Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
................
/home/mcc/execution
total 228K
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.8K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.2K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.6K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 22K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 55K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D05N350, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948300163
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-00
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-01
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-02
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-03
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-04
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-05
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-06
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-07
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-08
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-09
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-10
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-11
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-12
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-13
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-14
FORMULA_NAME Diffusion2D-PT-D05N350-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1527258936864

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph7222253394008233357.txt, -o, /tmp/graph7222253394008233357.bin, -w, /tmp/graph7222253394008233357.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph7222253394008233357.bin, -l, -1, -v, -w, /tmp/graph7222253394008233357.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-00 with value :u1.cAMP__3_5_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-01 with value :u3.cAMP__5_1_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-02 with value :u3.cAMP__4_3_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-03 with value :u1.cAMP__2_5_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-04 with value :u1.cAMP__1_4_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-05 with value :u0.cAMP__2_2_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-06 with value :u3.cAMP__4_1_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-07 with value :u1.cAMP__2_5_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-08 with value :u0.cAMP__1_2_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-09 with value :u0.cAMP__1_3_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-10 with value :u1.cAMP__2_5_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-11 with value :u0.cAMP__1_2_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-12 with value :u2.cAMP__5_4_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-13 with value :u0.cAMP__1_1_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-14 with value :u2.cAMP__4_4_
Read [bounds] property : Diffusion2D-PT-D05N350-UpperBounds-15 with value :u3.cAMP__4_3_
built 6 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Diffusion2D\_PT\_D05N350\_flat\_flat\_flat\_mod,4.25388e+37,156.511,629656,2108,3160,334931,1.90502e+06,118,985251,89,4.01648e+06,0
Total reachable state count : 42538836580623522046946100457762717696

Verifying 16 reachability properties.
Min sum of variable value : 0
Maximum sum along a path : 350
Bounds property Diffusion2D-PT-D05N350-UpperBounds-00 :0 <= u1.cAMP__3_5_ <= 350
FORMULA Diffusion2D-PT-D05N350-UpperBounds-00 350 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN


BK_STOP 1527260622882

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution UpperBounds -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination UpperBounds -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 2:35:38 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, UpperBounds, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 2:35:38 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 2:35:38 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 49 ms
May 25, 2018 2:35:38 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 25 places.
May 25, 2018 2:35:38 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 144 transitions.
May 25, 2018 2:35:38 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 9 ms
May 25, 2018 2:35:38 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 2:35:38 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 63 ms
May 25, 2018 2:35:38 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 26 ms
Begin: Fri May 25 14:35:38 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 14:35:38 2018
network size: 25 nodes, 144 links, 288 weight
quality increased from -0.0439815 to 0.388021
end computation: Fri May 25 14:35:38 2018
level 1:
start computation: Fri May 25 14:35:38 2018
network size: 4 nodes, 16 links, 288 weight
quality increased from 0.388021 to 0.388021
end computation: Fri May 25 14:35:38 2018
End: Fri May 25 14:35:38 2018
Total duration: 0 sec
0.388021
May 25, 2018 2:35:38 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 2:35:38 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 19 ms
May 25, 2018 2:35:38 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 2:35:38 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 64 redundant transitions.
May 25, 2018 2:35:38 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/UpperBounds.pnml.gal : 2 ms
May 25, 2018 2:35:38 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/UpperBounds.prop : 0 ms
ITS-tools command line returned an error code 137

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D05N350"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D05N350.tgz
mv Diffusion2D-PT-D05N350 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D05N350, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948300163"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;