Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..........................
/home/mcc/execution
total 212K
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.8K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstoolsl
Input is Angiogenesis-PT-01, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r021-qhx1-152646246200007
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-00
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-01
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-02
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-03
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-04
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-05
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-06
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-07
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-08
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-09
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-10
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-11
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-12
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-13
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-14
FORMULA_NAME Angiogenesis-PT-01-ReachabilityFireability-15

=== Now, execution of the tool begins

BK_START 1527200657880

FORMULA Angiogenesis-PT-01-ReachabilityFireability-15 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-12 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-11 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-09 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-05 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-04 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-03 TRUE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-02 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-01 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
FORMULA Angiogenesis-PT-01-ReachabilityFireability-00 FALSE TECHNIQUES TOPOLOGICAL INITIAL_STATE
Using solver Z3 to compute partial order matrices.
Built C files in :
/home/mcc/execution
Converted graph to binary with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/convert-linux64, -i, /tmp/graph3961859068957039475.txt, -o, /tmp/graph3961859068957039475.bin, -w, /tmp/graph3961859068957039475.weights], workingDir=null]
Built communities with : CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.louvain.binaries_1.0.0.201805241334/bin/louvain-linux64, /tmp/graph3961859068957039475.bin, -l, -1, -v, -w, /tmp/graph3961859068957039475.weights, -q, 0, -e, 0.001], workingDir=null]
Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityFireability.pnml.gal, -t, CGAL, -reachable-file, ReachabilityFireability.prop, --nowitness], workingDir=/home/mcc/execution]

its-reach command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805241334/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityFireability.pnml.gal -t CGAL -reachable-file ReachabilityFireability.prop --nowitness
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 64 rows 39 cols
invariant :GStarP3kP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + P3k = 1
invariant :Pten + PtP2 + PtP3 + PtP3P2 = 1
invariant :Akt + AktP3 + AktStar = 1
invariant :DAGE + Enz = 1
invariant :Gab1 + GP3 + GStarP3 + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + -1'KdStarPg + -1'KdStarPgStar + -1'KdStarPgStarP2 + -1'P3k + -1'Pg = -1
invariant :GStarPgP3 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 + Pg = 1
invariant :KdStar + KdStarG + KdStarGP3 + KdStarGStar + KdStarGStarP3 + KdStarGStarP3k + KdStarGStarP3kP3 + KdStarGStarP3kStar + KdStarGStarP3kStarP2 + KdStarGStarP3kStarP3 + KdStarGStarP3kStarP3P2 + KdStarGStarPg + KdStarGStarPgP3 + KdStarGStarPgStar + KdStarGStarPgStarP2 + KdStarGStarPgStarP3 + KdStarGStarPgStarP3P2 + KdStarPg + KdStarPgStar + KdStarPgStarP2 = 1
invariant :AktP3 + DAG + -1'Enz + -1'Gab1 + -1'KdStarG + -1'KdStarGStar + -1'KdStarGStarP3k + -1'KdStarGStarP3kStar + KdStarGStarP3kStarP3P2 + -1'KdStarGStarPg + -1'KdStarGStarPgStar + KdStarGStarPgStarP3P2 + KdStarPgStarP2 + Pip2 + Pip3 + PtP2 + PtP3 + 2'PtP3P2 = -1
Loading property file ReachabilityFireability.prop.
Read [reachable] property : Angiogenesis-PT-01-ReachabilityFireability-06 with value :(((i2.u3.GStarP3>=1)&&(i2.u3.P3k>=1))&&((((i2.u3.GStarP3kP3>=1)&&(i2.u3.KdStar>=1))||(((i1.u7.KdStarGStarPgStar>=1)&&(i5.u12.Pip2>=1))&&((i2.u3.KdStarGStarP3>=1)&&(i4.u10.Pg>=1))))&&((!(i5.u0.AktP3>=1))||((i2.u3.KdStarGStarP3>=1)||((u5.KdStarGStarP3kStar>=1)&&(i5.u12.Pip2>=1))))))
Read [reachable] property : Angiogenesis-PT-01-ReachabilityFireability-07 with value :(((i5.u0.AktP3>=1)||((i2.u3.GStarP3kP3>=1)&&(i2.u3.KdStar>=1)))&&(!(((i2.u3.GStarP3kP3>=1)||((i2.u3.KdStarGStarP3>=1)&&(i2.u3.P3k>=1)))||(i2.u3.KdStarGStarP3kP3>=1))))
Read [invariant] property : Angiogenesis-PT-01-ReachabilityFireability-08 with value :(((i4.u8.KdStarGStarPgStarP3P2>=1)||((!((i2.u3.GStarP3>=1)&&(i2.u3.KdStar>=1)))&&(i2.u3.KdStarGStarP3kP3>=1)))||((((i0.u9.KdStarPgStarP2>=1)||((i5.u0.Pip3>=1)&&(i5.u0.Akt>=1)))&&((i2.u3.GStarP3>=1)&&(i2.u3.KdStar>=1)))||(((i0.u9.KdStarPg>=1)||(i4.u8.KdStarGStarPgStarP3P2>=1))||(!(u5.KdStarGStarP3k>=1)))))
Read [reachable] property : Angiogenesis-PT-01-ReachabilityFireability-10 with value :(((((i0.u1.DAGE>=1)&&(i2.u3.KdStarGP3>=1))&&(i0.u9.KdStarPgStarP2>=1))&&(((i0.u9.KdStarPg>=1)&&(i5.u0.AktP3>=1))&&(!(u5.KdStarGStarP3kStarP2>=1))))&&((i1.u2.Gab1>=1)&&(i5.u0.Pip3>=1)))
Read [invariant] property : Angiogenesis-PT-01-ReachabilityFireability-13 with value :(!(i2.u3.KdStarGStarP3>=1))
Read [reachable] property : Angiogenesis-PT-01-ReachabilityFireability-14 with value :(i4.u8.KdStarGStarPgStarP3P2>=1)
built 17 ordering constraints for composite.
built 8 ordering constraints for composite.
built 15 ordering constraints for composite.
built 20 ordering constraints for composite.
built 14 ordering constraints for composite.
built 24 ordering constraints for composite.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis\_PT\_01\_flat\_flat\_flat\_flat\_mod,110,0.090725,4336,109,37,727,197,217,718,59,338,0
Total reachable state count : 110

