Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................
/home/mcc/execution
total 228K
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.8K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:50 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 5.8K May 15 18:50 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.3K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.3K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 113 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 351 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 3.9K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:50 equiv_col
-rw-r--r-- 1 mcc users 8 May 15 18:50 instance
-rw-r--r-- 1 mcc users 6 May 15 18:50 iscolored
-rw-r--r-- 1 mcc users 55K May 15 18:50 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Diffusion2D-PT-D05N150, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r081-blw3-152649948300137
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-00
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-01
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-02
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-03
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-04
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-05
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-06
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-07
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-08
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-09
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-10
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-11
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-12
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-13
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-14
FORMULA_NAME Diffusion2D-PT-D05N150-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1527250202986

Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph6963011957813230118.txt, -o, /tmp/graph6963011957813230118.bin, -w, /tmp/graph6963011957813230118.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph6963011957813230118.bin, -l, -1, -v, -w, /tmp/graph6963011957813230118.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLFireability.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLFireability.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLFireability.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLFireability.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
built 6 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,1.8126e+29,7.38472,112572,908,1360,68136,365973,118,143533,89,641197,0


Converting to forward existential form...Done !
original formula: (AG(EF(!((u2.cAMP__5_2_>=1)))) + ((u2.cAMP__4_1_>=1) * (!(EX((u0.cAMP__2_2_>=1))) + AX(((u1.cAMP__2_4_>=1)||(u1.cAMP__3_4_>=1))))))
=> equivalent forward existential formula: ([((Init * !(!(E(TRUE U !(E(TRUE U !((u2.cAMP__5_2_>=1)))))))) * !((u2.cAMP__4_1_>=1)))] = FALSE * [(EY(((Init * !(!(E(TRUE U !(E(TRUE U !((u2.cAMP__5_2_>=1)))))))) * !(!(EX((u0.cAMP__2_2_>=1)))))) * !(((u1.cAMP__2_4_>=1)||(u1.cAMP__3_4_>=1))))] = FALSE)
Reverse transition relation is exact ! Faster fixpoint algorithm enabled.
(forward)formula 0,1,305.962,5544864,1,0,313519,7.39988e+06,383,856322,1602,1.74097e+07,21736
FORMULA Diffusion2D-PT-D05N150-CTLFireability-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EF(AX((u3.cAMP__5_5_>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(EX(!((u3.cAMP__5_5_>=1)))))] != FALSE
(forward)formula 1,1,325.861,5544864,1,0,313519,7.39988e+06,393,856322,1611,1.74097e+07,28548
FORMULA Diffusion2D-PT-D05N150-CTLFireability-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

***************************************

original formula: EF(AG((u1.cAMP__3_4_>=1)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E(TRUE U !((u1.cAMP__3_4_>=1)))))] != FALSE
(forward)formula 2,0,330.422,5544864,1,0,313519,7.39988e+06,397,856322,1611,1.74097e+07,30054
FORMULA Diffusion2D-PT-D05N150-CTLFireability-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is FALSE !

***************************************

original formula: ((AX((((u1.cAMP__2_4_>=1)||(u3.cAMP__4_5_>=1))||(!(u1.cAMP__3_4_>=1)))) + EF(EG((u0.cAMP__1_1_>=1)))) * ((!((u1.cAMP__2_4_>=1)) + !(AX((u2.cAMP__5_3_>=1)))) * E(!((u2.cAMP__5_1_>=1)) U !((u0.cAMP__3_3_>=1)))))
=> equivalent forward existential formula: ([(EY((Init * !(E(TRUE U EG((u0.cAMP__1_1_>=1)))))) * !((((u1.cAMP__2_4_>=1)||(u3.cAMP__4_5_>=1))||(!(u1.cAMP__3_4_>=1)))))] = FALSE * ([((Init * !(!((u1.cAMP__2_4_>=1)))) * !(EX(!((u2.cAMP__5_3_>=1)))))] = FALSE * [(Init * !(E(!((u2.cAMP__5_1_>=1)) U !((u0.cAMP__3_3_>=1)))))] = FALSE))
Fast SCC detection found an SCC at level 1
Fast SCC detection found an SCC at level 2
Fast SCC detection found an SCC at level 3
(forward)formula 3,1,3459.9,12617068,1,0,5.58621e+06,1.10955e+07,389,7.67571e+06,1599,4.78344e+07,24440
FORMULA Diffusion2D-PT-D05N150-CTLFireability-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL USE_NUPN
Formula is TRUE !

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 25, 2018 12:10:04 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 25, 2018 12:10:04 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 25, 2018 12:10:04 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 45 ms
May 25, 2018 12:10:04 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 25 places.
May 25, 2018 12:10:04 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 144 transitions.
May 25, 2018 12:10:04 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 9 ms
May 25, 2018 12:10:04 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 25, 2018 12:10:04 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 46 ms
May 25, 2018 12:10:04 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 24 ms
Begin: Fri May 25 12:10:04 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Fri May 25 12:10:04 2018
network size: 25 nodes, 144 links, 288 weight
quality increased from -0.0439815 to 0.388021
end computation: Fri May 25 12:10:04 2018
level 1:
start computation: Fri May 25 12:10:04 2018
network size: 4 nodes, 16 links, 288 weight
quality increased from 0.388021 to 0.388021
end computation: Fri May 25 12:10:04 2018
End: Fri May 25 12:10:04 2018
Total duration: 0 sec
0.388021
May 25, 2018 12:10:04 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 25, 2018 12:10:04 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 20 ms
May 25, 2018 12:10:04 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 25, 2018 12:10:04 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 64 redundant transitions.
May 25, 2018 12:10:04 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLFireability.pnml.gal : 2 ms
May 25, 2018 12:10:04 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLFireability.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Diffusion2D-PT-D05N150"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Diffusion2D-PT-D05N150.tgz
mv Diffusion2D-PT-D05N150 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Diffusion2D-PT-D05N150, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r081-blw3-152649948300137"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;