Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.2K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.4K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 7.3M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D50N150, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948500310
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-00
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-01
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-02
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-03
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-04
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-05
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-06
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-07
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-08
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-09
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-10
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-11
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-12
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-13
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-14
FORMULA_NAME Diffusion2D-PT-D50N150-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527329996996

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph2286823321294491933.txt, -o, /tmp/graph2286823321294491933.bin, -w, /tmp/graph2286823321294491933.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph2286823321294491933.bin, -l, -1, -v, -w, /tmp/graph2286823321294491933.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-00 with value :i14.u255.cAMP__42_9_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-01 with value :i9.u134.cAMP__26_37_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-02 with value :i8.u217.cAMP__37_46_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-03 with value :i11.u206.cAMP__37_29_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-04 with value :i14.u281.cAMP__46_20_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-05 with value :i6.u148.cAMP__29_46_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-06 with value :i9.u171.cAMP__32_35_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-07 with value :i3.u312.cAMP__8_23_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-08 with value :i5.u117.cAMP__24_40_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-09 with value :i9.u185.cAMP__33_41_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-10 with value :i2.u90.cAMP__21_11_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-11 with value :i7.u108.cAMP__21_25_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-12 with value :i8.u287.cAMP__47_47_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-13 with value :i8.u217.cAMP__38_45_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-14 with value :i2.u48.cAMP__15_16_
Read [bounds] property : Diffusion2D-PT-D50N150-UpperBounds-15 with value :i11.u229.cAMP__39_32_
built 54 ordering constraints for composite.
built 686 ordering constraints for composite.
built 586 ordering constraints for composite.
built 504 ordering constraints for composite.
built 734 ordering constraints for composite.
built 568 ordering constraints for composite.
built 842 ordering constraints for composite.
built 416 ordering constraints for composite.
built 578 ordering constraints for composite.
built 544 ordering constraints for composite.
built 844 ordering constraints for composite.
built 478 ordering constraints for composite.
built 878 ordering constraints for composite.
built 878 ordering constraints for composite.
built 684 ordering constraints for composite.
built 546 ordering constraints for composite.
built 724 ordering constraints for composite.
built 436 ordering constraints for composite.
*
Cache Stats : size=5474969 --- Peak size=0
Cache hit ratio : 0% (0/0)
*
GSHom Stats : size unicity table = 47282
sizeof(_GShom):16
sizeof(SIdentity):16
Current/Peak number of SDD nodes in unicity table :2376409/2376409
sizeof(_GSDD):48
*
Cache Stats : size=73689933

Cache hit ratio : 0%
*
GHom Stats : size unicity table = 5128
sizeof(_GHom):24
sizeof(Identity):24
Peak number of DDD nodes in unicity table :16777214
sizeof(_GDDD):8
sizeof(DDD::edge_t):8
sizeof(DDD::val_t):2

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 10:19:58 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 10:19:58 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 10:19:59 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 514 ms
May 26, 2018 10:19:59 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2500 places.
May 26, 2018 10:19:59 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 19404 transitions.
May 26, 2018 10:19:59 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 10:20:00 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1383 ms
May 26, 2018 10:20:01 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 828 ms
Begin: Sat May 26 10:20:03 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 10:20:03 2018
network size: 2500 nodes, 19404 links, 38808 weight
quality increased from -0.000404478 to 0.53715
end computation: Sat May 26 10:20:03 2018
level 1:
start computation: Sat May 26 10:20:03 2018
network size: 334 nodes, 2247 links, 38808 weight
quality increased from 0.53715 to 0.794374
end computation: Sat May 26 10:20:03 2018
level 2:
start computation: Sat May 26 10:20:03 2018
network size: 49 nodes, 293 links, 38808 weight
quality increased from 0.794374 to 0.829495
end computation: Sat May 26 10:20:03 2018
level 3:
start computation: Sat May 26 10:20:03 2018
network size: 17 nodes, 91 links, 38808 weight
quality increased from 0.829495 to 0.833308
end computation: Sat May 26 10:20:03 2018
End: Sat May 26 10:20:03 2018
Total duration: 0 sec
0.833308
May 26, 2018 10:20:03 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 10:20:04 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1011 ms
May 26, 2018 10:20:04 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 10:20:09 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 13090 redundant transitions.
May 26, 2018 10:20:09 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 126 ms
May 26, 2018 10:20:09 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N150"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N150.tgz
mv Diffusion2D-PT-D50N150 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D50N150, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948500310"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;