Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool tapaal
Input is S_GPPP-PT-C0001N0000000100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r109-blw3-149441613600526
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-0
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-1
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-15
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-2
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-3
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-4
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-5
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-6
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-7
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-8
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1495139174368

---> tapaal --- TAPAAL
Total timeout: 3600

*************************************
* TAPAAL verifying CTLFireability *
*************************************
---------------------------------------------------
Step 1: Parallel processing
---------------------------------------------------
Doing parallel verification of individual queries (16 in total)
Each query is verified by 2 parallel strategies for 60 seconds
------------------- QUERY 1 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 1

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 1

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF (AX ((start >= 1) or ((NADPH >= 1) and (GSSG >= 1))) and (EG ((a2 >= 1) and (Ru5P >= 1)) and AG (_3PG >= 1)))
Query after reduction: EF (AX ((start >= 1) or ((NADPH >= 1) and (GSSG >= 1))) and (EG ((a2 >= 1) and (Ru5P >= 1)) and AG (_3PG >= 1)))
Query size reduced from 27 to 27 nodes (0.00 percent reduction).
Query reduction finished after 0.003977 seconds.
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
/home/mcc/BenchKit/start.sh: line 6: 378 Aborted /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 1


------------------- QUERY 2 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 2

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 2

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is satisfied.

STATS:
Time (seconds): 0.000413
Configurations: 190
Markings: 136
Edges: 210
Processed Edges: 220
Processed N. Edges: 3
Explored Configs: 102
Query: (E((!((tokens-count(Lac) ge integer-constant(7) & tokens-count(ATP) ge integer-constant(7))) | ((tokens-count(b1) ge integer-constant(3) & tokens-count(G6P) ge integer-constant(1)) | (tokens-count(R5P) ge integer-constant(1) & tokens-count(Xu5P) ge integer-constant(1))))) U (EX(tokens-count(ADP) ge integer-constant(1) & tokens-count(PEP) ge integer-constant(1))) | (A((tokens-count(b2) ge integer-constant(1) & (tokens-count(G6P) ge integer-constant(1) & tokens-count(NADPplus) ge integer-constant(2)))) U (((tokens-count(ATP) ge integer-constant(1) & tokens-count(F6P) ge integer-constant(1)) | (tokens-count(_1_3_BPG) ge integer-constant(1) & tokens-count(ADP) ge integer-constant(1)))) & ((tokens-count(ATP) ge integer-constant(1) & tokens-count(F6P) ge integer-constant(1)) | !(AX(tokens-count(a2) ge integer-constant(1) & tokens-count(Ru5P) ge integer-constant(1))))))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 2

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 3 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 3

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 3


------------------- QUERY 4 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 4

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 4

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: (AG EX (((Lac >= 7) and (ATP >= 7)) or (GSH >= 2)) or EF ((Lac >= 7) and (ATP >= 7)))
Query after reduction: (AG EX (((Lac >= 7) and (ATP >= 7)) or (GSH >= 2)) or EF ((Lac >= 7) and (ATP >= 7)))
Query size reduced from 22 to 22 nodes (0.00 percent reduction).
Query reduction finished after 0.001751 seconds.


Query is satisfied.

STATS:
Time (seconds): 0.000745
Configurations: 291
Markings: 289
Edges: 380
Processed Edges: 333
Processed N. Edges: 0
Explored Configs: 130
Query: (!(EF!(EX((tokens-count(Lac) ge integer-constant(7) & tokens-count(ATP) ge integer-constant(7)) | tokens-count(GSH) ge integer-constant(2)))) | EF(tokens-count(Lac) ge integer-constant(7) & tokens-count(ATP) ge integer-constant(7)))


Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is satisfied.

