Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
....................................................................................................................................
/home/mcc/execution
total 212K
-rw-r--r-- 1 mcc users 4.2K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 20K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 9.8K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 8.6K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.7K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 23K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 13K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool itstools
Input is Angiogenesis-PT-01, examination is CTLCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r020-qhx1-152646244300003
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-00
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-01
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-02
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-03
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-04
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-05
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-06
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-07
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-08
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-09
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-10
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-11
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-12
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-13
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-14
FORMULA_NAME Angiogenesis-PT-01-CTLCardinality-15

=== Now, execution of the tool begins

BK_START 1526835883432

Invoking ITS tools like this :CommandLine [args=[/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/CTLCardinality.pnml.gal, -t, CGAL, -ctl, /home/mcc/execution/CTLCardinality.ctl], workingDir=/home/mcc/execution]

its-ctl command run as :

/home/mcc/BenchKit/itstools/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201805151631/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/CTLCardinality.pnml.gal -t CGAL -ctl /home/mcc/execution/CTLCardinality.ctl
No direction supplied, using forward translation only.
Parsed 16 CTL formulae.
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
reachable,110,0.044953,4660,2,284,5,1209,6,0,220,974,0


Converting to forward existential form...Done !
original formula: !(A(!((GStarP3kP3<=Pip2)) U ((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2))))
=> equivalent forward existential formula: ([(FwdU(Init,!(((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2)))) * (!(!((GStarP3kP3<=Pip2))) * !(((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2)))))] != FALSE + [FwdG(Init,!(((KdStarPgStarP2<=P3k)||(KdStarGStarP3kStar<=KdStarGStarP3kStarP2))))] != FALSE)
(forward)formula 0,0,0.074001,6144,1,0,7,5426,22,1,995,1874,5
FORMULA Angiogenesis-PT-01-CTLCardinality-00 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarGStar>=3)
=> equivalent forward existential formula: [(Init * (KdStarGStar>=3))] != FALSE
(forward)formula 1,0,0.074673,6144,1,0,7,5426,23,1,996,1874,5
FORMULA Angiogenesis-PT-01-CTLCardinality-01 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (!((EG((Akt<=Pten)) + !((KdStarG<=KdStarGStarP3kStarP2)))) + AG((((GP3<=GStarPgP3)||(Gab1>=3))&&((Pg>=3)||(KdStarGStarPgP3>=2)))))
=> equivalent forward existential formula: [(FwdU((Init * !(!((EG((Akt<=Pten)) + !((KdStarG<=KdStarGStarP3kStarP2)))))),TRUE) * !((((GP3<=GStarPgP3)||(Gab1>=3))&&((Pg>=3)||(KdStarGStarPgP3>=2)))))] = FALSE
