Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.....................................................................
/home/mcc/execution
total 212K
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.8K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-structural
Input is Angiogenesis-PT-01, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r023-qhx1-152646247700003
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1526905313915


BK_STOP 1526905353847

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-01 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool bmdt.
Model characteristics are: {'Examination': 'CTLCardinality', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 62, 'Memory': 103.32, 'Tool': 'gspn'}, {'Time': 159, 'Memory': 112.38, 'Tool': 'lola'}, {'Time': 281, 'Memory': 110.33, 'Tool': 'lola'}, {'Time': 1625, 'Memory': 165.88, 'Tool': 'gspn'}, {'Time': 2139, 'Memory': 2205.74, 'Tool': 'marcie'}, {'Time': 2238, 'Memory': 228.11, 'Tool': 'itstools'}, {'Time': 2246, 'Memory': 2206, 'Tool': 'marcie'}, {'Time': 2455, 'Memory': 222, 'Tool': 'itstools'}].
Learned tools are: [{'Tool': 'itstools'}].
Learned tool itstools is 36.096774193548384x far from the best tool gspn.
CTLCardinality itstools Angiogenesis-PT-01...
May 21, 2018 12:22:30 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-z3path, /usr/bin/z3, -yices2path, /usr/bin/yices, -ltsminpath, /usr/bin, -smt, -its, -pnfolder, /mcc-data, -examination, CTLCardinality]
May 21, 2018 12:22:30 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /mcc-data/model.pnml
May 21, 2018 12:22:30 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 70 ms
May 21, 2018 12:22:30 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 21, 2018 12:22:30 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 21, 2018 12:22:30 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /mcc-data/model.pnml.img.gal : 21 ms
May 21, 2018 12:22:31 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 119 ms
May 21, 2018 12:22:31 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /mcc-data/CTLCardinality.pnml.gal : 3 ms
May 21, 2018 12:22:31 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /mcc-data/CTLCardinality.ctl : 5 ms
Invoking ITS tools like this :CommandLine [args=[/usr/share/itscl/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201804131302/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /mcc-data/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /mcc-data/CTLCardinality.ctl], workingDir=/mcc-data]

its-ctl command run as :

/usr/share/itscl/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201804131302/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /mcc-data/CTLCardinality.pnml.gal -t CGAL -ctl /mcc-data/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,110,0.057182,4700,2,284,5,1209,6,0,220,974,0


