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Model Checking Contest @ Petri Nets 2017
7th edition, Zaragoza, Spain, June 27, 2017
Execution of r108-blw3-149441612600558
Last Updated
June 27, 2017

About the Execution of LoLA for S_GPPP-PT-C0100N0000010000

Execution Summary
Max Memory
Used (MB)		 Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
15952.250 621271.00 1095939.00 10095.00 FTTFF?TTTTTTT?TT normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool lola
Input is S_GPPP-PT-C0100N0000010000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r108-blw3-149441612600558
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C0100N0000010000-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1496396917364


Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
S_GPPP-PT-C0100N0000010000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
S_GPPP-PT-C0100N0000010000: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
ReachabilityFireability @ S_GPPP-PT-C0100N0000010000 @ 3540 seconds
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000010000-ReachabilityFireability.task
lola: A (G (((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Phosphofructokinase)) OR (FIREABLE(Transketolase2) AND FIREABLE(Phosphoglucose_isomerase)) OR NOT FIREABLE(Hexokinase) OR NOT FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(TIM_backward) AND FIREABLE(remove) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Ru5P_epimerase)) AND FIREABLE(Aldolase) AND FIREABLE(Transketolase2) AND NOT FIREABLE(G6P_dehydrogenase))))) : E (F (((FIREABLE(Hexokinase) OR FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Hexokinase)) AND ((FIREABLE(Transketolase2) AND FIREABLE(Pyruvate_kinase)) OR (FIREABLE(TIM_backward) AND FIREABLE(Phosphoglucose_isomerase))) AND NOT FIREABLE(Hexokinase) AND FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Aldolase)))) : E (F (FIREABLE(Phosphoglycerate_mutase))) : E (F (FIREABLE(Phosphoglycerate_mutase))) : E (F (FIREABLE(Enolase))) : E (F (FIREABLE(Phosphoglycerate_mutase))) : E (F (FIREABLE(Phosphoglycerate_mutase))) : E (F (((NOT FIREABLE(Phosphoglucose_isomerase) OR NOT FIREABLE(remove) OR (NOT FIREABLE(Phosphoglycerate_kinase) AND NOT FIREABLE(GAP_dehydrogenase))) AND FIREABLE(remove)))) : E (F (FIREABLE(Lactate_dehydrogenase))) : E (F ((FIREABLE(Aldolase) AND NOT FIREABLE(Lactate_dehydrogenase) AND (FIREABLE(Phosphoglucose_isomerase) OR (NOT FIREABLE(Aldolase) AND NOT FIREABLE(Phosphoglucose_isomerase)))))) : E (F (FIREABLE(Enolase))) : A (G ((NOT FIREABLE(Glutathione_reductose) OR FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Enolase)))) : A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Transketolase1) OR NOT FIREABLE(Transketolase1) OR NOT FIREABLE(Phosphoglucose_isomerase) OR (FIREABLE(TIM_backward) AND NOT FIREABLE(Transketolase2))))) : E (F (((FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Transketolase2)) AND FIREABLE(Ru5P_epimerase) AND FIREABLE(Phosphoglycerate_mutase) AND ((FIREABLE(G6P_dehydrogenase) AND FIREABLE(remove) AND (FIREABLE(Lactate_dehydrogenase))) OR (FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Transaldolase) AND FIREABLE(Glutathione_oxidation)))))) : E (F ((FIREABLE(Transaldolase) AND NOT FIREABLE(Glutathione_reductose)))) : A (G (()))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Phosphofructokinase)) OR (FIREABLE(Transketolase2) AND FIREABLE(Phosphoglucose_isomerase)) OR NOT FIREABLE(Hexokinase) OR NOT FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(TIM_backward) AND FIREABLE(remove) AND (FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Ru5P_epimerase)) AND FIREABLE(Aldolase) AND FIREABLE(Transketolase2) AND NOT FIREA... (shortened)
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(Hexokinase) OR FIREABLE(Phosphoglucose_isomerase) OR FIREABLE(Hexokinase)) AND ((FIREABLE(Transketolase2) AND FIREABLE(Pyruvate_kinase)) OR (FIREABLE(TIM_backward) AND FIREABLE(Phosphoglucose_isomerase))) AND NOT FIREABLE(Hexokinase) AND FIREABLE(Phosphofructokinase) AND NOT FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Aldolase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 20 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-2.sara