Reverse transition relation is NOT exact ! Due to transitions k2, k55, Intersection with reachable at each step enabled. (destroyed/reverse/intersect/total) :14/48/2/64
(forward)formula 2,0,0.154196,8256,1,0,130,18822,153,79,1453,10777,244
FORMULA Angiogenesis-PT-01-CTLCardinality-02 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: EX(((!((KdStarGStarPgStarP3P2>=2)||(KdStarPgStar<=Gab1)))||((!(GStarP3>=3))||((GStarPgP3<=KdStarGStarPgP3)||(KdStarGStarPgStarP3>=1)))))
=> equivalent forward existential formula: [(EY(Init) * ((!((KdStarGStarPgStarP3P2>=2)||(KdStarPgStar<=Gab1)))||((!(GStarP3>=3))||((GStarPgP3<=KdStarGStarPgP3)||(KdStarGStarPgStarP3>=1)))))] != FALSE
(forward)formula 3,1,0.157211,8520,1,0,132,18847,154,80,1468,10831,246
FORMULA Angiogenesis-PT-01-CTLCardinality-03 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((Pg<=Pten) * AG(EX((DAG>=1))))
=> equivalent forward existential formula: ([(Init * !((Pg<=Pten)))] = FALSE * [(FwdU(Init,TRUE) * !(EX((DAG>=1))))] = FALSE)
(forward)formula 4,0,0.159342,8784,1,0,136,19102,155,84,1468,11048,251
FORMULA Angiogenesis-PT-01-CTLCardinality-04 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((!((!(KdStarGStarPgP3>=1))&&((KdStarGStarPgStarP3>=1)||(KdStarPgStarP2>=1))))||(GStarPgP3<=KdStarGP3)) + (!(EF((KdStarPg<=Pip2))) * (!((GP3>=3)) + AF((KdStarGStarP3kP3>=2)))))
=> equivalent forward existential formula: ([(FwdU((Init * !(((!((!(KdStarGStarPgP3>=1))&&((KdStarGStarPgStarP3>=1)||(KdStarPgStarP2>=1))))||(GStarPgP3<=KdStarGP3)))),TRUE) * (KdStarPg<=Pip2))] = FALSE * [FwdG(((Init * !(((!((!(KdStarGStarPgP3>=1))&&((KdStarGStarPgStarP3>=1)||(KdStarPgStarP2>=1))))||(GStarPgP3<=KdStarGP3)))) * !(!((GP3>=3)))),!((KdStarGStarP3kP3>=2)))] = FALSE)
(forward)formula 5,1,0.163608,8784,1,0,138,19108,161,84,1484,11058,255
FORMULA Angiogenesis-PT-01-CTLCardinality-05 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (AG(EX((Pten>=3))) * ((GStarPgP3<=KdStarGStarPgP3) * EG(!((KdStar<=GStarPgP3)))))
=> equivalent forward existential formula: ([(FwdU(Init,TRUE) * !(EX((Pten>=3))))] = FALSE * ([(Init * !((GStarPgP3<=KdStarGStarPgP3)))] = FALSE * [(Init * !(EG(!((KdStar<=GStarPgP3)))))] = FALSE))
(forward)formula 6,0,0.166553,8784,1,0,141,19335,170,88,1491,11194,265
FORMULA Angiogenesis-PT-01-CTLCardinality-06 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarGStarPgStarP2<=KdStarGStarPgStarP3)
=> equivalent forward existential formula: [(Init * (KdStarGStarPgStarP2<=KdStarGStarPgStarP3))] != FALSE
(forward)formula 7,1,0.166928,8784,1,0,142,19339,171,88,1493,11197,266
FORMULA Angiogenesis-PT-01-CTLCardinality-07 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: (KdStarGStarP3k<=KdStarGStarP3)
=> equivalent forward existential formula: [(Init * (KdStarGStarP3k<=KdStarGStarP3))] != FALSE
(forward)formula 8,1,0.167493,8784,1,0,142,19339,172,88,1496,11201,267
FORMULA Angiogenesis-PT-01-CTLCardinality-08 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: ((Pten<=AktStar)&&(GStarP3<=P3k))
=> equivalent forward existential formula: [(Init * ((Pten<=AktStar)&&(GStarP3<=P3k)))] != FALSE
(forward)formula 9,0,0.168018,8784,1,0,143,19350,173,88,1502,11201,268
FORMULA Angiogenesis-PT-01-CTLCardinality-09 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((((KdStarGStarP3<=KdStarGStarPgStarP2)&&(KdStarGStarP3kStarP2>=3))||(!(KdStarGStarPgStarP3>=1)))&&(KdStarGStarP3kStarP2<=KdStarGStarPgStar))
=> equivalent forward existential formula: [(Init * ((((KdStarGStarP3<=KdStarGStarPgStarP2)&&(KdStarGStarP3kStarP2>=3))||(!(KdStarGStarPgStarP3>=1)))&&(KdStarGStarP3kStarP2<=KdStarGStarPgStar)))] != FALSE
(forward)formula 10,1,0.169013,8784,1,0,143,19350,174,88,1511,11202,269
FORMULA Angiogenesis-PT-01-CTLCardinality-10 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************

