Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
/home/mcc/execution
total 224K
-rw-r--r-- 1 mcc users 3.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 3.0K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 10K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 6.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.3K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 18K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 55K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D05N200, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948300144
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-00
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-01
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-02
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-03
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-04
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-05
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-06
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-07
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-08
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-09
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-10
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-11
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-12
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-13
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-14
FORMULA_NAME Diffusion2D-PT-D05N200-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527252623360

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph3420353983488877890.txt, -o, /tmp/graph3420353983488877890.bin, -w, /tmp/graph3420353983488877890.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph3420353983488877890.bin, -l, -1, -v, -w, /tmp/graph3420353983488877890.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 6 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.14386e+32,17.9725,193844,1208,1810,115909,637973,118,248334,89,1.122e+06,0


Converting to forward existential form...Done !
original formula: EF(AG((u1.cAMP__2_4_>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !((u1.cAMP__2_4_>=1)))))] != FALSE
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 0,0,736.844,13301296,1,0,302345,1.43974e+07,376,1.25388e+06,2049,3.29808e+07,28130
FORMULA Diffusion2D-PT-D05N200-CTLFireability-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !

***************************************

original formula: E(EF(((u0.cAMP__1_3_>=1)||(u1.cAMP__3_5_>=1))) U EG(((u0.cAMP__2_2_>=1)&&(u0.cAMP__1_1_>=1))))
=> equivalent forward existential formula: [FwdG(FwdU(Init,E(TRUE U ((u0.cAMP__1_3_>=1)||(u1.cAMP__3_5_>=1)))),((u0.cAMP__2_2_>=1)&&(u0.cAMP__1_1_>=1)))] != FALSE
Fast SCC detection found an SCC at level 1
Fast SCC detection found an SCC at level 2
Fast SCC detection found an SCC at level 3
(forward)formula 1,1,1338.09,13701516,1,0,519984,1.505e+07,667,1.63316e+06,2183,3.49998e+07,100444
FORMULA Diffusion2D-PT-D05N200-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

BK_STOP 1527254077075

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 12:50:24 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 12:50:24 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 12:50:25 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 50 ms
May 25, 2018 12:50:25 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 25 places.
May 25, 2018 12:50:25 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 144 transitions.
May 25, 2018 12:50:25 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 10 ms
May 25, 2018 12:50:25 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 12:50:25 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 59 ms
May 25, 2018 12:50:25 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 27 ms
Begin: Fri May 25 12:50:25 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 12:50:25 2018
network size: 25 nodes, 144 links, 288 weight
quality increased from -0.0439815 to 0.388021
end computation: Fri May 25 12:50:25 2018
level 1:
start computation: Fri May 25 12:50:25 2018
network size: 4 nodes, 16 links, 288 weight
quality increased from 0.388021 to 0.388021
end computation: Fri May 25 12:50:25 2018
End: Fri May 25 12:50:25 2018
Total duration: 0 sec
0.388021
May 25, 2018 12:50:25 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 12:50:25 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 41 ms
May 25, 2018 12:50:25 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 12:50:25 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 64 redundant transitions.
May 25, 2018 12:50:25 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 3 ms
May 25, 2018 12:50:25 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 1 ms
ITS-tools command line returned an error code 134

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D05N200"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D05N200.tgz
mv Diffusion2D-PT-D05N200 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D05N200, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948300144"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;