Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
...........................
/home/mcc/execution
total 204K
-rw-r--r-- 1 mcc users 3.1K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 2.0K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 11K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.4K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 14K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is Angiogenesis-PT-05, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r020-qhx1-152646244300010
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-05-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1526835930843

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,4.27349e+07,1.84328,37840,2,12182,5,180021,6,0,220,174759,0


Converting to forward existential form...Done !
original formula: AG(((GStarP3<=KdStarGStarP3kStarP2)||(KdStarPgStar>=3)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((GStarP3<=KdStarGStarP3kStarP2)||(KdStarPgStar>=3))))] = FALSE
(forward)formula 0,0,1.89897,37840,1,0,8,180021,9,2,250,174759,1
FORMULA Angiogenesis-PT-05-CTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (EF(EX((KdStarGStarP3kStarP3P2>=2))) * !((KdStarGStarP3>=2)))
=> equivalent forward existential formula: [(EY(FwdU((Init * !((KdStarGStarP3>=2))),TRUE)) * (KdStarGStarP3kStarP3P2>=2))] != FALSE
(forward)formula 1,1,3.19233,42972,1,0,10,200459,13,3,573,211962,6
FORMULA Angiogenesis-PT-05-CTLCardinality-01 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EX(E((Gab1>=3) U (KdStarGP3>=3)))
=> equivalent forward existential formula: [(FwdU(EY(Init),(Gab1>=3)) * (KdStarGP3>=3))] != FALSE
Hit Full ! (commute/partial/dont) 60/0/4
(forward)formula 2,0,3.77487,54324,1,0,15,261748,21,4,611,262984,11
FORMULA Angiogenesis-PT-05-CTLCardinality-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG(((KdStarGStar<=KdStarGStarPg)||(KdStarGStarP3<=KdStarGStarP3kP3)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((KdStarGStar<=KdStarGStarPg)||(KdStarGStarP3<=KdStarGStarP3kP3))))] = FALSE
(forward)formula 3,0,3.85827,55748,1,0,18,268886,23,6,640,272542,12
FORMULA Angiogenesis-PT-05-CTLCardinality-03 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: !(EF(!(((KdStarGStarP3kStarP2<=KdStarG)||(P3k>=1)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((KdStarGStarP3kStarP2<=KdStarG)||(P3k>=1))))] = FALSE
(forward)formula 4,0,3.94853,57332,1,0,21,272999,25,8,657,282171,13
FORMULA Angiogenesis-PT-05-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AF(AG(((Pip3<=Enz)||(P3k<=Pg))))
=> equivalent forward existential formula: [FwdG(Init,!(!(E(TRUE U !(((Pip3<=Enz)||(P3k<=Pg)))))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions k2, k55, k60, k7, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :0/60/4/64
(forward)formula 5,1,10.0244,136804,1,0,91,597662,172,58,1741,544822,146
FORMULA Angiogenesis-PT-05-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(E((KdStarPg>=3) U (KdStarGStarP3kP3<=KdStarGStarPgStarP2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(E((KdStarPg>=3) U (KdStarGStarP3kP3<=KdStarGStarPgStarP2))))] = FALSE
(forward)formula 6,0,11.5126,152644,1,0,106,747422,177,69,1774,685699,167
FORMULA Angiogenesis-PT-05-CTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EF((GStarP3>=1))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * (GStarP3>=1))] != FALSE
(forward)formula 7,1,11.5139,152908,1,0,107,747427,178,70,1774,685699,168
FORMULA Angiogenesis-PT-05-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (EF((AktStar>=2)) + AF((KdStarGStarP3k>=3)))
=> equivalent forward existential formula: [FwdG((Init * !(E(TRUE U (AktStar>=2)))),!((KdStarGStarP3k>=3)))] = FALSE
(forward)formula 8,1,20.0356,253980,1,0,116,1.40872e+06,188,76,1816,1.11143e+06,180