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-3.sara
lola: ========================================
lola: subprocess 4 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Enolase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-4.sara
lola: ========================================
lola: subprocess 5 will run for 321 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-5.sara
lola: ========================================
lola: subprocess 6 will run for 354 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-6.sara
lola: ========================================
lola: subprocess 7 will run for 393 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((NOT FIREABLE(Phosphoglucose_isomerase) OR NOT FIREABLE(remove) OR (NOT FIREABLE(Phosphoglycerate_kinase) AND NOT FIREABLE(GAP_dehydrogenase))) AND FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 44 literals and 12 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-7.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000010000-ReachabilityFireability-7.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 4315820 markings, 7792752 edges, 863164 markings/sec, 0 secs
lola: sara is running 5 secs || 8455129 markings, 15288597 edges, 827862 markings/sec, 5 secs
lola: sara is running 10 secs || 12564724 markings, 22731125 edges, 821919 markings/sec, 10 secs
lola: sara is running 15 secs || 16662725 markings, 29814333 edges, 819600 markings/sec, 15 secs
lola: sara is running 20 secs || 20502863 markings, 36370190 edges, 768028 markings/sec, 20 secs
lola: sara is running 25 secs || 24266969 markings, 42779580 edges, 752821 markings/sec, 25 secs
lola: sara is running 30 secs || 28292190 markings, 49494506 edges, 805044 markings/sec, 30 secs
lola: sara is running 35 secs || 32115926 markings, 55988483 edges, 764747 markings/sec, 35 secs
lola: sara is running 40 secs || 36047532 markings, 63109654 edges, 786321 markings/sec, 40 secs
lola: sara is running 45 secs || 40142709 markings, 70527641 edges, 819035 markings/sec, 45 secs
lola: sara is running 50 secs || 44271872 markings, 78007828 edges, 825833 markings/sec, 50 secs
lola: sara is running 55 secs || 48414419 markings, 85512743 edges, 828509 markings/sec, 55 secs
lola: sara is running 60 secs || 52575014 markings, 92693981 edges, 832119 markings/sec, 60 secs
lola: sara is running 65 secs || 56806552 markings, 99222086 edges, 846308 markings/sec, 65 secs
lola: sara is running 70 secs || 60921157 markings, 105562596 edges, 822921 markings/sec, 70 secs
lola: sara is running 75 secs || 65045051 markings, 111919305 edges, 824779 markings/sec, 75 secs
lola: sara is running 80 secs || 69106238 markings, 118534293 edges, 812237 markings/sec, 80 secs
lola: sara is running 85 secs || 72232981 markings, 124805081 edges, 625349 markings/sec, 85 secs
lola: sara is running 90 secs || 75936456 markings, 131202928 edges, 740695 markings/sec, 90 secs
lola: sara is running 95 secs || 79782333 markings, 137755976 edges, 769175 markings/sec, 95 secs
lola: sara is running 100 secs || 83728680 markings, 144482086 edges, 789269 markings/sec, 100 secs
lola: sara is running 105 secs || 87674958 markings, 151210332 edges, 789256 markings/sec, 105 secs
lola: sara is running 110 secs || 91700454 markings, 158075170 edges, 805099 markings/sec, 110 secs
lola: sara is running 115 secs || 95710646 markings, 164594532 edges, 802038 markings/sec, 115 secs
lola: sara is running 120 secs || 98632097 markings, 169279403 edges, 584290 markings/sec, 120 secs
lola: sara is running 125 secs || 102563236 markings, 175479469 edges, 786228 markings/sec, 125 secs
lola: sara is running 130 secs || 107046955 markings, 182204810 edges, 896744 markings/sec, 130 secs
lola: sara is running 135 secs || 111455807 markings, 188821131 edges, 881770 markings/sec, 135 secs
lola: sara is running 140 secs || 115833319 markings, 195390397 edges, 875502 markings/sec, 140 secs
