Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
............................................................................................................................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 4.3K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.2K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 3.4K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 16K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool mcc4mcc-full
Input is Angiogenesis-PT-15, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r022-qhx1-152646247100025
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-00
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-01
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-02
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-03
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-04
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-05
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-06
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-07
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-08
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-09
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-10
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-11
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-12
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-13
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-14
FORMULA_NAME Angiogenesis-PT-15-CTLFireability-15

=== Now, execution of the tool begins

BK_START 1526884574129


BK_STOP 1526884809509

--------------------
content from stderr:

Prefix is 65b80f64.
Reading known information in /usr/share/mcc4mcc/65b80f64-known.json.
Reading learned information in /usr/share/mcc4mcc/65b80f64-learned.json.
Reading value translations in /usr/share/mcc4mcc/65b80f64-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-15 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool voting-classifier.
Model characteristics are: {'Examination': 'CTLFireability', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
/usr/local/lib/python3.6/dist-packages/sklearn/preprocessing/label.py:151: DeprecationWarning: The truth value of an empty array is ambiguous. Returning False, but in future this will result in an error. Use `array.size > 0` to check that an array is not empty.
if diff:
Known tools are: [{'Time': 1408948, 'Memory': 15936.24, 'Tool': 'lola'}, {'Time': 1428399, 'Memory': 15951.29, 'Tool': 'lola'}, {'Time': 2875631, 'Memory': 15947.54, 'Tool': 'itstools'}, {'Time': 2947400, 'Memory': 15948.12, 'Tool': 'itstools'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
CTLFireability lola Angiogenesis-PT-15...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
Angiogenesis-PT-15: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-15: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
CTLFireability @ Angiogenesis-PT-15 @ 3538 seconds
make: [verify] Error 134 (ignored)
Makefile:222: recipe for target 'verify' failed
----- Start make result stdout -----
----- Start make result stderr -----
lola: LoLA will run for 3538 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-15-CTLFireability.task
lola: (NOT(E (F (A (G (FIREABLE(k38)))))) OR E (X (A (G (NOT FIREABLE(k13)))))) : E (F ((FIREABLE(k15) AND A ((FIREABLE(k18) U FIREABLE(k7)))))) : A (F (A (G (E (F (FIREABLE(k30))))))) : E (((NOT FIREABLE(k27) OR NOT FIREABLE(k38) OR (NOT FIREABLE(k39) AND NOT FIREABLE(k61))) U A ((FIREABLE(k52) U FIREABLE(k14))))) : (A (G (E (F (NOT FIREABLE(t0))))) OR FIREABLE(k40)) : (NOT(A (G (E (F (FIREABLE(k38)))))) OR (((NOT FIREABLE(k17) OR (FIREABLE(k61) AND FIREABLE(k26)) OR FIREABLE(k27)) AND ((FIREABLE(k43) AND FIREABLE(k46) AND FIREABLE(k57)) OR (FIREABLE(k59) AND (FIREABLE(k42) OR FIREABLE(k44))))) OR (((FIREABLE(k41) AND FIREABLE(k46) AND (FIREABLE(k29) OR FIREABLE(k54))) AND E (G (FIREABLE(k44)))) AND (E (X (FIREABLE(k25))) AND A (X (FIREABLE(k58))))))) : NOT(E (F (A (G (FIREABLE(k45)))))) : (((FIREABLE(k16) AND A (F (FIREABLE(k55)))) OR (E (F (FIREABLE(k24))) OR A ((FIREABLE(k50) U FIREABLE(k46))))) AND (E ((NOT FIREABLE(k29) U FIREABLE(k63))) OR NOT((FIREABLE(k60) OR A (X (FIREABLE(k43))))))) : E ((NOT(A (X (FIREABLE(k37)))) U ((FIREABLE(k63) OR (FIREABLE(k8) AND FIREABLE(k5))) AND A (X (FIREABLE(k40)))))) : A (G (E (X ((FIREABLE(k25) OR FIREABLE(k21) OR NOT FIREABLE(k5)))))) : NOT(A (G (FIREABLE(t0)))) : A (X (E (F (A (X (FIREABLE(k19))))))) : E (F ((((FIREABLE(k46) AND FIREABLE(k8) AND FIREABLE(t0)) OR E (F (FIREABLE(k26)))) OR (FIREABLE(k62) AND FIREABLE(k6) AND FIREABLE(t1) AND (FIREABLE(k21) OR FIREABLE(k25) OR FIREABLE(k36)))))) : E (F ((E ((FIREABLE(k61) U FIREABLE(k49))) OR A (X ((FIREABLE(k5) AND FIREABLE(k10))))))) : E (F ((E ((FIREABLE(k46) U FIREABLE(k2))) AND ((FIREABLE(k46) AND FIREABLE(k36) AND NOT FIREABLE(k12)) OR (FIREABLE(k43) AND FIREABLE(k56) AND NOT FIREABLE(k20)))))) : E (F (FIREABLE(k15)))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: (NOT(E (F (A (G (FIREABLE(k38)))))) OR E (X (A (G (NOT FIREABLE(k13))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (F (NOT FIREABLE(k38)))))
