Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.................................................................................................................................................................................................................................
/home/mcc/execution
total 212K
-rw-r--r-- 1 mcc users 4.0K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 21K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.7K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.9K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 9.4K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.1K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 19K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.7K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool irma4mcc-structural
Input is Angiogenesis-PT-20, examination is UpperBounds
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r019-qhx1-152646243500030
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of positive values
NUM_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-00
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-01
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-02
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-03
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-04
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-05
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-06
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-07
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-08
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-09
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-10
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-11
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-12
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-13
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-14
FORMULA_NAME Angiogenesis-PT-20-UpperBounds-15

=== Now, execution of the tool begins

BK_START 1526799557477


BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

Prefix is 75f5f979.
Reading known information in /usr/share/mcc4mcc/75f5f979-known.json.
Reading learned information in /usr/share/mcc4mcc/75f5f979-learned.json.
Reading value translations in /usr/share/mcc4mcc/75f5f979-values.json.
Using directory /home/mcc/execution for input, as it contains a model.pnml file.
Using Angiogenesis-PT-20 as instance name.
Using Angiogenesis as model name.
Using algorithm or tool random-forest.
Model characteristics are: {'Examination': 'UpperBounds', 'Place/Transition': True, 'Colored': False, 'Relative-Time': 1, 'Relative-Memory': 1, 'Ordinary': True, 'Simple Free Choice': False, 'Extended Free Choice': False, 'State Machine': False, 'Marked Graph': False, 'Connected': True, 'Strongly Connected': False, 'Source Place': False, 'Sink Place': True, 'Source Transition': False, 'Sink Transition': False, 'Loop Free': True, 'Conservative': False, 'Sub-Conservative': False, 'Nested Units': False, 'Safe': None, 'Deadlock': True, 'Reversible': False, 'Quasi Live': False, 'Live': False}.
Known tools are: [{'Time': 2085091, 'Memory': 7085.16, 'Tool': 'itstools'}, {'Time': 2238749, 'Memory': 7086, 'Tool': 'itstools'}, {'Time': 3540136, 'Memory': 12940.69, 'Tool': 'lola'}, {'Time': 3540226, 'Memory': 13132.48, 'Tool': 'lola'}].
Learned tools are: [{'Tool': 'gspn'}].
UpperBounds itstools Angiogenesis-PT-20...
May 20, 2018 6:59:37 AM fr.lip6.move.gal.application.Application start
INFO: Running its-tools with arguments : [-z3path, /usr/bin/z3, -yices2path, /usr/bin/yices, -ltsminpath, /usr/bin, -smt, -its, -pnfolder, /mcc-data, -examination, UpperBounds]
May 20, 2018 6:59:37 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /mcc-data/model.pnml
May 20, 2018 6:59:38 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 88 ms
May 20, 2018 6:59:38 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 20, 2018 6:59:38 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 20, 2018 6:59:38 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /mcc-data/model.pnml.img.gal : 18 ms
May 20, 2018 6:59:38 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 135 ms
May 20, 2018 6:59:38 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /mcc-data/UpperBounds.pnml.gal : 9 ms
Invoking ITS tools like this :CommandLine [args=[/usr/share/itscl/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201804131302/bin/its-reach-linux64, --gc-threshold, 2000000, --quiet, -i, /mcc-data/UpperBounds.pnml.gal, -t, CGAL, -reachable-file, UpperBounds.prop, --nowitness], workingDir=/mcc-data]
May 20, 2018 6:59:39 AM fr.lip6.move.serialization.SerializationUtil serializePropertiesForITSTools
INFO: Time to serialize properties into /mcc-data/UpperBounds.prop : 1 ms

its-reach command run as :

/usr/share/itscl/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201804131302/bin/its-reach-linux64 --gc-threshold 2000000 --quiet -i /mcc-data/UpperBounds.pnml.gal -t CGAL -reachable-file UpperBounds.prop --nowitness
Loading property file UpperBounds.prop.
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-00 with value :KdStarGStarPgStarP3P2
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-01 with value :GP3
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-02 with value :PtP2
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-03 with value :KdStarGStarP3
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-04 with value :KdStarGStarPgP3
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-05 with value :KdStarGStarP3kStar
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-06 with value :Gab1
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-07 with value :Pg
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-08 with value :AktStar
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-09 with value :KdStarGStarPg
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-10 with value :Pip3
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-11 with value :PtP2
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-12 with value :KdStarGStarP3kStar
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-13 with value :GStarP3kP3
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-14 with value :PtP3
Read [bounds] property : Angiogenesis-PT-20-UpperBounds-15 with value :KdStarGStarP3kStarP3P2
Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis\_PT\_20\_flat,3.5182e+17,3536.73,6378204,2,1.95882e+06,5,4.12411e+07,6,0,220,3.80363e+07,0
Total reachable state count : 351820047967344849

Verifying 16 reachability properties.
Min sum of variable value : 0
Maximum sum along a path : 10
Bounds property Angiogenesis-PT-20-UpperBounds-00 :0 <= KdStarGStarPgStarP3P2 <= 10
FORMULA Angiogenesis-PT-20-UpperBounds-00 10 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-20-UpperBounds-00,0,3548.85,6378204,1,0,7,4.12411e+07,9,1,321,3.80363e+07,4
Min sum of variable value : 0
Maximum sum along a path : 19
Bounds property Angiogenesis-PT-20-UpperBounds-01 :0 <= GP3 <= 19
FORMULA Angiogenesis-PT-20-UpperBounds-01 19 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Model ,|S| ,Time ,Mem(kb) ,fin. SDD ,fin. DDD ,peak SDD ,peak DDD ,SDD Hom ,SDD cache peak ,DDD Hom ,DDD cachepeak ,SHom cache
Angiogenesis-PT-20-UpperBounds-01,0,3562.97,6378268,1,0,8,4.12411e+07,10,1,386,3.80363e+07,5
Min sum of variable value : 0
Maximum sum along a path : 20
Bounds property Angiogenesis-PT-20-UpperBounds-02 :0 <= PtP2 <= 20
FORMULA Angiogenesis-PT-20-UpperBounds-02 20 TECHNIQUES DECISION_DIAGRAMS TOPOLOGICAL

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="UpperBounds"
export BK_TOOL="irma4mcc-structural"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool irma4mcc-structural"
echo " Input is Angiogenesis-PT-20, examination is UpperBounds"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r019-qhx1-152646243500030"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "UpperBounds" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "UpperBounds" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "UpperBounds.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property UpperBounds.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "UpperBounds.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' UpperBounds.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;