Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.............................
/home/mcc/execution
total 212K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.4K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is Angiogenesis-PT-20, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-qhx1-152646243500033
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-00
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-01
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-02
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-03
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-04
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-05
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-06
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-07
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-08
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-09
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-20-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1526800154820


BK_STOP 1526800209514

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-20 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool bmdt.
Model characteristics are: {'Examination': 'ReachabilityCardinality', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 235, 'Memory': 111, 'Tool': 'lola'}, {'Time': 348, 'Memory': 109.4, 'Tool': 'lola'}, {'Time': 2145374, 'Memory': 7240.87, 'Tool': 'itstools'}, {'Time': 2224589, 'Memory': 7237.48, 'Tool': 'itstools'}].
Learned tools are: [{'Tool': 'lola'}].
Learned tool lola is 1.0x far from the best tool lola.
ReachabilityCardinality lola Angiogenesis-PT-20...

Time: 3600 - MCC
----- Start make prepare stdout -----
----- Start make prepare stderr -----
===========================================================================================
Angiogenesis-PT-20: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
Angiogenesis-PT-20: translating PT formula ReachabilityCardinality into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
----- Start make result stderr -----
ReachabilityCardinality @ Angiogenesis-PT-20 @ 3538 seconds
----- Start make result stdout -----
----- Start make result stderr -----
lola: LoLA will run for 3538 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-20-ReachabilityCardinality.task
lola: A (G ((KdStarGStarPgStar <= KdStar))) : E (F ((3 <= KdStarGStarPgStarP3))) : E (F ((((KdStarG <= Pten) AND (1 <= GStarP3kP3) AND (KdStarGStarPg + 1 <= DAGE)) OR ((Enz <= 2) AND (KdStarPgStar <= KdStarGStarP3))))) : A (G (((2 <= Enz) OR ((KdStarGStarP3kStar <= KdStarGStarPgStar) AND ((KdStarGStarPgStarP2 <= Gab1) OR (3 <= AktP3)))))) : A (G (((3 <= Pip2) AND ((KdStarPgStar <= Pten) OR (2 <= GP3) OR (3 <= Akt))))) : E (F ((Pip2 <= KdStarPgStar))) : E (F ((((1 <= KdStarGStarP3kStarP2) AND (3 <= KdStarGStarP3k) AND (KdStarGStarPgStarP2 + 1 <= KdStarPg)) OR (KdStar <= 1)))) : E (F (((AktP3 + 1 <= KdStarGStarPgStar) AND (KdStarGStarPg + 1 <= KdStarGStarPgP3) AND (KdStarGStarPgStarP3 + 1 <= KdStarGStarP3kStar)))) : E (F ((3 <= GStarPgP3))) : E (F ((((KdStarGStar + 1 <= DAG) OR (KdStarGStarPg + 1 <= KdStarGStarPgStarP2)) AND (3 <= AktStar)))) : A (G ((KdStarGStarP3kP3 <= KdStarGStarP3kStar))) : A (G (((1 <= KdStar) OR (1 <= KdStarGP3) OR (1 <= Enz) OR (DAGE <= KdStarGStarP3kStarP2) OR (2 <= KdStarGStarP3k)))) : A (G (((KdStarGStarPgP3 <= KdStarGStarPgStarP2) OR (KdStarGStar <= 1) OR (Enz <= Pten) OR (1 <= KdStarGStarPgStarP2) OR (P3k <= GStarPgP3)))) : E (F (((((GStarPgP3 <= KdStarGStarP3kStarP2) AND (Akt <= GStarP3kP3)) OR (Pg + 1 <= KdStarGStarP3kStar)) AND (KdStarG <= KdStarGP3)))) : A (G (((KdStarGStarPgP3 <= 1) OR (Pten <= 2) OR (KdStarGStarP3kP3 <= KdStarPgStarP2)))) : E (F (((P3k <= 2) AND ((2 <= Akt) OR (GStarP3kP3 <= Pip3)) AND (KdStarGStar + 1 <= Gab1) AND (Pten + 1 <= Pip2))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((KdStarGStarPgStar <= KdStar)))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 62 markings, 82 edges
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality.sara
lola: lola: ========================================state equation: calling and running sara

lola: subprocess 1 will run for 235 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((3 <= KdStarGStarPgStarP3)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 877 markings, 1418 edges
lola: ========================================
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality.sara.
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((((KdStarG <= Pten) AND (1 <= GStarP3kP3) AND (KdStarGStarPg + 1 <= DAGE)) OR ((Enz <= 2) AND (KdStarPgStar <= KdStarGStarP3)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-2.sara
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-2.sara.
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 74 markings, 107 edges
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((2 <= Enz) OR ((KdStarGStarP3kStar <= KdStarGStarPgStar) AND ((KdStarGStarPgStarP2 <= Gab1) OR (3 <= AktP3))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 120 markings, 175 edges
lola: state equation: Generated DNF with 5 literals and 2 conjunctive subformulas
lola: ========================================