Converting to forward existential form...Done !
original formula: !(A(!((GStarP3kP3<=Pip2)) U ((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2))))
=> equivalent forward existential formula: ([(FwdU(Init,!(((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2)))) * (!(!((GStarP3kP3<=Pip2))) * !(((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2)))))] != FALSE + [FwdG(Init,!(((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2))))] != FALSE)
(forward)formula 0,0,0.158123,5844,1,0,7,5398,22,1,996,1879,5
FORMULA Angiogenesis-PT-01-CTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarGStar>=3)
=> equivalent forward existential formula: [(Init * (KdStarGStar>=3))] != FALSE
(forward)formula 1,0,0.160859,6108,1,0,7,5398,23,1,997,1879,5
FORMULA Angiogenesis-PT-01-CTLCardinality-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (!((EG((Akt<=Pten)) + !((KdStarG<=KdStarGStarP3kStarP2)))) + AG((((GP3<=GStarPgP3)||(Gab1>=3))&&((Pg>=3)||(KdStarGStarPgP3>=2)))))
=> equivalent forward existential formula: [(FwdU((Init * !(!((EG((Akt<=Pten)) + !((KdStarG<=KdStarGStarP3kStarP2)))))),TRUE) * !((((GP3<=GStarPgP3)||(Gab1>=3))&&((Pg>=3)||(KdStarGStarPgP3>=2)))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions k2, k55, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :14/48/2/64
(forward)formula 2,0,0.300119,8220,1,0,130,18796,153,79,1456,10803,244
FORMULA Angiogenesis-PT-01-CTLCardinality-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EX(((!((KdStarGStarPgStarP3P2>=2)||(KdStarPgStar<=Gab1)))||((!(GStarP3>=3))||((GStarPgP3<=KdStarGStarPgP3)||(KdStarGStarPgStarP3>=1)))))
=> equivalent forward existential formula: [(EY(Init) * ((!((KdStarGStarPgStarP3P2>=2)||(KdStarPgStar<=Gab1)))||((!(GStarP3>=3))||((GStarPgP3<=KdStarGStarPgP3)||(KdStarGStarPgStarP3>=1)))))] != FALSE
(forward)formula 3,1,0.305937,8484,1,0,132,18821,154,80,1471,10857,246
FORMULA Angiogenesis-PT-01-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((Pg<=Pten) * AG(EX((DAG>=1))))
=> equivalent forward existential formula: ([(Init * !((Pg<=Pten)))] = FALSE * [(FwdU(Init,TRUE) * !(EX((DAG>=1))))] = FALSE)
(forward)formula 4,0,0.310278,8484,1,0,136,19076,155,84,1471,11074,251
FORMULA Angiogenesis-PT-01-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((!((!(KdStarGStarPgP3>=1))&&((KdStarGStarPgStarP3>=1)||(KdStarPgStarP2>=1))))||(GStarPgP3<=KdStarGP3)) + (!(EF((KdStarPg<=Pip2))) * (!((GP3>=3)) + AF((KdStarGStarP3kP3>=2)))))
=> equivalent forward existential formula: ([(FwdU((Init * !(((!((!(KdStarGStarPgP3>=1))&&((KdStarGStarPgStarP3>=1)||(KdStarPgStarP2>=1))))||(GStarPgP3<=KdStarGP3)))),TRUE) * (KdStarPg<=Pip2))] = FALSE * [FwdG(((Init * !(((!((!(KdStarGStarPgP3>=1))&&((KdStarGStarPgStarP3>=1)||(KdStarPgStarP2>=1))))||(GStarPgP3<=KdStarGP3)))) * !(!((GP3>=3)))),!((KdStarGStarP3kP3>=2)))] = FALSE)
(forward)formula 5,1,0.315076,8484,1,0,138,19082,161,84,1487,11084,255
FORMULA Angiogenesis-PT-01-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (AG(EX((Pten>=3))) * ((GStarPgP3<=KdStarGStarPgP3) * EG(!((KdStar<=GStarPgP3)))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * !(EX((Pten>=3))))] = FALSE * ([(Init * !((GStarPgP3<=KdStarGStarPgP3)))] = FALSE * [(Init * !(EG(!((KdStar<=GStarPgP3)))))] = FALSE))
(forward)formula 6,0,0.31909,8484,1,0,141,19309,170,88,1494,11220,265
FORMULA Angiogenesis-PT-01-CTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarGStarPgStarP2<=KdStarGStarPgStarP3)
=> equivalent forward existential formula: [(Init * (KdStarGStarPgStarP2<=KdStarGStarPgStarP3))] != FALSE
(forward)formula 7,1,0.320172,8484,1,0,142,19313,171,88,1496,11223,266
