Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............................................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-structural
Input is Angiogenesis-PT-25, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r023-qhx1-152646247800037
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-00
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-01
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-02
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-03
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-04
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-05
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-06
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-07
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-08
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-09
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-10
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-11
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-12
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-13
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-14
FORMULA_NAME Angiogenesis-PT-25-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1526909644531


BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-25 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool random-forest.
Model characteristics are: {'Examination': 'UpperBounds', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 3540131, 'Memory': 9609.28, 'Tool': 'lola'}, {'Time': 3540258, 'Memory': 9645.39, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'gspn'}].
UpperBounds gspn Angiogenesis-PT-25...
LOADING model.pnml ...
MODEL CLASS: P/T NET
PLACES: 39
TRANSITIONS: 64
CONSTANTS: 0
TEMPLATE VARS: 0
ARCS: 185
LOADING TIME: 0.648

SAVING AS model.(net/def) ...
SAVING TIME: 0.067
SAVING NAME MAP FILE model.id2name ...
TOTAL TIME: 1.802
OK.
Can't open file model.pin for r
GreatSPN/Meddly.
Copyright (C) 1987-2017, University of Torino, Italy.

Based on MEDDLY version 0.14.765
Copyright (C) 2009, Iowa State University Research Foundation, Inc.
website: http://meddly.sourceforge.net

Process ID: 45
MODEL NAME: model
39 places, 64 transitions.

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="mcc4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-structural"
echo " Input is Angiogenesis-PT-25, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r023-qhx1-152646247800037"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;