lola: sara is running 145 secs || 120159735 markings, 201892281 edges, 865283 markings/sec, 145 secs
lola: sara is running 150 secs || 123991789 markings, 208032230 edges, 766411 markings/sec, 150 secs
lola: sara is running 155 secs || 127707381 markings, 213945723 edges, 743118 markings/sec, 155 secs
lola: sara is running 160 secs || 131655943 markings, 220035719 edges, 789712 markings/sec, 160 secs
lola: sara is running 165 secs || 135731734 markings, 226323396 edges, 815158 markings/sec, 165 secs
lola: sara is running 170 secs || 139892658 markings, 232744371 edges, 832185 markings/sec, 170 secs
lola: sara is running 175 secs || 144057361 markings, 239173019 edges, 832941 markings/sec, 175 secs
lola: sara is running 180 secs || 148263861 markings, 245668571 edges, 841300 markings/sec, 180 secs
lola: sara is running 185 secs || 152475752 markings, 252173734 edges, 842378 markings/sec, 185 secs
lola: sara is running 190 secs || 155887968 markings, 258748490 edges, 682443 markings/sec, 190 secs
lola: sara is running 195 secs || 158929029 markings, 264839885 edges, 608212 markings/sec, 195 secs
lola: sara is running 200 secs || 162022415 markings, 271035778 edges, 618677 markings/sec, 200 secs
lola: sara is running 205 secs || 165595426 markings, 277516057 edges, 714602 markings/sec, 205 secs
lola: sara is running 210 secs || 169204314 markings, 283303518 edges, 721778 markings/sec, 210 secs
lola: sara is running 215 secs || 172905089 markings, 289237691 edges, 740155 markings/sec, 215 secs
lola: sara is running 220 secs || 176837976 markings, 296313151 edges, 786577 markings/sec, 220 secs
lola: sara is running 225 secs || 180427181 markings, 302798710 edges, 717841 markings/sec, 225 secs
lola: sara is running 230 secs || 181890843 markings, 305438664 edges, 292732 markings/sec, 230 secs
lola: sara is running 235 secs || 181895081 markings, 305447147 edges, 848 markings/sec, 235 secs
lola: sara is running 240 secs || 181905423 markings, 305467849 edges, 2068 markings/sec, 240 secs
lola: sara is running 245 secs || 181994182 markings, 305626312 edges, 17752 markings/sec, 245 secs
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 8 will run for 411 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Lactate_dehydrogenase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 9 will run for 469 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Aldolase) AND NOT FIREABLE(Lactate_dehydrogenase) AND (FIREABLE(Phosphoglucose_isomerase) OR (NOT FIREABLE(Aldolase) AND NOT FIREABLE(Phosphoglucose_isomerase))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-9.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000010000-ReachabilityFireability-9.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution produced
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 10 will run for 547 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Enolase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-10.sara
lola: subprocess 11 will run for 657 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: lola: lola: ...considering subproblem: A (G ((NOT FIREABLE(Glutathione_reductose) OR FIREABLE(G6P_dehydrogenase) OR NOT FIREABLE(Enolase))))========================================

lola: state equation: calling and running sara========================================

lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 12 literals and 3 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-11.sara
lola: subprocess 12 will run for 821 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: lola: ...considering subproblem: A (G ((NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Transketolase1) OR NOT FIREABLE(Transketolase1) OR NOT FIREABLE(Phosphoglucose_isomerase) OR (FIREABLE(TIM_backward) AND NOT FIREABLE(Transketolase2)))))
lola: ========================================
========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: lola: state equation: calling and running sara
RUNNING
sara: try reading problem file GPPP-PT-C0100N0000010000-ReachabilityFireability-10.sara.
