Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
............................
/home/mcc/execution
total 212K
-rw-r--r-- 1 mcc users 4.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.7K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is Angiogenesis-PT-10, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r020-qhx1-152646244300017
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-10-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1526836038393

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,8.22646e+11,52.8399,537152,2,131436,5,3.11559e+06,6,0,220,3.0591e+06,0


Converting to forward existential form...Done !
original formula: ((EF(!((KdStarGStarP3k<=Enz))) * (AktP3<=KdStarGStarPgStarP2)) + !(AF((KdStarGStarPg<=KdStarGStarP3k))))
=> equivalent forward existential formula: ([(FwdU((Init * (AktP3<=KdStarGStarPgStarP2)),TRUE) * !((KdStarGStarP3k<=Enz)))] != FALSE + [FwdG(Init,!((KdStarGStarPg<=KdStarGStarP3k)))] != FALSE)
(forward)formula 0,1,88.1433,573756,1,0,8,3.20127e+06,11,2,751,3.19155e+06,4
FORMULA Angiogenesis-PT-10-CTLCardinality-00 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: E((KdStarPgStarP2<=KdStarGStarP3kStar) U AX((DAG>=2)))
=> equivalent forward existential formula: [(FwdU(Init,(KdStarPgStarP2<=KdStarGStarP3kStar)) * !(EX(!((DAG>=2)))))] != FALSE
Reverse transition relation is NOT exact ! Due to transitions k2, k55, k60, k7, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
Hit Full ! (commute/partial/dont) 58/0/6
(forward)formula 1,1,290.833,2259028,1,0,85,1.13865e+07,156,55,1910,1.1693e+07,142
FORMULA Angiogenesis-PT-10-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (((EF((KdStarGStarPgP3>=1)) + (KdStarGStarP3kStarP3P2>=1)) + A((KdStarGStarPgP3<=Akt) U (Pip3>=2))) * (KdStarGStarPgP3<=GP3))
=> equivalent forward existential formula: (([(FwdU((Init * (KdStarGStarPgP3<=GP3)),TRUE) * (KdStarGStarPgP3>=1))] != FALSE + [((Init * (KdStarGStarPgP3<=GP3)) * (KdStarGStarP3kStarP3P2>=1))] != FALSE) + [(((Init * (KdStarGStarPgP3<=GP3)) * !(EG(!((Pip3>=2))))) * !(E(!((Pip3>=2)) U (!((KdStarGStarPgP3<=Akt)) * !((Pip3>=2))))))] != FALSE)
(forward)formula 2,1,290.846,2259028,1,0,86,1.13865e+07,158,56,1912,1.1693e+07,144
FORMULA Angiogenesis-PT-10-CTLCardinality-02 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AX(EF(((Gab1<=KdStarGStarPgStarP3)||(KdStarGStarP3>=3))))
=> equivalent forward existential formula: [(EY(Init) * !(E(TRUE U ((Gab1<=KdStarGStarPgStarP3)||(KdStarGStarP3>=3)))))] = FALSE
(forward)formula 3,1,663.574,4589020,1,0,90,2.58583e+07,14,58,1055,2.23288e+07,6
FORMULA Angiogenesis-PT-10-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (AG(!(((KdStarGStarP3kStarP3<=GStarPgP3)&&(GStarPgP3>=2)))) + AG(!(((GStarP3kP3<=KdStarGP3)||(DAGE<=Enz)))))
=> equivalent forward existential formula: [(FwdU((Init * !(!(E(TRUE U !(!(((KdStarGStarP3kStarP3<=GStarPgP3)&&(GStarPgP3>=2)))))))),TRUE) * ((GStarP3kP3<=KdStarGP3)||(DAGE<=Enz)))] = FALSE
(forward)formula 4,0,900.57,4589020,1,0,90,2.58583e+07,20,58,1217,2.23288e+07,39
FORMULA Angiogenesis-PT-10-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF(((((KdStarG>=2)||(Pg<=GStarP3kP3))&&((GStarPgP3<=Pip2)&&(Pip2<=KdStarG))) * EF((KdStarG<=Gab1))))
=> equivalent forward existential formula: [(FwdU((FwdU(Init,TRUE) * (((KdStarG>=2)||(Pg<=GStarP3kP3))&&((GStarPgP3<=Pip2)&&(Pip2<=KdStarG)))),TRUE) * (KdStarG<=Gab1))] != FALSE
(forward)formula 5,1,1258.13,5469924,1,0,90,3.26353e+07,13,58,984,2.74939e+07,2
FORMULA Angiogenesis-PT-10-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (E(((KdStarGStarP3<=KdStarGStarP3kStarP2)||(KdStarGStarP3kStar>=2)) U (Pip3>=2)) + (EG((KdStarGStarPgStar>=2)) + (KdStarGStarP3k>=1)))
=> equivalent forward existential formula: ([(FwdU(Init,((KdStarGStarP3<=KdStarGStarP3kStarP2)||(KdStarGStarP3kStar>=2))) * (Pip3>=2))] != FALSE + ([FwdG(Init,(KdStarGStarPgStar>=2))] != FALSE + [(Init * (KdStarGStarP3k>=1))] != FALSE))
