Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................................
/home/mcc/execution
total 428K
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.9K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 10K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 255K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D10N100, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948400184
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-00
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-01
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-02
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-03
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-04
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-05
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-06
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-07
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-08
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-09
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-10
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-11
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-12
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-13
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-14
FORMULA_NAME Diffusion2D-PT-D10N100-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527264297048

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph9122474956174330277.txt, -o, /tmp/graph9122474956174330277.bin, -w, /tmp/graph9122474956174330277.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph9122474956174330277.bin, -l, -1, -v, -w, /tmp/graph9122474956174330277.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-00 with value :i1.u2.cAMP__9_5_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-01 with value :i2.u10.cAMP__5_8_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-02 with value :i4.u9.cAMP__5_6_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-03 with value :i0.u13.cAMP__8_7_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-04 with value :i0.u0.cAMP__9_10_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-05 with value :i2.u10.cAMP__6_8_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-06 with value :i3.u5.cAMP__2_1_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-07 with value :i1.u11.cAMP__5_2_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-08 with value :i4.u9.cAMP__3_4_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-09 with value :i0.u14.cAMP__7_9_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-10 with value :i4.u9.cAMP__1_5_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-11 with value :i4.u9.cAMP__3_4_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-12 with value :i4.u9.cAMP__1_4_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-13 with value :i3.u7.cAMP__4_2_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-14 with value :i1.u12.cAMP__8_4_
Read [bounds] property : Diffusion2D-PT-D10N100-UpperBounds-15 with value :i1.u11.cAMP__5_1_
built 12 ordering constraints for composite.
built 98 ordering constraints for composite.
built 114 ordering constraints for composite.
built 78 ordering constraints for composite.
built 46 ordering constraints for composite.
built 102 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Diffusion2D\_PT\_D10N100\_flat\_flat\_flat\_mod,4.52743e+58,2528.76,12334580,2527,1617,643222,2.11727e+07,583,1.89528e+06,179,4.8634e+07,0
Total reachable state count : 4.527425732805164057707389919256713979166e+58

Verifying 16 reachability properties.
Min sum of variable value : 0
Maximum sum along a path : 100
Bounds property Diffusion2D-PT-D10N100-UpperBounds-00 :0 <= i1.u2.cAMP__9_5_ <= 100
FORMULA Diffusion2D-PT-D10N100-UpperBounds-00 100 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Diffusion2D-PT-D10N100-UpperBounds-00,0,2644.92,12334808,1,0,672693,2.11727e+07,680,1.89528e+06,301,4.8634e+07,4052
Min sum of variable value : 0
Maximum sum along a path : 100
Bounds property Diffusion2D-PT-D10N100-UpperBounds-01 :0 <= i2.u10.cAMP__5_8_ <= 100
FORMULA Diffusion2D-PT-D10N100-UpperBounds-01 100 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN


BK_STOP 1527267510880

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 4:04:58 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 4:04:58 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 4:04:59 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 95 ms
May 25, 2018 4:04:59 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 100 places.
May 25, 2018 4:04:59 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 684 transitions.
May 25, 2018 4:04:59 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 22 ms
May 25, 2018 4:04:59 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 4:04:59 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 133 ms
May 25, 2018 4:04:59 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 83 ms
Begin: Fri May 25 16:04:59 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 16:04:59 2018
network size: 100 nodes, 684 links, 1368 weight
quality increased from -0.0105417 to 0.482627
end computation: Fri May 25 16:04:59 2018
level 1:
start computation: Fri May 25 16:04:59 2018
network size: 16 nodes, 86 links, 1368 weight
quality increased from 0.482627 to 0.572313
end computation: Fri May 25 16:04:59 2018
level 2:
start computation: Fri May 25 16:04:59 2018
network size: 6 nodes, 24 links, 1368 weight
quality increased from 0.572313 to 0.57861
end computation: Fri May 25 16:04:59 2018
level 3:
start computation: Fri May 25 16:04:59 2018
network size: 5 nodes, 19 links, 1368 weight
quality increased from 0.57861 to 0.57861
end computation: Fri May 25 16:04:59 2018
End: Fri May 25 16:04:59 2018
Total duration: 0 sec
0.57861
May 25, 2018 4:04:59 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 4:04:59 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 64 ms
May 25, 2018 4:04:59 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 4:05:00 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 420 redundant transitions.
May 25, 2018 4:05:00 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 10 ms
May 25, 2018 4:05:00 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 1 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D10N100"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D10N100.tgz
mv Diffusion2D-PT-D10N100 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D10N100, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948400184"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;