STATS:
Time (seconds): 0.00075
Configurations: 291
Markings: 289
Edges: 380
Processed Edges: 333
Processed N. Edges: 0
Explored Configs: 130
Query: (!(EF!(EX((tokens-count(Lac) ge integer-constant(7) & tokens-count(ATP) ge integer-constant(7)) | tokens-count(GSH) ge integer-constant(2)))) | EF(tokens-count(Lac) ge integer-constant(7) & tokens-count(ATP) ge integer-constant(7)))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 4

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-3 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 5 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 5

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 5

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF AG (((_2PG >= 1) and ((R5P >= 1) and (Xu5P >= 1))) and (((ADP >= 1) and (PEP >= 1)) and ((NADPH >= 1) and (GSSG >= 1))))
Query after reduction: false
Query size reduced from 29 to 1 nodes (96.55 percent reduction).
Query reduction finished after 0.229434 seconds.


Query is NOT satisfied.

Query solved by Query Simplification.

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 5

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-4 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 6 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 6

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 6

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 27 places, 16 transitions
Structural reduction finished after 5.1e-05 seconds

Net reduction is enabled.
Removed transitions: 6
Removed places: 6
Applications of rule A: 4
Applications of rule B: 2
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0


Query is satisfied.

STATS:
discovered states: 37
explored states: 35
expanded states: 16
max tokens: 931

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 6

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 7 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 7

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 7

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is NOT satisfied.

STATS:
Time (seconds): 0.3057
Configurations: 75037
Markings: 82392
Edges: 198385
Processed Edges: 236613
Processed N. Edges: 7858
Explored Configs: 71707
Query: !(AF!((E(tokens-count(FBP) ge integer-constant(1)) U ((tokens-count(b1) ge integer-constant(3) & tokens-count(G6P) ge integer-constant(1))) | !(!(!(tokens-count(DHAP) ge integer-constant(1)))))))


Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EG (E ((FBP >= 1) U ((b1 >= 3) and (G6P >= 1))) or (not (not (not (DHAP >= 1)))))
Query after reduction: EG (E ((FBP >= 1) U ((b1 >= 3) and (G6P >= 1))) or (DHAP < 1))
Query size reduced from 16 to 16 nodes (0.00 percent reduction).
Query reduction finished after 0.001064 seconds.


Query is NOT satisfied.

STATS:
Time (seconds): 0.3054
Configurations: 75037
Markings: 82392
Edges: 198385
Processed Edges: 236613
Processed N. Edges: 7858
Explored Configs: 71707
Query: !(AF!((E(tokens-count(FBP) ge integer-constant(1)) U ((tokens-count(b1) ge integer-constant(3) & tokens-count(G6P) ge integer-constant(1))) | tokens-count(DHAP) ls integer-constant(1))))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 7

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-6 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 8 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 8

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 8


------------------- QUERY 9 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 9

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 9


------------------- QUERY 10 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 10

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 10

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: AF E ((((Gluc >= 1) and (ATP >= 1)) and (GSH >= 2)) U (((R5P >= 1) and (Xu5P >= 1)) or (GAP >= 1)))
Query after reduction: AF E ((((Gluc >= 1) and (ATP >= 1)) and (GSH >= 2)) U (((R5P >= 1) and (Xu5P >= 1)) or (GAP >= 1)))
Query size reduced from 24 to 24 nodes (0.00 percent reduction).
Query reduction finished after 0.002096 seconds.


Query is satisfied.

STATS:
Time (seconds): 0.003574
Configurations: 1339
Markings: 879
Edges: 1143
Processed Edges: 1753
Processed N. Edges: 0
Explored Configs: 877
Query: AFE(((tokens-count(Gluc) ge integer-constant(1) & tokens-count(ATP) ge integer-constant(1)) & tokens-count(GSH) ge integer-constant(2))) U (((tokens-count(R5P) ge integer-constant(1) & tokens-count(Xu5P) ge integer-constant(1)) | tokens-count(GAP) ge integer-constant(1)))


Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is satisfied.

