Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool itstools
Input is S_MAPK-PT-320, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r120-blw7-149441651900215
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME MAPK-PT-320-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1496432508536


Using solver YICES2 to compute partial order matrices.
Built C files in :
/home/mcc/execution
its-ctl command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 30 rows 22 cols
invariant : 1'ERKPP_Phase3 + 1'ERKP_Phase3 + 1'Phase3= 240
invariant : 1'ERK_MEKPP + 1'ERKP_MEKPP + 1'MEK + 1'MEKPP + -1'Phase2 + 1'MEKP + 1'MEKP_RafP + 1'MEK_RafP= 0
invariant : 1'Phase1 + 1'RafP_Phase1= 240
invariant : 1'Phase2 + 1'MEKP_Phase2 + 1'MEKPP_Phase2= 160
invariant : 1'ERK_MEKPP + 1'ERKP_MEKPP + 1'ERKPP_Phase3 + 1'ERKP_Phase3 + 1'ERKP + 1'ERKPP + 1'ERK= 240
invariant : -1'ERK_MEKPP + -1'ERKP_MEKPP + -1'Phase1 + -1'MEK + -1'MEKPP + 1'Phase2 + -1'MEKP + 1'RafP + 1'Raf_RasGTP + 1'Raf= 80
invariant : 1'Raf_RasGTP + 1'RasGTP= 80
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Exit code :0
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Exit code :0
Exit code :0
FORMULA MAPK-PT-320-ReachabilityDeadlock-0 FALSE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Detected timeout of ITS tools.

BK_STOP 1496432596912

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.201.v20161025-1711.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
Jun 02, 2017 7:41:49 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 02, 2017 7:41:49 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 37 ms
Jun 02, 2017 7:41:49 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 places.
Jun 02, 2017 7:41:49 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 30 transitions.
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.logic.togal.ToGalTransformer toGal
WARNING: Unknown predicate type in boolean expression fr.lip6.move.gal.logic.impl.DeadlockImpl
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property MAPK-PT-320-ReachabilityDeadlock-0 is trivially true : it is verified in initial state.
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 39 ms
Jun 02, 2017 7:41:50 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 6 ms
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 7 place invariants in 8 ms
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 22 variables to be positive in 32 ms
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 30 transitions.
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed :0/30 took 1 ms. Total solver calls (SAT/UNSAT): 3(2/1)
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 44 ms. Total solver calls (SAT/UNSAT): 156(66/90)
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 30 transitions.
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 70 ms. Total solver calls (SAT/UNSAT): 156(76/80)
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 30 transitions.
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished enabling matrix. took 119 ms. Total solver calls (SAT/UNSAT): 465(465/0)
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 30 transitions.
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 309 ms. Total solver calls (SAT/UNSAT): 114(0/114)
Jun 02, 2017 7:41:50 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 703ms conformant to PINS in folder :/home/mcc/execution
Jun 02, 2017 7:43:16 PM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
pins2lts-seq, 0.000: Registering PINS so language module
pins2lts-seq, 0.000: Loading model from ./gal.so
pins2lts-seq, 0.000: library has no initializer
pins2lts-seq, 0.000: loading model GAL
pins2lts-seq, 0.001: completed loading model GAL
pins2lts-seq, 0.001: Initializing POR dependencies: labels 31, guards 30
pins2lts-seq, 0.001: There are 31 state labels and 1 edge labels
pins2lts-seq, 0.001: State length is 22, there are 30 groups
pins2lts-seq, 0.001: Running dfs search strategy
pins2lts-seq, 0.001: Using a tree for state storage
pins2lts-seq, 0.001: Visible groups: 0 / 30, labels: 0 / 31
pins2lts-seq, 0.001: POR cycle proviso: none
pins2lts-seq, 0.031: explored 3512 levels ~10000 states ~23159 transitions
pins2lts-seq, 0.060: explored 3512 levels ~20000 states ~44455 transitions
pins2lts-seq, 0.121: explored 3512 levels ~40000 states ~87266 transitions
pins2lts-seq, 0.275: explored 3512 levels ~80000 states ~172707 transitions
pins2lts-seq, 0.560: explored 5750 levels ~160000 states ~345751 transitions
pins2lts-seq, 1.115: explored 10226 levels ~320000 states ~691642 transitions
pins2lts-seq, 2.217: explored 16940 levels ~640000 states ~1381789 transitions
pins2lts-seq, 4.567: explored 32606 levels ~1280000 states ~2763642 transitions
pins2lts-seq, 9.270: explored 63938 levels ~2560000 states ~5527404 transitions
pins2lts-seq, 18.816: explored 126602 levels ~5120000 states ~11055100 transitions
pins2lts-seq, 38.127: explored 180320 levels ~10240000 states ~22032223 transitions
pins2lts-seq, 79.327: explored 180320 levels ~20480000 states ~43867607 transitions
pins2lts-seq, 85.131: state space 180320 levels, 21962560 states 47028799 transitions

Jun 02, 2017 7:43:16 PM fr.lip6.move.gal.itstools.ProcessController$1 run
WARNING: null
Jun 02, 2017 7:43:16 PM fr.lip6.move.gal.itstools.ProcessController forwardStream
WARNING: Stream closed
Jun 02, 2017 7:43:16 PM fr.lip6.move.gal.itstools.ProcessController forwardStream
WARNING: Stream closed

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_MAPK-PT-320"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_MAPK-PT-320.tgz
mv S_MAPK-PT-320 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool itstools"
echo " Input is S_MAPK-PT-320, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r120-blw7-149441651900215"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;