROR: failed to allocate 41 groups

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 27, 2018 2:33:01 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityDeadlock, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 27, 2018 2:33:01 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 27, 2018 2:33:01 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 300 ms
May 27, 2018 2:33:01 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 4209 places.
May 27, 2018 2:33:02 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 3518 transitions.
May 27, 2018 2:33:02 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 935 ms
May 27, 2018 2:33:03 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.simple.gal : 79 ms
May 27, 2018 2:33:03 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 3518 transitions.
May 27, 2018 2:33:06 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 27, 2018 2:33:07 AM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 3517 transitions.
May 27, 2018 2:33:07 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Too many transitions (3517) to apply POR reductions. Disabling POR matrices.
May 27, 2018 2:33:07 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 668 ms
May 27, 2018 2:33:07 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 902ms conformant to PINS in folder :/home/mcc/execution
May 27, 2018 2:33:08 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 504 ms
Begin: Sun May 27 02:33:08 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sun May 27 02:33:08 2018
network size: 3865 nodes, 29040 links, 7032 weight
quality increased from -0.000395864 to 0.498812
end computation: Sun May 27 02:33:08 2018
level 1:
start computation: Sun May 27 02:33:08 2018
network size: 327 nodes, 4508 links, 7032 weight
quality increased from 0.498812 to 0.727541
end computation: Sun May 27 02:33:08 2018
level 2:
start computation: Sun May 27 02:33:08 2018
network size: 26 nodes, 235 links, 7032 weight
quality increased from 0.727541 to 0.748985
end computation: Sun May 27 02:33:08 2018
level 3:
start computation: Sun May 27 02:33:08 2018
network size: 13 nodes, 88 links, 7032 weight
quality increased from 0.748985 to 0.748985
end computation: Sun May 27 02:33:08 2018
End: Sun May 27 02:33:08 2018
Total duration: 0 sec
0.748985
May 27, 2018 2:33:08 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 27, 2018 2:33:09 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 422 ms
May 27, 2018 2:33:09 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 27, 2018 2:33:11 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 6462 redundant transitions.
May 27, 2018 2:33:11 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 56 ms
ITS-tools command line returned an error code 1

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Echo-PT-d03r07"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Echo-PT-d03r07.tgz
mv Echo-PT-d03r07 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Echo-PT-d03r07, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948800468"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;