STATS:
Time (seconds): 0.003633
Configurations: 1339
Markings: 879
Edges: 1143
Processed Edges: 1753
Processed N. Edges: 0
Explored Configs: 877
Query: AFE(((tokens-count(Gluc) ge integer-constant(1) & tokens-count(ATP) ge integer-constant(1)) & tokens-count(GSH) ge integer-constant(2))) U (((tokens-count(R5P) ge integer-constant(1) & tokens-count(Xu5P) ge integer-constant(1)) | tokens-count(GAP) ge integer-constant(1)))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 10
parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 10

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 11 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 11

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 11

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: AG E ((((ADP >= 1) and (PEP >= 1)) and (GSH >= 2)) U (not ((NADH >= 1) and (Pyr >= 1))))
Query after reduction: AG E ((((ADP >= 1) and (PEP >= 1)) and (GSH >= 2)) U ((NADH < 1) or (Pyr < 1)))
Query size reduced from 20 to 20 nodes (0.00 percent reduction).
Query reduction finished after 0.002157 seconds.


Query is NOT satisfied.

STATS:
Time (seconds): 0.000376
Configurations: 243
Markings: 142
Edges: 312
Processed Edges: 267
Processed N. Edges: 151
Explored Configs: 151
Query: !(EF!(E(((tokens-count(ADP) ge integer-constant(1) & tokens-count(PEP) ge integer-constant(1)) & tokens-count(GSH) ge integer-constant(2))) U ((tokens-count(NADH) ls integer-constant(1) | tokens-count(Pyr) ls integer-constant(1)))))


Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is NOT satisfied.

STATS:
Time (seconds): 0.00037
Configurations: 243
Markings: 142
Edges: 312
Processed Edges: 267
Processed N. Edges: 151
Explored Configs: 151
Query: !(EF!(E(((tokens-count(ADP) ge integer-constant(1) & tokens-count(PEP) ge integer-constant(1)) & tokens-count(GSH) ge integer-constant(2))) U (!((tokens-count(NADH) ge integer-constant(1) & tokens-count(Pyr) ge integer-constant(1))))))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 11
parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 11

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 12 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 12

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 12

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is NOT satisfied.

STATS:
Time (seconds): 0.000728
Configurations: 293
Markings: 289
Edges: 382
Processed Edges: 335
Processed N. Edges: 2
Explored Configs: 132
Query: !(AF(EF(tokens-count(Lac) ge integer-constant(7) & tokens-count(ATP) ge integer-constant(7)) & (((tokens-count(c1) ge integer-constant(7) & (tokens-count(GAP) ge integer-constant(1) & tokens-count(S7P) ge integer-constant(1))) | (tokens-count(NADPH) ge integer-constant(1) & tokens-count(GSSG) ge integer-constant(1))) | !((tokens-count(b1) ge integer-constant(3) & tokens-count(G6P) ge integer-constant(1))))))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 12

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-11 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 13 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 13

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 13


------------------- QUERY 14 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 14

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 14

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is NOT satisfied.

STATS:
Time (seconds): 0.000135
Configurations: 66
Markings: 30
Edges: 70
Processed Edges: 116
Processed N. Edges: 0
Explored Configs: 54
Query: E(AX!((tokens-count(NADPH) ge integer-constant(1) & tokens-count(GSSG) ge integer-constant(1)))) U (EX((tokens-count(NADH) ge integer-constant(1) & tokens-count(Pyr) ge integer-constant(1)) & tokens-count(GSH) ge integer-constant(2)))


Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: E (AX (not ((NADPH >= 1) and (GSSG >= 1))) U EX (((NADH >= 1) and (Pyr >= 1)) and (GSH >= 2)))
Query after reduction: E (AX ((NADPH < 1) or (GSSG < 1)) U EX (((NADH >= 1) and (Pyr >= 1)) and (GSH >= 2)))
Query size reduced from 21 to 21 nodes (0.00 percent reduction).
Query reduction finished after 0.002608 seconds.


Query is NOT satisfied.

