Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
..........................................................................................
/home/mcc/execution
total 212K
-rw-r--r-- 1 mcc users 4.5K May 15 18:54 CTLCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 CTLCardinality.xml
-rw-r--r-- 1 mcc users 2.4K May 15 18:54 CTLFireability.txt
-rw-r--r-- 1 mcc users 17K May 15 18:54 CTLFireability.xml
-rw-r--r-- 1 mcc users 4.0K May 15 18:49 GenericPropertiesDefinition.xml
-rw-r--r-- 1 mcc users 6.0K May 15 18:49 GenericPropertiesVerdict.xml
-rw-r--r-- 1 mcc users 2.6K May 15 18:54 LTLCardinality.txt
-rw-r--r-- 1 mcc users 12K May 15 18:54 LTLCardinality.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 LTLFireability.txt
-rw-r--r-- 1 mcc users 7.7K May 15 18:54 LTLFireability.xml
-rw-r--r-- 1 mcc users 4.9K May 15 18:54 ReachabilityCardinality.txt
-rw-r--r-- 1 mcc users 24K May 15 18:54 ReachabilityCardinality.xml
-rw-r--r-- 1 mcc users 109 May 15 18:54 ReachabilityDeadlock.txt
-rw-r--r-- 1 mcc users 347 May 15 18:54 ReachabilityDeadlock.xml
-rw-r--r-- 1 mcc users 2.5K May 15 18:54 ReachabilityFireability.txt
-rw-r--r-- 1 mcc users 15K May 15 18:54 ReachabilityFireability.xml
-rw-r--r-- 1 mcc users 1.8K May 15 18:54 UpperBounds.txt
-rw-r--r-- 1 mcc users 3.8K May 15 18:54 UpperBounds.xml
-rw-r--r-- 1 mcc users 6 May 15 18:49 equiv_col
-rw-r--r-- 1 mcc users 3 May 15 18:49 instance
-rw-r--r-- 1 mcc users 6 May 15 18:49 iscolored
-rw-r--r-- 1 mcc users 33K May 15 18:49 model.pnml
=====================================================================
Generated by BenchKit 2-3637
Executing tool lola
Input is Angiogenesis-PT-10, examination is ReachabilityCardinality
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r016-qhx1-152646241000019
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-00
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-01
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-02
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-03
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-04
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-05
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-06
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-07
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-08
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-09
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-10
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-11
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-12
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-13
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-14
FORMULA_NAME Angiogenesis-PT-10-ReachabilityCardinality-15