lola: state equation: Generated DNF with 19 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-12.sara
sara: try reading problem file GPPP-PT-C0100N0000010000-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
sara: place or transition ordering is non-deterministic

lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000010000-ReachabilityFireability-12.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution produced
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 13 will run for 1095 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Transketolase2)) AND FIREABLE(Ru5P_epimerase) AND FIREABLE(Phosphoglycerate_mutase) AND ((FIREABLE(G6P_dehydrogenase) AND FIREABLE(remove) AND (FIREABLE(Lactate_dehydrogenase))) OR (FIREABLE(Phosphoglucose_isomerase) AND FIREABLE(Transaldolase) AND FIREABLE(Glutathione_oxidation))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 46 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000010000-ReachabilityFireability-13.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000010000-ReachabilityFireability-13.sara.
sara: place or transition ordering is non-deterministic

lola: sara is running 0 secs || 3111624 markings, 8280004 edges, 622325 markings/sec, 0 secs
lola: sara is running 5 secs || 6096502 markings, 16120473 edges, 596976 markings/sec, 5 secs
lola: sara is running 10 secs || 9131222 markings, 24007717 edges, 606944 markings/sec, 10 secs
lola: sara is running 15 secs || 12186825 markings, 31915128 edges, 611121 markings/sec, 15 secs
lola: sara is running 20 secs || 15219572 markings, 39716058 edges, 606549 markings/sec, 20 secs
lola: sara is running 25 secs || 18285330 markings, 47580381 edges, 613152 markings/sec, 25 secs
lola: sara is running 30 secs || 21358342 markings, 55452028 edges, 614602 markings/sec, 30 secs
lola: sara is running 35 secs || 24433782 markings, 63298801 edges, 615088 markings/sec, 35 secs
lola: sara is running 40 secs || 27521532 markings, 71150143 edges, 617550 markings/sec, 40 secs
lola: sara is running 45 secs || 30539544 markings, 78822500 edges, 603602 markings/sec, 45 secs
lola: sara is running 50 secs || 33654610 markings, 86733249 edges, 623013 markings/sec, 50 secs
lola: sara is running 55 secs || 36757827 markings, 94577390 edges, 620643 markings/sec, 55 secs
lola: sara is running 60 secs || 39884850 markings, 102461412 edges, 625405 markings/sec, 60 secs
lola: sara is running 65 secs || 43048833 markings, 110392187 edges, 632797 markings/sec, 65 secs
lola: sara is running 70 secs || 46253150 markings, 118368674 edges, 640863 markings/sec, 70 secs
lola: sara is running 75 secs || 49646702 markings, 127071226 edges, 678710 markings/sec, 75 secs
lola: sara is running 80 secs || 52983444 markings, 135624660 edges, 667348 markings/sec, 80 secs
lola: sara is running 85 secs || 56281510 markings, 144069366 edges, 659613 markings/sec, 85 secs
lola: sara is running 90 secs || 59572929 markings, 152510381 edges, 658284 markings/sec, 90 secs
lola: sara is running 95 secs || 62825382 markings, 160836530 edges, 650491 markings/sec, 95 secs
lola: sara is running 100 secs || 66064671 markings, 169144744 edges, 647858 markings/sec, 100 secs
lola: sara is running 105 secs || 69335605 markings, 177525984 edges, 654187 markings/sec, 105 secs
lola: sara is running 110 secs || 72574234 markings, 185823242 edges, 647726 markings/sec, 110 secs
lola: sara is running 115 secs || 75789305 markings, 194065518 edges, 643014 markings/sec, 115 secs
lola: sara is running 120 secs || 79071352 markings, 202470020 edges, 656409 markings/sec, 120 secs
