Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
/home/mcc/execution
total 3.2M
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 3.0M May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D30N100, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948500247
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-00
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-01
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-02
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-03
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-04
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-05
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-06
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-07
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-08
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-09
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-10
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-11
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-12
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-13
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-14
FORMULA_NAME Diffusion2D-PT-D30N100-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527294087917

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph4476311218752466980.txt, -o, /tmp/graph4476311218752466980.bin, -w, /tmp/graph4476311218752466980.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph4476311218752466980.bin, -l, -1, -v, -w, /tmp/graph4476311218752466980.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-00 with value :i7.u94.cAMP__2_28_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-01 with value :i4.u25.cAMP__15_1_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-02 with value :i7.u116.cAMP__6_28_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-03 with value :i3.u30.cAMP__16_14_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-04 with value :i9.u122.cAMP__7_12_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-05 with value :i2.u69.cAMP__25_5_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-06 with value :i0.u63.cAMP__22_6_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-07 with value :i2.u85.cAMP__27_11_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-08 with value :i0.u66.cAMP__23_13_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-09 with value :i10.u12.cAMP__11_21_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-10 with value :i1.u33.cAMP__16_24_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-11 with value :i10.u123.cAMP__7_20_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-12 with value :i2.u84.cAMP__27_5_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-13 with value :i7.u8.cAMP__10_27_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-14 with value :i6.u105.cAMP__30_29_
Read [bounds] property : Diffusion2D-PT-D30N100-UpperBounds-15 with value :i2.u104.cAMP__28_3_
built 34 ordering constraints for composite.
built 280 ordering constraints for composite.
built 306 ordering constraints for composite.
built 516 ordering constraints for composite.
built 332 ordering constraints for composite.
built 498 ordering constraints for composite.
built 336 ordering constraints for composite.
built 318 ordering constraints for composite.
built 400 ordering constraints for composite.
built 314 ordering constraints for composite.
built 430 ordering constraints for composite.
built 302 ordering constraints for composite.

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 26, 2018 12:21:29 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 26, 2018 12:21:29 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 26, 2018 12:21:29 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 304 ms
May 26, 2018 12:21:29 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 900 places.
May 26, 2018 12:21:30 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 6844 transitions.
May 26, 2018 12:21:30 AM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 26, 2018 12:21:30 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 740 ms
May 26, 2018 12:21:31 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 336 ms
Begin: Sat May 26 00:21:31 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Sat May 26 00:21:31 2018
network size: 900 nodes, 6844 links, 13688 weight
quality increased from -0.00113176 to 0.527338
end computation: Sat May 26 00:21:31 2018
level 1:
start computation: Sat May 26 00:21:31 2018
network size: 129 nodes, 839 links, 13688 weight
quality increased from 0.527338 to 0.755
end computation: Sat May 26 00:21:31 2018
level 2:
start computation: Sat May 26 00:21:31 2018
network size: 24 nodes, 132 links, 13688 weight
quality increased from 0.755 to 0.779643
end computation: Sat May 26 00:21:31 2018
level 3:
start computation: Sat May 26 00:21:31 2018
network size: 11 nodes, 57 links, 13688 weight
quality increased from 0.779643 to 0.779643
end computation: Sat May 26 00:21:31 2018
End: Sat May 26 00:21:31 2018
Total duration: 0 sec
0.779643
May 26, 2018 12:21:31 AM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 26, 2018 12:21:32 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 348 ms
May 26, 2018 12:21:32 AM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 26, 2018 12:21:34 AM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 4652 redundant transitions.
May 26, 2018 12:21:34 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 82 ms
May 26, 2018 12:21:34 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D30N100"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D30N100.tgz
mv Diffusion2D-PT-D30N100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D30N100, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948500247"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;