=== Now, execution of the tool begins

BK_START 1526621216278

info: Time: 3600 - MCC
===========================================================================================
prep: translating Angiogenesis-PT-10 Petri net model.pnml into LoLA format
===========================================================================================
prep: translating PT Petri net complete
prep: check for too many tokens
===========================================================================================
prep: translating Angiogenesis-PT-10 formula ReachabilityCardinality into LoLA format
===========================================================================================
prep: translating PT formula complete
vrfy: Checking ReachabilityCardinality @ Angiogenesis-PT-10 @ 3567 seconds
lola: LoLA will run for 3567 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 103/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: Size of bit vector: 1248
lola: finding significant places
lola: 39 places, 64 transitions, 31 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 54 transition conflict sets
lola: TASK
lola: reading formula from Angiogenesis-PT-10-ReachabilityCardinality.task
lola: LP says that atomic proposition is always true: (KdStarGStarPgStarP2 <= Pten)
lola: LP says that atomic proposition is always true: (KdStarGStarPgStarP3P2 <= Enz)
lola: LP says that atomic proposition is always true: (KdStarGStarP3kStarP3 <= Pten)
lola: always true
lola: LP says that atomic proposition is always true: (GStarPgP3 <= Enz)
lola: E (F ((2 <= PtP3P2))) : A (G ((((PtP2 <= Pg) OR ((1 <= KdStarGStarPgStar) AND (DAGE <= GStarPgP3)))))) : A (G (())) : A (G ((((KdStarGStar + 1 <= KdStarGStarP3) AND (PtP3 <= 1)) OR (KdStarGStarP3kP3 <= KdStarGStarPgP3)))) : E (F (((3 <= KdStarGStarP3) OR ((Akt <= KdStarGStarPg) AND (Pip2 <= KdStarGStarP3kStarP3) AND (PtP3P2 <= 1))))) : E (F (((Pip2 + 1 <= PtP3P2) AND ((Pten <= KdStarGStarP3kStarP3P2) OR (1 <= KdStarPgStarP2)) AND ((KdStarGStarPg <= GStarPgP3) OR (2 <= DAG) OR (KdStarGStarPgP3 <= 1))))) : E (F ((KdStar <= KdStarGStar))) : E (F (((1 <= Pip2) AND (P3k <= KdStarGStarP3k) AND (PtP3P2 + 1 <= KdStarGStarPgStarP3P2) AND (PtP3 <= AktP3)))) : A (G (())) : E (F (((2 <= KdStarGStarP3kP3) AND (2 <= Enz) AND ((2 <= PtP3) OR (3 <= Enz)) AND ((KdStarGStarP3kStarP3P2 <= DAG) OR ((KdStarGStar <= Pten) AND (KdStarGStarP3kP3 <= KdStarGStarP3kStarP2)))))) : E (F ((((PtP3 + 1 <= KdStarGStarPgStarP3) OR (KdStarPgStar + 1 <= KdStarPgStarP2)) AND (1 <= KdStarGStarPgStarP3)))) : E (F (((1 <= KdStarGP3) AND (AktStar <= KdStarPgStarP2) AND (3 <= KdStarGStarP3)))) : A (G (())) : E (F ((((3 <= KdStarPgStarP2) OR (Pg <= KdStarGStarPgP3)) AND (2 <= Pten) AND (Pip3 <= KdStarGStarP3kStarP3P2)))) : E (F (((KdStarGStarP3 <= 0) AND ((3 <= GP3) OR (1 <= KdStarGStarP3kStar)) AND ((KdStarGStarP3kStar + 1 <= PtP3) OR ((3 <= KdStarGP3)))))) : A (G (((3 <= KdStarGStarP3kStar) OR (2 <= KdStar) OR (KdStarGStar + 1 <= P3k) OR (Pip2 <= PtP3))))
lola: rewrite Frontend/Parser/formula_rewrite.k:100
lola: rewrite Frontend/Parser/formula_rewrite.k:160
lola: rewrite Frontend/Parser/formula_rewrite.k:151
lola: rewrite Frontend/Parser/formula_rewrite.k:100
lola: rewrite Frontend/Parser/formula_rewrite.k:160
lola: rewrite Frontend/Parser/formula_rewrite.k:151
lola: rewrite Frontend/Parser/formula_rewrite.k:100
lola: rewrite Frontend/Parser/formula_rewrite.k:160
lola: rewrite Frontend/Parser/formula_rewrite.k:151
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 222 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: TRUE
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 9 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-2 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 1 will run for 237 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: TRUE
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 9 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 2 will run for 254 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: TRUE
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 9 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: 0 markings, 0 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-12 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 3 will run for 274 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((2 <= PtP3P2)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((2 <= PtP3P2)))
lola: processed formula length: 21
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (2 <= PtP3P2)
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-3-0.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 36 markings, 48 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: state equation: calling and running sara
lola: subprocess 4 will run for 297 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((KdStar <= KdStarGStar)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((KdStar <= KdStarGStar)))
lola: processed formula length: 31
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (KdStar <= KdStarGStar)
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 11 markings, 10 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-6 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 5 will run for 324 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((1 <= KdStarGP3) AND (AktStar <= KdStarPgStarP2) AND (3 <= KdStarGStarP3))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((1 <= KdStarGP3) AND (AktStar <= KdStarPgStarP2) AND (3 <= KdStarGStarP3))))
lola: processed formula length: 83
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((1 <= KdStarGP3) AND (AktStar <= KdStarPgStarP2) AND (3 <= KdStarGStarP3))
lola: state equation: Generated DNF with 3 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-5-0.sara
sara: try reading problem file Angiogenesis-PT-10-ReachabilityCardinality-3-0.sara.
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-10-ReachabilityCardinality-5-0.sara.