STATS:
Time (seconds): 0.000132
Configurations: 66
Markings: 30
Edges: 70
Processed Edges: 116
Processed N. Edges: 0
Explored Configs: 54
Query: E(AX(tokens-count(NADPH) ls integer-constant(1) | tokens-count(GSSG) ls integer-constant(1))) U (EX((tokens-count(NADH) ge integer-constant(1) & tokens-count(Pyr) ge integer-constant(1)) & tokens-count(GSH) ge integer-constant(2)))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 14
parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 14

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-13 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 15 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 15

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 15


------------------- QUERY 16 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 16

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EG ((start >= 1) or AF (FBP >= 1))
Query after reduction: EG ((start >= 1) or AF (FBP >= 1))
Query size reduced from 9 to 9 nodes (0.00 percent reduction).
Query reduction finished after 0.000525 seconds.


Query is NOT satisfied.

STATS:
Time (seconds): 8.5e-05
Configurations: 55
Markings: 48
Edges: 24
Processed Edges: 23
Processed N. Edges: 7
Explored Configs: 22
Query: !(AF!((tokens-count(start) ge integer-constant(1) | AFtokens-count(FBP) ge integer-constant(1))))


Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 16
parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 16

FORMULA GPPP-PT-C0001N0000000100-CTLFireability-15 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
---------------------------------------------------
Step 2: Sequential processing
---------------------------------------------------
Remaining queries are verified sequentially.
Each query is verified for a dynamic timeout (at least 480 seconds)
------------------- QUERY 1 ----------------------
Running query 1 for 539 seconds. Remaining: 6 queries and 3223 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 1

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF (AX ((start >= 1) or ((NADPH >= 1) and (GSSG >= 1))) and (EG ((a2 >= 1) and (Ru5P >= 1)) and AG (_3PG >= 1)))
Query after reduction: EF (AX ((start >= 1) or ((NADPH >= 1) and (GSSG >= 1))) and (EG ((a2 >= 1) and (Ru5P >= 1)) and AG (_3PG >= 1)))
Query size reduced from 27 to 27 nodes (0.00 percent reduction).
Query reduction finished after 0.002092 seconds.
No solution found
------------------- QUERY 3 ----------------------
Running query 3 for 624 seconds. Remaining: 5 queries and 3113 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 3
No solution found
------------------- QUERY 8 ----------------------
Running query 8 for 740 seconds. Remaining: 4 queries and 2952 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 8
No solution found
------------------- QUERY 9 ----------------------
Running query 9 for 930 seconds. Remaining: 3 queries and 2786 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 9
No solution found
------------------- QUERY 13 ----------------------
Running query 13 for 1310 seconds. Remaining: 2 queries and 2616 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 13
No solution found
------------------- QUERY 15 ----------------------
Running query 15 for 2488 seconds. Remaining: 1 queries and 2486 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 15
No solution found
---------------------------------------------------
Step 3: Multiquery processing
---------------------------------------------------
Remaining 6 queries are solved using multiquery
Time remaining: 2345 seconds of the initial 3600 seconds
Running multiquery on -x 1,3,8,9,13,15 for 2345 seconds

Parameters: -s DFS -d 100 -q 100 -p ./model.pnml ./CTLFireability.xml -x 1,3,8,9,13,15

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=DISABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF (AX ((start >= 1) or ((NADPH >= 1) and (GSSG >= 1))) and (EG ((a2 >= 1) and (Ru5P >= 1)) and AG (_3PG >= 1)))
Query after reduction: EF (AX ((start >= 1) or ((NADPH >= 1) and (GSSG >= 1))) and (EG ((a2 >= 1) and (Ru5P >= 1)) and AG (_3PG >= 1)))
Query size reduced from 27 to 27 nodes (0.00 percent reduction).
Query reduction finished after 0.002071 seconds.

Query before reduction: EF AX AX ((R5P >= 1) and (Xu5P >= 1))
Query after reduction: EF AX AX ((R5P >= 1) and (Xu5P >= 1))
Query size reduced from 10 to 10 nodes (0.00 percent reduction).
Query reduction finished after 0.000641 seconds.