FORMULA Angiogenesis-PT-05-CTLCardinality-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (EF(!((GStarP3<=Akt))) * AF(AX((Pg>=3))))
=> equivalent forward existential formula: ([(Init * !(E(TRUE U !((GStarP3<=Akt)))))] = FALSE * [FwdG(Init,!(!(EX(!((Pg>=3))))))] = FALSE)
(forward)formula 9,1,29.7363,370156,1,0,124,2.17078e+06,195,83,1830,1.61405e+06,195
FORMULA Angiogenesis-PT-05-CTLCardinality-09 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((KdStarGStarPgStar<=KdStar) * EF(AG((P3k<=KdStarGStarPgStarP3))))
=> equivalent forward existential formula: [(FwdU((Init * (KdStarGStarPgStar<=KdStar)),TRUE) * !(E(TRUE U !((P3k<=KdStarGStarPgStarP3)))))] != FALSE
(forward)formula 10,1,30.127,375436,1,0,127,2.19743e+06,198,87,1844,1.6327e+06,206
FORMULA Angiogenesis-PT-05-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: EX(!(EF((AktP3>=3))))
=> equivalent forward existential formula: [(EY(Init) * !(E(TRUE U (AktP3>=3))))] != FALSE
(forward)formula 11,0,48.3154,555220,1,0,138,3.42807e+06,199,94,1845,2.42045e+06,223
FORMULA Angiogenesis-PT-05-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: E((AktStar<=Akt) U ((Pip3>=3)&&((KdStarGStarPgP3<=P3k)||(KdStarPg>=1))))
=> equivalent forward existential formula: [(FwdU(Init,(AktStar<=Akt)) * ((Pip3>=3)&&((KdStarGStarPgP3<=P3k)||(KdStarPg>=1))))] != FALSE
Hit Full ! (commute/partial/dont) 61/0/3
(forward)formula 12,1,50.1697,582676,1,0,143,3.57132e+06,207,95,1904,2.5593e+06,227
FORMULA Angiogenesis-PT-05-CTLCardinality-12 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AG(((KdStar>=3)||(KdStar>=2)))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !(((KdStar>=3)||(KdStar>=2))))] = FALSE
(forward)formula 13,0,50.193,583204,1,0,146,3.57361e+06,209,97,1910,2.56317e+06,228
FORMULA Angiogenesis-PT-05-CTLCardinality-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: AG((((KdStarGStarP3kStarP3P2<=KdStarGStarP3k)||((KdStarGStarPgStar>=2)||(KdStarGStarPgStar>=1)))||(!((KdStarGP3>=1)||(GStarP3<=KdStarGStarP3kP3)))))
=> equivalent forward existential formula: [(FwdU(Init,TRUE) * !((((KdStarGStarP3kStarP3P2<=KdStarGStarP3k)||((KdStarGStarPgStar>=2)||(KdStarGStarPgStar>=1)))||(!((KdStarGP3>=1)||(GStarP3<=KdStarGStarP3kP3))))))] = FALSE
(forward)formula 14,0,50.3803,585844,1,0,149,3.58675e+06,211,99,1947,2.5818e+06,229
FORMULA Angiogenesis-PT-05-CTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarGStarP3kStarP3P2<=KdStarGP3)
=> equivalent forward existential formula: [(Init * (KdStarGStarP3kStarP3P2<=KdStarGP3))] != FALSE
(forward)formula 15,1,50.3826,586108,1,0,149,3.58675e+06,212,99,1949,2.5818e+06,230
FORMULA Angiogenesis-PT-05-CTLCardinality-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************


BK_STOP 1526836004225

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 20, 2018 5:05:51 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
May 20, 2018 5:05:51 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 20, 2018 5:05:51 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 61 ms
May 20, 2018 5:05:51 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 20, 2018 5:05:51 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 20, 2018 5:05:51 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 14 ms
May 20, 2018 5:05:52 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 93 ms
May 20, 2018 5:05:52 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 13 ms
May 20, 2018 5:05:52 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 2 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-05"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-05.tgz
mv Angiogenesis-PT-05 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-05, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r020-qhx1-152646244300010"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;