Verifying 6 reachability properties.
Reachability property Angiogenesis-PT-01-ReachabilityFireability-06 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : Angiogenesis-PT-01-ReachabilityFireability-06

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-06,0,0.095867,4716,1,0,727,197,276,718,70,338,128
Reachability property Angiogenesis-PT-01-ReachabilityFireability-07 is true.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-07,2,0.096738,4728,25,13,727,197,297,718,83,338,145
Invariant property Angiogenesis-PT-01-ReachabilityFireability-08 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-08,13,0.098622,4728,39,17,727,197,339,718,95,338,347
Reachability property Angiogenesis-PT-01-ReachabilityFireability-10 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-10 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : Angiogenesis-PT-01-ReachabilityFireability-10

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-10,0,0.099345,4728,1,0,727,197,374,718,97,338,351
Invariant property Angiogenesis-PT-01-ReachabilityFireability-13 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-13,1,0.09953,4728,24,15,727,197,377,718,97,338,351
Reachability property Angiogenesis-PT-01-ReachabilityFireability-14 does not hold.
FORMULA Angiogenesis-PT-01-ReachabilityFireability-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL COLLATERAL_PROCESSING USE_NUPN
No reachable states exhibit your property : Angiogenesis-PT-01-ReachabilityFireability-14

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-01-ReachabilityFireability-14,0,0.099701,4728,1,0,727,197,377,718,97,338,351
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
WARNING : LTS min runner thread was asked to interrupt. Dying gracefully.

BK_STOP 1527200678118

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityFireability -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination ReachabilityFireability -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -louvain -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 24, 2018 10:24:35 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, ReachabilityFireability, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -louvain, -smt]
May 24, 2018 10:24:35 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 24, 2018 10:24:35 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 69 ms
May 24, 2018 10:24:35 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 24, 2018 10:24:35 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 15 ms
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-00 is trivially false : it is not verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-01 is trivially false : it is not verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-02 is trivially false : it is not verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-01-ReachabilityFireability-03 is trivially true : it is verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-01-ReachabilityFireability-04 is trivially true : it is verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-05 is trivially false : it is not verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-09 is trivially false : it is not verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-01-ReachabilityFireability-11 is trivially true : it is verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-12 is trivially false : it is not verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Invariant property Angiogenesis-PT-01-ReachabilityFireability-15 is trivially false : it is not verified in initial state.
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 105 ms
May 24, 2018 10:24:35 PM fr.lip6.move.gal.application.MccTranslator applyOrder
INFO: Applying decomposition
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 25 ms
May 24, 2018 10:24:35 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 27 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 49 ms
Begin: Thu May 24 22:24:36 2018