Query before reduction: (not AG EF (((_1_3_BPG >= 1) and (ADP >= 1)) and ((b1 >= 3) and (G6P >= 1))))
Query after reduction: EF AG (((_1_3_BPG < 1) or (ADP < 1)) or ((b1 < 3) or (G6P < 1)))
Query size reduced from 17 to 17 nodes (0.00 percent reduction).
Query reduction finished after 0.000649 seconds.

Query before reduction: ((E (((DHAP >= 1) and ((_1_3_BPG >= 1) and (ADP >= 1))) U (not ((ADP >= 1) and (PEP >= 1)))) and (not EF (((_1_3_BPG >= 1) and (ADP >= 1)) and ((a1 >= 2) and (Ru5P >= 1))))) or ((not E ((DHAP >= 1) U ((ATP >= 1) and (F6P >= 1)))) and ((FBP >= 1) or ((NADH >= 1) and (Pyr >= 1)))))
Query after reduction: ((E (((DHAP >= 1) and ((_1_3_BPG >= 1) and (ADP >= 1))) U ((ADP < 1) or (PEP < 1))) and AG (((_1_3_BPG < 1) or (ADP < 1)) or ((a1 < 2) or (Ru5P < 1)))) or ((not E ((DHAP >= 1) U ((ATP >= 1) and (F6P >= 1)))) and ((FBP >= 1) or ((NADH >= 1) and (Pyr >= 1)))))
Query size reduced from 60 to 60 nodes (0.00 percent reduction).
Query reduction finished after 0.004723 seconds.

Query before reduction: EF AG AG ((ADP >= 1) and (PEP >= 1))
Query after reduction: EF AG AG ((ADP >= 1) and (PEP >= 1))
Query size reduced from 10 to 10 nodes (0.00 percent reduction).
Query reduction finished after 0.000993 seconds.

Query before reduction: EF EG AG ((Gluc >= 1) and (ATP >= 1))
Query after reduction: EF EG AG ((Gluc >= 1) and (ATP >= 1))
Query size reduced from 10 to 10 nodes (0.00 percent reduction).
Query reduction finished after 0.000527 seconds.
End of script.

BK_STOP 1495140545087

--------------------
content from stderr:

terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
Command being timed: "timeout 539 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 1"
User time (seconds): 104.94
System time (seconds): 5.30
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 1:50.25
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499204
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3625352
Voluntary context switches: 3
Involuntary context switches: 197
Swaps: 0
File system inputs: 0
File system outputs: 8
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 624 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 3"
User time (seconds): 155.22
System time (seconds): 5.59
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:40.84
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14496416
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3625694
Voluntary context switches: 3
Involuntary context switches: 322
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 740 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 8"
User time (seconds): 160.32
System time (seconds): 5.64
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:46.08
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14492044
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3626661
Voluntary context switches: 3
Involuntary context switches: 463
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 930 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 9"
User time (seconds): 163.84
System time (seconds): 5.80
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:49.75
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14492040
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3626796
Voluntary context switches: 3
Involuntary context switches: 469
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 1310 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 13"
User time (seconds): 124.57
System time (seconds): 5.56
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:10.22
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14496020
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3625596
Voluntary context switches: 3
Involuntary context switches: 360
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 2488 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 15"
User time (seconds): 136.52
System time (seconds): 5.75
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:22.27
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14495432
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3625526
Voluntary context switches: 3
Involuntary context switches: 254
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
Command being timed: "timeout 2345 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 -p ./model.pnml ./CTLFireability.xml -x 1,3,8,9,13,15"
User time (seconds): 108.56
System time (seconds): 5.36
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 1:53.94
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499236
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3625626
Voluntary context switches: 3
Involuntary context switches: 206
Swaps: 0
File system inputs: 0
File system outputs: 8
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_GPPP-PT-C0001N0000000100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="tapaal"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_GPPP-PT-C0001N0000000100.tgz
mv S_GPPP-PT-C0001N0000000100 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool tapaal"
echo " Input is S_GPPP-PT-C0001N0000000100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r109-blw3-149441613600526"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;