Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............................
/home/mcc/execution
total 7.5M
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.8K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 7.3M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D50N100, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948500303
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-00
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-01
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-02
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-03
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-04
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-05
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-06
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-07
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-08
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-09
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-10
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-11
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-12
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-13
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-14
FORMULA_NAME Diffusion2D-PT-D50N100-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527324185655

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph7544180132495506779.txt, -o, /tmp/graph7544180132495506779.bin, -w, /tmp/graph7544180132495506779.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph7544180132495506779.bin, -l, -1, -v, -w, /tmp/graph7544180132495506779.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-00 with value :i5.u90.cAMP__20_5_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-01 with value :i8.u131.cAMP__26_37_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-02 with value :i1.u297.cAMP__3_47_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-03 with value :i16.u159.cAMP__5_20_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-04 with value :i12.u273.cAMP__45_5_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-05 with value :i13.u16.cAMP__12_4_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-06 with value :i8.u122.cAMP__26_27_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-07 with value :i2.u10.cAMP__12_37_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-08 with value :i0.u14.cAMP__15_24_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-09 with value :i15.u266.cAMP__44_36_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-10 with value :i3.u87.cAMP__20_28_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-11 with value :i8.u186.cAMP__34_28_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-12 with value :i12.u275.cAMP__47_14_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-13 with value :i6.u154.cAMP__31_23_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-14 with value :i12.u291.cAMP__47_7_
Read [bounds] property : Diffusion2D-PT-D50N100-UpperBounds-15 with value :i12.u219.cAMP__41_14_
built 54 ordering constraints for composite.
built 484 ordering constraints for composite.
built 856 ordering constraints for composite.
built 376 ordering constraints for composite.
built 622 ordering constraints for composite.
built 806 ordering constraints for composite.
built 768 ordering constraints for composite.
built 458 ordering constraints for composite.
built 758 ordering constraints for composite.
built 942 ordering constraints for composite.
built 570 ordering constraints for composite.
built 644 ordering constraints for composite.
built 728 ordering constraints for composite.
built 526 ordering constraints for composite.
built 436 ordering constraints for composite.
built 886 ordering constraints for composite.
built 706 ordering constraints for composite.
built 394 ordering constraints for composite.

BK_STOP 1527327328318

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 8:43:07 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 8:43:07 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 8:43:08 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 713 ms
May 26, 2018 8:43:08 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 2500 places.
May 26, 2018 8:43:09 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 19404 transitions.
May 26, 2018 8:43:09 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 8:43:10 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1557 ms
May 26, 2018 8:43:12 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 1329 ms
Begin: Sat May 26 08:43:14 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 08:43:14 2018
network size: 2500 nodes, 19404 links, 38808 weight
quality increased from -0.000404478 to 0.533209
end computation: Sat May 26 08:43:14 2018
level 1:
start computation: Sat May 26 08:43:14 2018
network size: 341 nodes, 2319 links, 38808 weight
quality increased from 0.533209 to 0.806422
end computation: Sat May 26 08:43:14 2018
level 2:
start computation: Sat May 26 08:43:14 2018
network size: 43 nodes, 253 links, 38808 weight
quality increased from 0.806422 to 0.833589
end computation: Sat May 26 08:43:14 2018
level 3:
start computation: Sat May 26 08:43:14 2018
network size: 18 nodes, 98 links, 38808 weight
quality increased from 0.833589 to 0.83442
end computation: Sat May 26 08:43:14 2018
level 4:
start computation: Sat May 26 08:43:14 2018
network size: 17 nodes, 91 links, 38808 weight
quality increased from 0.83442 to 0.83442
end computation: Sat May 26 08:43:14 2018
End: Sat May 26 08:43:14 2018
Total duration: 0 sec
0.83442
May 26, 2018 8:43:14 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 8:43:15 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 786 ms
May 26, 2018 8:43:15 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 8:43:20 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 13242 redundant transitions.
May 26, 2018 8:43:21 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 191 ms
May 26, 2018 8:43:21 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D50N100"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D50N100.tgz
mv Diffusion2D-PT-D50N100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D50N100, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948500303"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;