FORMULA Angiogenesis-PT-01-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (KdStarGStarP3k<=KdStarGStarP3)
=> equivalent forward existential formula: [(Init * (KdStarGStarP3k<=KdStarGStarP3))] != FALSE
(forward)formula 8,1,0.320909,8484,1,0,142,19313,172,88,1499,11227,267
FORMULA Angiogenesis-PT-01-CTLCardinality-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((Pten<=AktStar)&&(GStarP3<=P3k))
=> equivalent forward existential formula: [(Init * ((Pten<=AktStar)&&(GStarP3<=P3k)))] != FALSE
(forward)formula 9,0,0.321836,8484,1,0,143,19324,173,88,1505,11229,268
FORMULA Angiogenesis-PT-01-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((((KdStarGStarP3<=KdStarGStarPgStarP2)&&(KdStarGStarP3kStarP2>=3))||(!(KdStarGStarPgStarP3>=1)))&&(KdStarGStarP3kStarP2<=KdStarGStarPgStar))
=> equivalent forward existential formula: [(Init * ((((KdStarGStarP3<=KdStarGStarPgStarP2)&&(KdStarGStarP3kStarP2>=3))||(!(KdStarGStarPgStarP3>=1)))&&(KdStarGStarP3kStarP2<=KdStarGStarPgStar)))] != FALSE
(forward)formula 10,1,0.323546,8484,1,0,143,19324,174,88,1515,11231,269
FORMULA Angiogenesis-PT-01-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AF((KdStarGStar>=1))
=> equivalent forward existential formula: [FwdG(Init,!((KdStarGStar>=1)))] = FALSE
Hit Full ! (commute/partial/dont) 57/0/7
(forward)formula 11,0,0.329056,8484,1,0,145,19468,182,90,1544,11481,273
FORMULA Angiogenesis-PT-01-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((GP3>=1)&&(GStarPgP3<=DAGE)) + (AG(!((GStarP3kP3<=KdStarGStarPgStarP3))) * (EF((KdStarGStarP3>=3)) + !((Pip3>=1)))))
=> equivalent forward existential formula: ([(FwdU((Init * !(((GP3>=1)&&(GStarPgP3<=DAGE)))),TRUE) * (GStarP3kP3<=KdStarGStarPgStarP3))] = FALSE * [(((Init * !(((GP3>=1)&&(GStarPgP3<=DAGE)))) * !(!((Pip3>=1)))) * !(E(TRUE U (KdStarGStarP3>=3))))] = FALSE)
(forward)formula 12,0,0.3335,8748,1,0,146,19477,190,92,1555,11528,277
FORMULA Angiogenesis-PT-01-CTLCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((AX((KdStarGStarPgP3<=Akt)) * (P3k<=GP3)) * AX(((KdStarPg>=3)&&(KdStarGStarPgP3<=KdStarPg)))) * (PtP2<=KdStarG))
=> equivalent forward existential formula: ((([(EY(Init) * !((KdStarGStarPgP3<=Akt)))] = FALSE * [(Init * !((P3k<=GP3)))] = FALSE) * [(EY(Init) * !(((KdStarPg>=3)&&(KdStarGStarPgP3<=KdStarPg))))] = FALSE) * [(Init * !((PtP2<=KdStarG)))] = FALSE)
(forward)formula 13,0,0.335412,8748,1,0,147,19490,194,92,1568,11559,279
FORMULA Angiogenesis-PT-01-CTLCardinality-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarPgStar>=3)
=> equivalent forward existential formula: [(Init * (KdStarPgStar>=3))] != FALSE
(forward)formula 14,0,0.335759,8748,1,0,147,19490,195,92,1569,11559,279
FORMULA Angiogenesis-PT-01-CTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((Pip3<=KdStar) * (AF(!((Akt<=KdStarGStarPgStarP2))) * (((!(PtP2<=KdStarGStarPgP3))||((KdStarGStarP3kP3<=KdStarGStarPgStar)||(KdStarGStarP3k>=1)))||(Akt>=2))))
=> equivalent forward existential formula: ([(Init * !((Pip3<=KdStar)))] = FALSE * ([FwdG(Init,!(!((Akt<=KdStarGStarPgStarP2))))] = FALSE * [(Init * !((((!(PtP2<=KdStarGStarPgP3))||((KdStarGStarP3kP3<=KdStarGStarPgStar)||(KdStarGStarP3k>=1)))||(Akt>=2))))] = FALSE))
(forward)formula 15,1,0.342198,8748,1,0,149,19772,205,93,1595,11700,282
FORMULA Angiogenesis-PT-01-CTLCardinality-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="mcc4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-structural"
echo " Input is Angiogenesis-PT-01, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r023-qhx1-152646247700003"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;