Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...............................................................................................................................................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.3K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.0K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is Angiogenesis-PT-25, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r022-qhx1-152646247200038
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-25-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1526885375077


BK_STOP 1526885607999

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-25 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool bmdt.
Model characteristics are: {'Examination': 'CTLCardinality', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 835524, 'Memory': 15951.73, 'Tool': 'lola'}, {'Time': 851004, 'Memory': 15946.09, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
CTLCardinality lola Angiogenesis-PT-25...
----- Start make prepare stderr -----

Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
Angiogenesis-PT-25: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-25: translating PT formula CTLCardinality into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
CTLCardinality @ Angiogenesis-PT-25 @ 3538 seconds
Makefile:222: recipe for target 'verify' failed
make: [verify] Error 134 (ignored)
----- Start make result stdout -----
----- Start make result stderr -----
lola: LoLA will run for 3538 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-25-CTLCardinality.task
lola: E (((((AktStar <= KdStarPg) AND (KdStarGStarP3kStarP2 <= AktP3)) OR (Akt <= KdStarGStarP3kStar)) U A (G ((2 <= Gab1))))) : A (G (((KdStarGStarPgStarP3 <= GP3) OR (2 <= KdStarGStarPgStarP2)))) : E ((A (G ((AktStar <= Pip2))) U (3 <= KdStarGStarP3kStarP2))) : E (F ((E (X ((1 <= PtP3))) AND (((PtP3P2 <= KdStarPg) AND (1 <= KdStarGStarP3kP3)) OR ((Pip3 <= KdStarG) AND (1 <= KdStarGStarP3kStarP2)))))) : (A (G ((KdStarGStarP3kStarP3 <= KdStarGStarPgStarP3))) OR A (F (A (F ((1 <= KdStarGStarP3)))))) : ((A (X (((1 <= Gab1) AND (2 <= KdStarGStarPg)))) OR (2 <= KdStarGStarPgStarP2)) OR A (X (A (G ((KdStarGStarPgStarP3P2 <= PtP3P2)))))) : E (((KdStarGStarPgStar <= 1) U A (G ((2 <= KdStarGStarP3kStarP3))))) : E (F (((KdStarGStarP3kStarP2 <= 2) AND (Pg + 1 <= KdStarGStarP3kStar) AND (GStarP3kP3 + 1 <= DAGE)))) : E (F ((1 <= GStarPgP3))) : E ((((KdStarGStarP3 <= KdStarGP3) AND (KdStarGStarP3kStarP3P2 <= Pten)) U ((P3k <= DAG) AND (2 <= P3k) AND (KdStarGStarPgStarP2 + 1 <= Gab1)))) : A (F (E (((KdStarGStarP3kStarP3P2 <= Pten) U (3 <= KdStarGStarPg))))) : E (G (A (G (((2 <= KdStarGStarP3kStarP3P2) OR (KdStarGStarP3kStarP3 <= KdStarGStar)))))) : A (G (E (G ((KdStarGStarPgStarP3P2 <= 2))))) : (E (((1 <= KdStarGStarP3kP3) U ((KdStarGStarP3kStar <= KdStarGStarP3kP3) OR (1 <= AktP3)))) AND E ((((PtP2 <= Akt) AND (KdStarPg <= KdStarGStarP3kStar)) U (3 <= KdStarGStarPg)))) : E (F (((3 <= PtP3) AND (2 <= DAG) AND ((3 <= KdStarGP3) OR (PtP3P2 <= KdStarGStarPgStarP3)) AND (Akt <= KdStarGStarPgP3) AND (KdStarGStarP3 + 1 <= KdStarG)))) : E (F (E (F ((2 <= KdStarGStarP3kStarP3P2)))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (((((AktStar <= KdStarPg) AND (KdStarGStarP3kStarP2 <= AktP3)) OR (Akt <= KdStarGStarP3kStar)) U A (G ((2 <= Gab1)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E((((AktStar <= KdStarPg) AND (KdStarGStarP3kStarP2 <= AktP3)) OR (Akt <= KdStarGStarP3kStar)) U NOT(E(TRUE U (Gab1 <= 1))))
lola: processed formula length: 125
lola: 3 rewrites
lola: formula mentions 0 of 39 places; total mentions: 0
lola: closed formula file Angiogenesis-PT-25-CTLCardinality.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 1093500 markings, 2073159 edges, 2692695180330401792 markings/sec, 0 secs