lola: state equation 0: solution produced
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is reachable.
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-11 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 6 will run for 356 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((((PtP3 + 1 <= KdStarGStarPgStarP3) OR (KdStarPgStar + 1 <= KdStarPgStarP2)) AND (1 <= KdStarGStarPgStarP3))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((((PtP3 + 1 <= KdStarGStarPgStarP3) OR (KdStarPgStar + 1 <= KdStarPgStarP2)) AND (1 <= KdStarGStarPgStarP3))))
lola: processed formula length: 117
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (((PtP3 + 1 <= KdStarGStarPgStarP3) OR (KdStarPgStar + 1 <= KdStarPgStarP2)) AND (1 <= KdStarGStarPgStarP3))
lola: state equation: Generated DNF with 4 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 14 markings, 13 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-10 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 7 will run for 396 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G ((((KdStarGStar + 1 <= KdStarGStarP3) AND (PtP3 <= 1)) OR (KdStarGStarP3kP3 <= KdStarGStarPgP3))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G ((((KdStarGStar + 1 <= KdStarGStarP3) AND (PtP3 <= 1)) OR (KdStarGStarP3kP3 <= KdStarGStarPgP3))))
lola: processed formula length: 104
lola: 11 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: (((KdStarGStarP3 <= KdStarGStar) OR (2 <= PtP3)) AND (KdStarGStarPgP3 + 1 <= KdStarGStarP3kP3))
lola: state equation: Generated DNF with 4 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 12 markings, 11 edges
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-7-0.sara
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-3 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 8 will run for 445 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G ((((PtP2 <= Pg) OR ((1 <= KdStarGStarPgStar) AND (DAGE <= GStarPgP3))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G ((((PtP2 <= Pg) OR ((1 <= KdStarGStarPgStar) AND (DAGE <= GStarPgP3))))))
lola: processed formula length: 79
lola: 11 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: (((Pg + 1 <= PtP2) AND ((KdStarGStarPgStar <= 0) OR (GStarPgP3 + 1 <= DAGE))))
lola: state equation: Generated DNF with 4 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-8-0.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 12 markings, 11 edges
lola: state equation: calling and running sara
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-1 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 9 will run for 509 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((KdStarGStarP3 <= 0) AND ((3 <= GP3) OR (1 <= KdStarGStarP3kStar)) AND ((KdStarGStarP3kStar + 1 <= PtP3) OR ((3 <= KdStarGP3))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((KdStarGStarP3 <= 0) AND ((3 <= GP3) OR (1 <= KdStarGStarP3kStar)) AND ((KdStarGStarP3kStar + 1 <= PtP3) OR ((3 <= KdStarGP3))))))
lola: processed formula length: 139
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((KdStarGStarP3 <= 0) AND ((3 <= GP3) OR (1 <= KdStarGStarP3kStar)) AND ((KdStarGStarP3kStar + 1 <= PtP3) OR ((3 <= KdStarGP3))))
lola: state equation: Generated DNF with 12 literals and 4 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 26 markings, 36 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-14 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
sara: try reading problem file Angiogenesis-PT-10-ReachabilityCardinality-8-0.sara.
lola: subprocess 10 will run for 594 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F ((((3 <= KdStarPgStarP2) OR (Pg <= KdStarGStarPgP3)) AND (2 <= Pten) AND (Pip3 <= KdStarGStarP3kStarP3P2))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F ((((3 <= KdStarPgStarP2) OR (Pg <= KdStarGStarPgP3)) AND (2 <= Pten) AND (Pip3 <= KdStarGStarP3kStarP3P2))))
lola: processed formula length: 114
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: (((3 <= KdStarPgStarP2) OR (Pg <= KdStarGStarPgP3)) AND (2 <= Pten) AND (Pip3 <= KdStarGStarP3kStarP3P2))
lola: state equation: Generated DNF with 6 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 11 markings, 10 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-13 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 11 will run for 713 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((3 <= KdStarGStarP3) OR ((Akt <= KdStarGStarPg) AND (Pip2 <= KdStarGStarP3kStarP3) AND (PtP3P2 <= 1)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((3 <= KdStarGStarP3) OR ((Akt <= KdStarGStarPg) AND (Pip2 <= KdStarGStarP3kStarP3) AND (PtP3P2 <= 1)))))
lola: processed formula length: 112
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((3 <= KdStarGStarP3) OR ((Akt <= KdStarGStarPg) AND (Pip2 <= KdStarGStarP3kStarP3) AND (PtP3P2 <= 1)))
lola: state equation: Generated DNF with 4 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-11-0.sara
lola: state equation: calling and running sara