Hit Full ! (commute/partial/dont) 51/0/13
(forward)formula 6,1,2179.52,9365080,1,0,90,4.84266e+07,21,58,1060,5.73683e+07,6
FORMULA Angiogenesis-PT-10-CTLCardinality-06 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (!((EF((KdStarGStarP3kStar>=1)) * (((KdStarGStarPgStar>=2)||(PtP2>=1))||((P3k<=GStarP3kP3)||(AktStar>=1))))) * AG((((Pten>=3)||(Pip2>=3))||((GStarP3>=1)||(KdStarGStarP3kStarP2<=KdStarGStarPgStarP2)))))
=> equivalent forward existential formula: ([(FwdU((Init * (((KdStarGStarPgStar>=2)||(PtP2>=1))||((P3k<=GStarP3kP3)||(AktStar>=1)))),TRUE) * (KdStarGStarP3kStar>=1))] = FALSE * [(FwdU(Init,TRUE) * !((((Pten>=3)||(Pip2>=3))||((GStarP3>=1)||(KdStarGStarP3kStarP2<=KdStarGStarPgStarP2)))))] = FALSE)
(forward)formula 7,0,2181.5,9382768,1,0,90,4.8493e+07,23,58,1094,5.74582e+07,7
FORMULA Angiogenesis-PT-10-CTLCardinality-07 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((KdStarGStarP3kP3<=KdStarG) * AG(((!(KdStarGStarP3kStarP3P2>=1))||(AktStar>=3))))
=> equivalent forward existential formula: ([(Init * !((KdStarGStarP3kP3<=KdStarG)))] = FALSE * [(FwdU(Init,TRUE) * !(((!(KdStarGStarP3kStarP3P2>=1))||(AktStar>=3))))] = FALSE)
(forward)formula 8,0,2184.7,9399928,1,0,90,4.86376e+07,25,58,1100,5.76834e+07,8
FORMULA Angiogenesis-PT-10-CTLCardinality-08 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(!(((!(KdStarGStarP3k<=KdStarGStarPg))&&(KdStarGStarP3kStarP3P2>=3))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * ((!(KdStarGStarP3k<=KdStarGStarPg))&&(KdStarGStarP3kStarP3P2>=3)))] = FALSE
(forward)formula 9,0,2186.18,9419464,1,0,90,4.86757e+07,26,58,1125,5.77025e+07,9
FORMULA Angiogenesis-PT-10-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (EF(EG((GStarPgP3>=3))) * (KdStarGStar<=Pg))
=> equivalent forward existential formula: [FwdG(FwdU((Init * (KdStarGStar<=Pg)),TRUE),(GStarPgP3>=3))] != FALSE
Hit Full ! (commute/partial/dont) 60/0/4
(forward)formula 10,1,2525.59,9439024,1,0,90,4.87577e+07,24,58,1434,5.78271e+07,10
FORMULA Angiogenesis-PT-10-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: !(EF((((GStarPgP3>=3)||(GStarPgP3>=1))&&((KdStarG<=GStarP3)||(Gab1<=PtP3P2)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (((GStarPgP3>=3)||(GStarPgP3>=1))&&((KdStarG<=GStarP3)||(Gab1<=PtP3P2))))] = FALSE
(forward)formula 11,0,2527.75,9439024,1,0,90,4.87577e+07,25,58,1480,5.78271e+07,11
FORMULA Angiogenesis-PT-10-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(AX((DAGE<=Gab1)))
=> equivalent forward existential formula: [(EY(FwdU(Init,TRUE)) * !((DAGE<=Gab1)))] = FALSE
(forward)formula 12,0,2531.78,9439024,1,0,90,4.87577e+07,27,58,1502,5.78271e+07,13
FORMULA Angiogenesis-PT-10-CTLCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 20, 2018 5:07:25 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
May 20, 2018 5:07:25 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 20, 2018 5:07:26 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 67 ms
May 20, 2018 5:07:26 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 20, 2018 5:07:26 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 20, 2018 5:07:26 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 15 ms
May 20, 2018 5:07:26 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 108 ms
May 20, 2018 5:07:26 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 4 ms
May 20, 2018 5:07:26 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 3 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-10"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-10.tgz
mv Angiogenesis-PT-10 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-10, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r020-qhx1-152646244300017"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;