lola: ========================================
lola: SUBTASK
lola: checking liveness
lola: liveness not yet implemented, converting to CTL...
lola: processed formula: NOT(E(TRUE U NOT(E(TRUE U NOT FIREABLE(k38)))))
lola: processed formula length: 47
lola: 7 rewrites
lola: formula mentions 0 of 39 places; total mentions: 0
lola: closed formula file Angiogenesis-PT-15-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 860954 markings, 3299278 edges, 2690661083819016192 markings/sec, 0 secs
lola: 1644996 markings, 6762939 edges, 156808 markings/sec, 5 secs
lola: 2447028 markings, 10309444 edges, 160406 markings/sec, 10 secs
lola: 3247726 markings, 13844568 edges, 160140 markings/sec, 15 secs
lola: 4037772 markings, 17259329 edges, 158009 markings/sec, 20 secs
lola: 4781183 markings, 20405011 edges, 148682 markings/sec, 25 secs
lola: 5515352 markings, 23316238 edges, 146834 markings/sec, 30 secs
lola: 6233273 markings, 26412628 edges, 143584 markings/sec, 35 secs
lola: 6957893 markings, 29241303 edges, 144924 markings/sec, 40 secs
lola: 7667599 markings, 32203595 edges, 141941 markings/sec, 45 secs
lola: 8375406 markings, 35235506 edges, 141561 markings/sec, 50 secs
lola: 9078648 markings, 38164412 edges, 140648 markings/sec, 55 secs
lola: 9777039 markings, 41034897 edges, 139678 markings/sec, 60 secs
lola: 10469059 markings, 43901007 edges, 138404 markings/sec, 65 secs
lola: 11160603 markings, 46769492 edges, 138309 markings/sec, 70 secs
lola: 11848181 markings, 49674930 edges, 137516 markings/sec, 75 secs
lola: 12531879 markings, 52330012 edges, 136740 markings/sec, 80 secs
lola: 13205935 markings, 55195538 edges, 134811 markings/sec, 85 secs
lola: 13880621 markings, 58083189 edges, 134937 markings/sec, 90 secs
lola: 14545189 markings, 60842414 edges, 132914 markings/sec, 95 secs
lola: 15224768 markings, 63588162 edges, 135916 markings/sec, 100 secs
lola: 15871804 markings, 66297799 edges, 129407 markings/sec, 105 secs
lola: 16531439 markings, 69046276 edges, 131927 markings/sec, 110 secs
lola: 17198089 markings, 71816993 edges, 133330 markings/sec, 115 secs
lola: 17860980 markings, 74637296 edges, 132578 markings/sec, 120 secs
lola: 18533235 markings, 77444664 edges, 134451 markings/sec, 125 secs
lola: 19198446 markings, 80230129 edges, 133042 markings/sec, 130 secs
lola: 19874191 markings, 83030863 edges, 135149 markings/sec, 135 secs
lola: 20528120 markings, 85714839 edges, 130786 markings/sec, 140 secs
lola: 21183789 markings, 88469766 edges, 131134 markings/sec, 145 secs
lola: 21839755 markings, 91214699 edges, 131193 markings/sec, 150 secs
lola: 22486540 markings, 93939435 edges, 129357 markings/sec, 155 secs
lola: 23130214 markings, 96657594 edges, 128735 markings/sec, 160 secs
lola: 23773178 markings, 99382166 edges, 128593 markings/sec, 165 secs
lola: 24410277 markings, 102008700 edges, 127420 markings/sec, 170 secs
lola: 25040984 markings, 104619964 edges, 126141 markings/sec, 175 secs
lola: 25678733 markings, 107308080 edges, 127550 markings/sec, 180 secs
lola: 26315693 markings, 109958115 edges, 127392 markings/sec, 185 secs
lola: 26958727 markings, 112631921 edges, 128607 markings/sec, 190 secs
lola: 27584744 markings, 115232930 edges, 125203 markings/sec, 195 secs
lola: 28226634 markings, 117959213 edges, 128378 markings/sec, 200 secs
lola: 28866681 markings, 120631025 edges, 128009 markings/sec, 205 secs
lola: 29498248 markings, 123284440 edges, 126313 markings/sec, 210 secs
lola: 30143073 markings, 125940972 edges, 128965 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: caught signal User defined signal 1 - aborting LoLA
lola: Child process aborted or communication problem between parent and child process
terminate called after throwing an instance of 'std::runtime_error'
what(): parse error at position 0: unexpected character, last read: 'P'
Aborted (core dumped)
FORMULA Angiogenesis-PT-15-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-1 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-3 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-4 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-5 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-6 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-8 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-9 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-10 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-12 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-14 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-15-CTLFireability-15 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stderr -----
----- Kill lola and sara stdout -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-15"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="mcc4mcc-full"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-15.tgz
mv Angiogenesis-PT-15 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool mcc4mcc-full"
echo " Input is Angiogenesis-PT-15, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r022-qhx1-152646247100025"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;