lola: subprocess 4 will run for 294 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((3 <= Pip2) AND ((KdStarPgStar <= Pten) OR (2 <= GP3) OR (3 <= Akt)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 4 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 19 markings, 18 edges
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-4.sara
lola: ========================================
lola: subprocess 5 will run for 321 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((Pip2 <= KdStarPgStar)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-5.sara
lola: The predicate is reachable.
lola: 21 markings, 20 edges
lola: ========================================
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-5.sara.
lola: subprocess 6 will run for 353 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((((1 <= KdStarGStarP3kStarP2) AND (3 <= KdStarGStarP3k) AND (KdStarGStarPgStarP2 + 1 <= KdStarPg)) OR (KdStar <= 1))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 4 literals and 2 conjunctive subformulas

lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-6.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 20 markings, 19 edges
lola: ========================================
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-6.sara.
lola: subprocess 7 will run for 393 seconds at most (--localtimelimit=-1)

lola: ========================================
lola: ...considering subproblem: E (F (((AktP3 + 1 <= KdStarGStarPgStar) AND (KdStarGStarPg + 1 <= KdStarGStarPgP3) AND (KdStarGStarPgStarP3 + 1 <= KdStarGStarP3kStar))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 3 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-7.sara
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-7.sara.
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 3006 markings, 4733 edges
lola: ========================================
lola: subprocess 8 will run for 442 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((3 <= GStarPgP3)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-8.sara
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-8.sara.

lola: state equation: solution produced
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 9 will run for 505 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((((KdStarGStar + 1 <= DAG) OR (KdStarGStarPg + 1 <= KdStarGStarPgStarP2)) AND (3 <= AktStar))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 4 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 74 markings, 95 edges
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-9.sara
lola: ========================================
lola: subprocess 10 will run for 589 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((KdStarGStarP3kP3 <= KdStarGStarP3kStar)))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 69 markings, 90 edges
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-10.sara
lola: ========================================
lola: subprocess 11 will run for 707 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((1 <= KdStar) OR (1 <= KdStarGP3) OR (1 <= Enz) OR (DAGE <= KdStarGStarP3kStarP2) OR (2 <= KdStarGStarP3k))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-11.sara
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-11.sara.

lola: state equation: solution produced
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 12 will run for 884 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((KdStarGStarPgP3 <= KdStarGStarPgStarP2) OR (KdStarGStar <= 1) OR (Enz <= Pten) OR (1 <= KdStarGStarPgStarP2) OR (P3k <= GStarPgP3))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 5 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-12.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: lola: state equation: calling and running saraThe predicate is not invariant.

lola: 150 markings, 233 edges
lola: ========================================
lola: subprocess 13 will run for 1179 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((((GStarPgP3 <= KdStarGStarP3kStarP2) AND (Akt <= GStarP3kP3)) OR (Pg + 1 <= KdStarGStarP3kStar)) AND (KdStarG <= KdStarGP3))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
sara: lola: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-12.sara.
state equation: Generated DNF with 5 literals and 2 conjunctive subformulas
lola: produced by: state space
lola: The predicate is reachable.
lola: 158 markings, 206 edges
lola: subprocess 14 will run for 1768 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((KdStarGStarPgP3 <= 1) OR (Pten <= 2) OR (KdStarGStarP3kP3 <= KdStarPgStarP2))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: ========================================
lola: state equation: Generated DNF with 3 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-14.sara

lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-14.sara.

lola: state equation: solution produced
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 15 will run for 3537 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((P3k <= 2) AND ((2 <= Akt) OR (GStarP3kP3 <= Pip3)) AND (KdStarGStar + 1 <= Gab1) AND (Pten + 1 <= Pip2))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 124 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-20-ReachabilityCardinality-15.sara
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-20-ReachabilityCardinality-15.sara.

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: RESULT
lola:
SUMMARY: no yes yes no no yes yes yes yes yes no no no yes no no
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-0 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-2 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-3 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-4 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-6 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-7 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-11 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-13 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-14 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA Angiogenesis-PT-20-ReachabilityCardinality-15 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stderr -----
----- Kill lola and sara stdout -----
----- Finished stdout -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is Angiogenesis-PT-20, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-qhx1-152646243500033"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;