sara: try reading problem file Angiogenesis-PT-10-ReachabilityCardinality-11-0.sara.
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 41 markings, 49 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-4 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 12 will run for 891 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: A (G (((3 <= KdStarGStarP3kStar) OR (2 <= KdStar) OR (KdStarGStar + 1 <= P3k) OR (Pip2 <= PtP3))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: processed formula: A (G (((3 <= KdStarGStarP3kStar) OR (2 <= KdStar) OR (KdStarGStar + 1 <= P3k) OR (Pip2 <= PtP3))))
lola: processed formula length: 101
lola: 11 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:631
lola: rewrite Frontend/Parser/formula_rewrite.k:694
lola: formula 0: ((KdStarGStarP3kStar <= 2) AND (KdStar <= 1) AND (P3k <= KdStarGStar) AND (PtP3 + 1 <= Pip2))
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-12-0.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: 21 markings, 20 edges
lola:
FORMULA Angiogenesis-PT-10-ReachabilityCardinality-15 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
========================================
lola: subprocess 13 will run for 1188 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((1 <= Pip2) AND (P3k <= KdStarGStarP3k) AND (PtP3P2 + 1 <= KdStarGStarPgStarP3P2) AND (PtP3 <= AktP3))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((1 <= Pip2) AND (P3k <= KdStarGStarP3k) AND (PtP3P2 + 1 <= KdStarGStarPgStarP3P2) AND (PtP3 <= AktP3))))
lola: processed formula length: 111
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((1 <= Pip2) AND (P3k <= KdStarGStarP3k) AND (PtP3P2 + 1 <= KdStarGStarPgStarP3P2) AND (PtP3 <= AktP3))
lola: state equation: Generated DNF with 4 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-13-0.sara
lola: lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 67 markings, 100 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-7 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 14 will run for 1783 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((2 <= KdStarGStarP3kP3) AND (2 <= Enz) AND ((2 <= PtP3) OR (3 <= Enz)) AND ((KdStarGStarP3kStarP3P2 <= DAG) OR ((KdStarGStar <= Pten) AND (KdStarGStarP3kP3 <= KdStarGStarP3kStarP2))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((2 <= KdStarGStarP3kP3) AND (2 <= Enz) AND ((2 <= PtP3) OR (3 <= Enz)) AND ((KdStarGStarP3kStarP3P2 <= DAG) OR ((KdStarGStar <= Pten) AND (KdStarGStarP3kP3 <= KdStarGStarP3kStarP2))))))
lola: processed formula length: 194
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((2 <= KdStarGStarP3kP3) AND (2 <= Enz) AND ((2 <= PtP3) OR (3 <= Enz)) AND ((KdStarGStarP3kStarP3P2 <= DAG) OR ((KdStarGStar <= Pten) AND (KdStarGStarP3kP3 <= KdStarGStarP3kStarP2))))
lola: state equation: Generated DNF with 18 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-14-0.sara
lola: state equation: calling and running sara
sara: try reading problem file Angiogenesis-PT-10-ReachabilityCardinality-14-0.sara.
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 2055 markings, 3427 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: subprocess 15 will run for 3565 seconds at most (--localtimelimit=0)
lola: ========================================
lola: ...considering subproblem: E (F (((Pip2 + 1 <= PtP3P2) AND ((Pten <= KdStarGStarP3kStarP3P2) OR (1 <= KdStarPgStarP2)) AND ((KdStarGStarPg <= GStarPgP3) OR (2 <= DAG) OR (KdStarGStarPgP3 <= 1)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: processed formula: E (F (((Pip2 + 1 <= PtP3P2) AND ((Pten <= KdStarGStarP3kStarP3P2) OR (1 <= KdStarPgStarP2)) AND ((KdStarGStarPg <= GStarPgP3) OR (2 <= DAG) OR (KdStarGStarPgP3 <= 1)))))
lola: processed formula length: 172
lola: 10 rewrites
lola: closed formula file Angiogenesis-PT-10-ReachabilityCardinality.task
lola: STORE
lola: using a simple compression encoder (--encoder=simplecompressed)
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: rewrite Frontend/Parser/formula_rewrite.k:625
lola: formula 0: ((Pip2 + 1 <= PtP3P2) AND ((Pten <= KdStarGStarP3kStarP3P2) OR (1 <= KdStarPgStarP2)) AND ((KdStarGStarPg <= GStarPgP3) OR (2 <= DAG) OR (KdStarGStarPgP3 <= 1)))
lola: state equation: Generated DNF with 18 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to Angiogenesis-PT-10-ReachabilityCardinality-15-0.sara
lola: state equation: calling and running sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: 53 markings, 84 edges
lola: ========================================

FORMULA Angiogenesis-PT-10-ReachabilityCardinality-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT TOPOLOGICAL STATE_COMPRESSION STUBBORN_SETS USE_NUPN UNFOLDING_TO_PT
lola: RESULT
lola:
SUMMARY: yes no yes no yes yes yes yes yes yes yes yes yes yes yes no
lola:
preliminary result: yes no yes no yes yes yes yes yes yes yes yes yes yes yes no
lola: memory consumption: 26320 KB
lola: time consumption: 2 seconds

BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-10"
export BK_EXAMINATION="ReachabilityCardinality"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-10.tgz
mv Angiogenesis-PT-10 execution
cd execution
pwd
ls -lh

# this is for BenchKit: explicit launching of the test
echo "====================================================================="
echo " Generated by BenchKit 2-3637"
echo " Executing tool lola"
echo " Input is Angiogenesis-PT-10, examination is ReachabilityCardinality"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r016-qhx1-152646241000019"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityCardinality" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityCardinality" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityCardinality.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityCardinality.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityCardinality.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityCardinality.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;