lola: 2145126 markings, 4064332 edges, 210325 markings/sec, 5 secs
lola: 3055398 markings, 6500701 edges, 182054 markings/sec, 10 secs
lola: 4243210 markings, 9053248 edges, 237562 markings/sec, 15 secs
lola: 4975939 markings, 12322980 edges, 146546 markings/sec, 20 secs
lola: 5531647 markings, 15496665 edges, 111142 markings/sec, 25 secs
lola: 6247647 markings, 18804918 edges, 143200 markings/sec, 30 secs
lola: 6763763 markings, 21892310 edges, 103223 markings/sec, 35 secs
lola: 7178633 markings, 24811990 edges, 82974 markings/sec, 40 secs
lola: 7793626 markings, 28017302 edges, 122999 markings/sec, 45 secs
lola: 8401214 markings, 31292670 edges, 121518 markings/sec, 50 secs
lola: 8981893 markings, 34041105 edges, 116136 markings/sec, 55 secs
lola: 9335157 markings, 37200509 edges, 70653 markings/sec, 60 secs
lola: 9986549 markings, 39770569 edges, 130278 markings/sec, 65 secs
lola: 10177745 markings, 42558026 edges, 38239 markings/sec, 70 secs
lola: 10684812 markings, 45461851 edges, 101413 markings/sec, 75 secs
lola: 11098471 markings, 47959463 edges, 82732 markings/sec, 80 secs
lola: 11415230 markings, 50767453 edges, 63352 markings/sec, 85 secs
lola: 11757392 markings, 53423202 edges, 68432 markings/sec, 90 secs
lola: 12481313 markings, 56488671 edges, 144784 markings/sec, 95 secs
lola: 13198658 markings, 59663408 edges, 143469 markings/sec, 100 secs
lola: 13723308 markings, 62918320 edges, 104930 markings/sec, 105 secs
lola: 14416802 markings, 65662292 edges, 138699 markings/sec, 110 secs
lola: 14862618 markings, 68366775 edges, 89163 markings/sec, 115 secs
lola: 15007999 markings, 71358501 edges, 29076 markings/sec, 120 secs
lola: 15559807 markings, 74370916 edges, 110362 markings/sec, 125 secs
lola: 16203909 markings, 77011915 edges, 128820 markings/sec, 130 secs
lola: 16840715 markings, 79458322 edges, 127361 markings/sec, 135 secs
lola: 17112853 markings, 81938559 edges, 54428 markings/sec, 140 secs
lola: 17221360 markings, 84618034 edges, 21701 markings/sec, 145 secs
lola: 17329162 markings, 87486139 edges, 21560 markings/sec, 150 secs
lola: 18024530 markings, 90319431 edges, 139074 markings/sec, 155 secs
lola: 18659544 markings, 92903777 edges, 127003 markings/sec, 160 secs
lola: 19205171 markings, 95187303 edges, 109125 markings/sec, 165 secs
lola: 19383808 markings, 97731687 edges, 35727 markings/sec, 170 secs
lola: 19456690 markings, 100285808 edges, 14576 markings/sec, 175 secs
lola: 19718409 markings, 103248777 edges, 52344 markings/sec, 180 secs
lola: 20341593 markings, 105842635 edges, 124637 markings/sec, 185 secs
lola: 20937567 markings, 108185762 edges, 119195 markings/sec, 190 secs
lola: 21118454 markings, 110625766 edges, 36177 markings/sec, 195 secs
lola: 21169462 markings, 113124671 edges, 10202 markings/sec, 200 secs
lola: 21724007 markings, 115931317 edges, 110909 markings/sec, 205 secs
lola: 22085645 markings, 118283207 edges, 72328 markings/sec, 210 secs
lola: 22380908 markings, 120872400 edges, 59053 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: '
'
Aborted (core dumped)
FORMULA Angiogenesis-PT-25-CTLCardinality-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-25-CTLCardinality-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Kill lola and sara stderr -----
----- Finished stderr -----
----- Finished stdout -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-25"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-25.tgz
mv Angiogenesis-PT-25 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is Angiogenesis-PT-25, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r022-qhx1-152646247200038"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;