Computation of communities with the Newman-Girvan Modularity quality function

level 0:
start computation: Thu May 24 22:24:36 2018
network size: 39 nodes, 138 links, 128 weight
quality increased from -0.0310669 to 0.427765
end computation: Thu May 24 22:24:36 2018
level 1:
start computation: Thu May 24 22:24:36 2018
network size: 13 nodes, 69 links, 128 weight
quality increased from 0.427765 to 0.482574
end computation: Thu May 24 22:24:36 2018
level 2:
start computation: Thu May 24 22:24:36 2018
network size: 6 nodes, 32 links, 128 weight
quality increased from 0.482574 to 0.482574
end computation: Thu May 24 22:24:36 2018
End: Thu May 24 22:24:36 2018
Total duration: 0 sec
0.482574
May 24, 2018 10:24:36 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
May 24, 2018 10:24:36 PM fr.lip6.move.gal.instantiate.CompositeBuilder decomposeWithOrder
INFO: Decomposing Gal with order
May 24, 2018 10:24:36 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
May 24, 2018 10:24:36 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 70 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.instantiate.CompositeBuilder rewriteArraysToAllowPartition
INFO: Rewriting arrays to variables to allow decomposition.
May 24, 2018 10:24:36 PM fr.lip6.move.gal.instantiate.Instantiator fuseIsomorphicEffects
INFO: Removed a total of 33 redundant transitions.
May 24, 2018 10:24:36 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityFireability.pnml.gal : 5 ms
May 24, 2018 10:24:36 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /home/mcc/execution/ReachabilityFireability.prop : 5 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 8 place invariants in 26 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd checkProperties
INFO: Ran tautology test, simplified 0 / 6 in 649 ms.
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-06(UNSAT) depth K=0 took 9 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-07(UNSAT) depth K=0 took 16 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-08(UNSAT) depth K=0 took 17 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-10(UNSAT) depth K=0 took 5 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-13(UNSAT) depth K=0 took 9 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.semantics.DeterministicNextBuilder getDeterministicNext
INFO: Input system was already deterministic with 64 transitions.
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-14(UNSAT) depth K=0 took 7 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-06(UNSAT) depth K=1 took 15 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-07(UNSAT) depth K=1 took 7 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-08(UNSAT) depth K=1 took 18 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-10(UNSAT) depth K=1 took 4 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd checkProperties
WARNING: Interrupting SMT solver.
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solution for property Angiogenesis-PT-01-ReachabilityFireability-13(UNSAT) depth K=1 took 14 ms
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver checkSat
WARNING: SMT solver unexpectedly returned 'unknown' answer, retrying.
Skipping mayMatrices nes/nds SMT solver raised an exception or timeout :(error "Failed to check-sat")
May 24, 2018 10:24:36 PM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (declare-fun s () (Array Int (Array Int Int))) with error
May 24, 2018 10:24:36 PM org.smtlib.impl.Script execute
WARNING: Script execution failed on command (define-fun _enabledsrc__0 ((src (Array Int Int))) Bool (and (>= (select src 6) 1) (>= (select src 11) 1))) with error (error "Error writing to Z3 solver: java.io.IOException: Stream closed")
Exception in thread "Thread-8" java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:297)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:305)
at fr.lip6.move.gal.gal2smt.bmc.KInductionSolver.init(KInductionSolver.java:116)
at fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver.init(NecessaryEnablingsolver.java:71)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printLabels(Gal2PinsTransformerNext.java:471)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.printDependencyMatrix(Gal2PinsTransformerNext.java:209)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.buildBodyFile(Gal2PinsTransformerNext.java:85)
at fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext.transform(Gal2PinsTransformerNext.java:830)
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:71)
at java.lang.Thread.run(Thread.java:748)
java.lang.RuntimeException: Error when declaring system variables to SMT solver.(error "Error writing to Z3 solver: java.io.IOException: Stream closed")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.init(NextBMCSolver.java:93)
at fr.lip6.move.gal.gal2smt.bmc.KInductionSolver.init(KInductionSolver.java:59)
at fr.lip6.move.gal.gal2smt.smt.ISMTSolver.init(ISMTSolver.java:17)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runKInduction(Gal2SMTFrontEnd.java:278)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.access$1(Gal2SMTFrontEnd.java:274)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd$2.run(Gal2SMTFrontEnd.java:166)
at java.lang.Thread.run(Thread.java:748)
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver checkSat
WARNING: SMT solver unexpectedly returned 'unknown' answer, retrying.
java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:297)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:305)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verifyAssertion(NextBMCSolver.java:452)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verify(NextBMCSolver.java:435)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runBMC(Gal2SMTFrontEnd.java:378)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.access$0(Gal2SMTFrontEnd.java:350)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd$1.run(Gal2SMTFrontEnd.java:159)
at java.lang.Thread.run(Thread.java:748)
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
WARNING: Unexpected error occurred while running SMT. Was verifying Angiogenesis-PT-01-ReachabilityFireability-14 SMT depth 1
java.lang.RuntimeException: java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runBMC(Gal2SMTFrontEnd.java:404)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.access$0(Gal2SMTFrontEnd.java:350)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd$1.run(Gal2SMTFrontEnd.java:159)
at java.lang.Thread.run(Thread.java:748)
Caused by: java.lang.RuntimeException: SMT solver raised an exception or timeout :(error "Failed to check-sat")
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:297)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.checkSat(NextBMCSolver.java:305)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verifyAssertion(NextBMCSolver.java:452)
at fr.lip6.move.gal.gal2smt.bmc.NextBMCSolver.verify(NextBMCSolver.java:435)
at fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd.runBMC(Gal2SMTFrontEnd.java:378)
... 3 more
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: During BMC, SMT solver timed out at depth 1
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2smt.Gal2SMTFrontEnd runBMC
INFO: BMC solving timed out (3600000 secs) at depth 1
May 24, 2018 10:24:36 PM fr.lip6.move.gal.application.SMTRunner$2 run
INFO: SMT solved 0/ 6 properties. Interrupting other analysis methods.
May 24, 2018 10:24:36 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 633ms conformant to PINS in folder :/home/mcc/execution

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="itstoolsl"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstoolsl"
echo " Input is Angiogenesis-PT-01, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r021-qhx1-152646246200007"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;