original formula: AF((KdStarGStar>=1))
=> equivalent forward existential formula: [FwdG(Init,!((KdStarGStar>=1)))] = FALSE
Hit Full ! (commute/partial/dont) 57/0/7
(forward)formula 11,0,0.172639,8784,1,0,145,19494,182,90,1540,11452,273
FORMULA Angiogenesis-PT-01-CTLCardinality-11 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((GP3>=1)&&(GStarPgP3<=DAGE)) + (AG(!((GStarP3kP3<=KdStarGStarPgStarP3))) * (EF((KdStarGStarP3>=3)) + !((Pip3>=1)))))
=> equivalent forward existential formula: ([(FwdU((Init * !(((GP3>=1)&&(GStarPgP3<=DAGE)))),TRUE) * (GStarP3kP3<=KdStarGStarPgStarP3))] = FALSE * [(((Init * !(((GP3>=1)&&(GStarPgP3<=DAGE)))) * !(!((Pip3>=1)))) * !(E(TRUE U (KdStarGStarP3>=3))))] = FALSE)
(forward)formula 12,0,0.174936,8784,1,0,146,19503,190,92,1551,11499,277
FORMULA Angiogenesis-PT-01-CTLCardinality-12 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (((AX((KdStarGStarPgP3<=Akt)) * (P3k<=GP3)) * AX(((KdStarPg>=3)&&(KdStarGStarPgP3<=KdStarPg)))) * (PtP2<=KdStarG))
=> equivalent forward existential formula: ((([(EY(Init) * !((KdStarGStarPgP3<=Akt)))] = FALSE * [(Init * !((P3k<=GP3)))] = FALSE) * [(EY(Init) * !(((KdStarPg>=3)&&(KdStarGStarPgP3<=KdStarPg))))] = FALSE) * [(Init * !((PtP2<=KdStarG)))] = FALSE)
(forward)formula 13,0,0.176239,8784,1,0,147,19516,194,92,1564,11530,279
FORMULA Angiogenesis-PT-01-CTLCardinality-13 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: (KdStarPgStar>=3)
=> equivalent forward existential formula: [(Init * (KdStarPgStar>=3))] != FALSE
(forward)formula 14,0,0.176471,8784,1,0,147,19516,195,92,1565,11530,279
FORMULA Angiogenesis-PT-01-CTLCardinality-14 FALSE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is FALSE !

***************************************

original formula: ((Pip3<=KdStar) * (AF(!((Akt<=KdStarGStarPgStarP2))) * (((!(PtP2<=KdStarGStarPgP3))||((KdStarGStarP3kP3<=KdStarGStarPgStar)||(KdStarGStarP3k>=1)))||(Akt>=2))))
=> equivalent forward existential formula: ([(Init * !((Pip3<=KdStar)))] = FALSE * ([FwdG(Init,!(!((Akt<=KdStarGStarPgStarP2))))] = FALSE * [(Init * !((((!(PtP2<=KdStarGStarPgP3))||((KdStarGStarP3kP3<=KdStarGStarPgStar)||(KdStarGStarP3k>=1)))||(Akt>=2))))] = FALSE))
(forward)formula 15,1,0.180129,8784,1,0,149,19725,205,93,1591,11665,282
FORMULA Angiogenesis-PT-01-CTLCardinality-15 TRUE TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL
Formula is TRUE !

***************************************


BK_STOP 1526835905816

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution CTLCardinality -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ [[ -z '' ]]
+ export LTSMIN_MEM_SIZE=8589934592
+ LTSMIN_MEM_SIZE=8589934592
+ /home/mcc/BenchKit//itstools/its-tools -consoleLog -data /home/mcc/execution/workspace -pnfolder /home/mcc/execution -examination CTLCardinality -z3path /home/mcc/BenchKit//z3/bin/z3 -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt -vmargs -Dosgi.locking=none -Declipse.stateSaveDelayInterval=-1 -Dosgi.configuration.area=/tmp/.eclipse -Xss8m -Xms40m -Xmx8192m -Dfile.encoding=UTF-8 -Dosgi.requiredJavaVersion=1.6
May 20, 2018 5:05:03 PM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-pnfolder, /home/mcc/execution, -examination, CTLCardinality, -z3path, /home/mcc/BenchKit//z3/bin/z3, -yices2path, /home/mcc/BenchKit//yices/bin/yices, -its, -ltsminpath, /home/mcc/BenchKit//lts_install_dir/, -smt]
May 20, 2018 5:05:03 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 20, 2018 5:05:03 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 57 ms
May 20, 2018 5:05:03 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 20, 2018 5:05:03 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 20, 2018 5:05:03 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/model.pnml.img.gal : 13 ms
May 20, 2018 5:05:04 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 90 ms
May 20, 2018 5:05:04 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/CTLCardinality.pnml.gal : 4 ms
May 20, 2018 5:05:04 PM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSCTLTools
INFO: Time to serialize properties into /home/mcc/execution/CTLCardinality.ctl : 3 ms

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-01"
export BK_EXAMINATION="CTLCardinality"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-01.tgz
mv Angiogenesis-PT-01 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-01, examination is CTLCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r020-qhx1-152646244300003"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;