Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
/home/mcc/execution
total 4.8M
-rw-r--r-- 1 mcc users 4.4K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.2K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.1K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.5K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 4.7M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D40N050, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948500268
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-00
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-01
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-02
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-03
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-04
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-05
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-06
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-07
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-08
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-09
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-10
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-11
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-12
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-13
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-14
FORMULA_NAME Diffusion2D-PT-D40N050-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527305534138

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph7800141034171280955.txt, -o, /tmp/graph7800141034171280955.bin, -w, /tmp/graph7800141034171280955.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph7800141034171280955.bin, -l, -1, -v, -w, /tmp/graph7800141034171280955.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-00 with value :i11.u155.cAMP__33_33_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-01 with value :i11.u177.cAMP__40_30_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-02 with value :i15.u209.cAMP__6_7_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-03 with value :i15.u211.cAMP__6_2_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-04 with value :i9.u171.cAMP__38_6_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-05 with value :i3.u45.cAMP__20_15_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-06 with value :i14.u67.cAMP__3_30_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-07 with value :i5.u114.cAMP__27_36_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-08 with value :i0.u2.cAMP__9_18_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-09 with value :i8.u80.cAMP__22_16_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-10 with value :i9.u200.cAMP__39_7_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-11 with value :i11.u163.cAMP__35_32_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-12 with value :i12.u196.cAMP__38_35_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-13 with value :i12.u179.cAMP__38_37_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-14 with value :i8.u101.cAMP__25_15_
Read [bounds] property : Diffusion2D-PT-D40N050-UpperBounds-15 with value :i10.u130.cAMP__32_14_
built 51 ordering constraints for composite.
built 318 ordering constraints for composite.
built 422 ordering constraints for composite.
built 462 ordering constraints for composite.
built 250 ordering constraints for composite.
built 626 ordering constraints for composite.
built 436 ordering constraints for composite.
built 566 ordering constraints for composite.
built 460 ordering constraints for composite.
built 554 ordering constraints for composite.
built 212 ordering constraints for composite.
built 466 ordering constraints for composite.
built 680 ordering constraints for composite.
built 594 ordering constraints for composite.
built 580 ordering constraints for composite.
built 390 ordering constraints for composite.
built 174 ordering constraints for composite.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 3:32:15 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 3:32:15 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 3:32:16 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 341 ms
May 26, 2018 3:32:16 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 1600 places.
May 26, 2018 3:32:16 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 12324 transitions.
May 26, 2018 3:32:16 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 3:32:17 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 988 ms
May 26, 2018 3:32:18 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 577 ms
Begin: Sat May 26 03:32:18 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 03:32:18 2018
network size: 1600 nodes, 12324 links, 24648 weight
quality increased from -0.000633733 to 0.530309
end computation: Sat May 26 03:32:18 2018
level 1:
start computation: Sat May 26 03:32:18 2018
network size: 223 nodes, 1491 links, 24648 weight
quality increased from 0.530309 to 0.777266
end computation: Sat May 26 03:32:18 2018
level 2:
start computation: Sat May 26 03:32:18 2018
network size: 36 nodes, 214 links, 24648 weight
quality increased from 0.777266 to 0.810223
end computation: Sat May 26 03:32:18 2018
level 3:
start computation: Sat May 26 03:32:18 2018
network size: 16 nodes, 86 links, 24648 weight
quality increased from 0.810223 to 0.810223
end computation: Sat May 26 03:32:18 2018
End: Sat May 26 03:32:18 2018
Total duration: 0 sec
0.810223
May 26, 2018 3:32:18 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 3:32:19 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 500 ms
May 26, 2018 3:32:19 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 3:32:22 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 8438 redundant transitions.
May 26, 2018 3:32:23 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 88 ms
May 26, 2018 3:32:23 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D40N050"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D40N050.tgz
mv Diffusion2D-PT-D40N050 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D40N050, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948500268"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;