lola: sara is running 125 secs || 82320333 markings, 210800967 edges, 649796 markings/sec, 125 secs
lola: sara is running 130 secs || 85501551 markings, 218946082 edges, 636244 markings/sec, 130 secs
lola: sara is running 135 secs || 88761942 markings, 227306808 edges, 652078 markings/sec, 135 secs
lola: sara is running 140 secs || 92054717 markings, 235733672 edges, 658555 markings/sec, 140 secs
lola: sara is running 145 secs || 95386671 markings, 244279775 edges, 666391 markings/sec, 145 secs
lola: sara is running 150 secs || 98684865 markings, 252731774 edges, 659639 markings/sec, 150 secs
lola: sara is running 155 secs || 101932331 markings, 261049824 edges, 649493 markings/sec, 155 secs
lola: sara is running 160 secs || 105178785 markings, 269372600 edges, 649291 markings/sec, 160 secs
lola: sara is running 165 secs || 108430231 markings, 277697715 edges, 650289 markings/sec, 165 secs
lola: sara is running 170 secs || 111708997 markings, 286104363 edges, 655753 markings/sec, 170 secs
lola: sara is running 175 secs || 114953790 markings, 294410511 edges, 648959 markings/sec, 175 secs
lola: sara is running 180 secs || 118168920 markings, 302655855 edges, 643026 markings/sec, 180 secs
lola: sara is running 185 secs || 121418457 markings, 310973237 edges, 649907 markings/sec, 185 secs
lola: sara is running 190 secs || 124625179 markings, 319197545 edges, 641344 markings/sec, 190 secs
lola: sara is running 195 secs || 127779396 markings, 327271768 edges, 630843 markings/sec, 195 secs
lola: sara is running 200 secs || 131101006 markings, 335789038 edges, 664322 markings/sec, 200 secs
lola: sara is running 205 secs || 134359396 markings, 344131485 edges, 651678 markings/sec, 205 secs
lola: sara is running 210 secs || 137547539 markings, 352306142 edges, 637629 markings/sec, 210 secs
lola: sara is running 215 secs || 140781472 markings, 360585492 edges, 646787 markings/sec, 215 secs
lola: sara is running 220 secs || 143993913 markings, 368821434 edges, 642488 markings/sec, 220 secs
lola: sara is running 225 secs || 147215708 markings, 377070004 edges, 644359 markings/sec, 225 secs
lola: sara is running 230 secs || 150338411 markings, 385076725 edges, 624541 markings/sec, 230 secs
lola: sara is running 235 secs || 153465516 markings, 393081309 edges, 625421 markings/sec, 235 secs
lola: sara is running 240 secs || 156630661 markings, 401197927 edges, 633029 markings/sec, 240 secs
lola: sara is running 245 secs || 159752363 markings, 409190489 edges, 624340 markings/sec, 245 secs
lola: sara is running 250 secs || 162895350 markings, 417246925 edges, 628597 markings/sec, 250 secs
lola: sara is running 255 secs || 166005583 markings, 425213777 edges, 622047 markings/sec, 255 secs
lola: sara is running 260 secs || 169087442 markings, 433096667 edges, 616372 markings/sec, 260 secs
lola: sara is running 265 secs || 171904997 markings, 440779551 edges, 563511 markings/sec, 265 secs
lola: sara is running 270 secs || 174478933 markings, 447675927 edges, 514787 markings/sec, 270 secs
lola: sara is running 275 secs || 177305096 markings, 455186192 edges, 565233 markings/sec, 275 secs
lola: sara is running 280 secs || 180101476 markings, 462636435 edges, 559276 markings/sec, 280 secs
lola: sara is running 285 secs || 182946004 markings, 470145559 edges, 568906 markings/sec, 285 secs
lola: sara is running 290 secs || 185785729 markings, 477649676 edges, 567945 markings/sec, 290 secs
lola: sara is running 295 secs || 188220584 markings, 484075018 edges, 486971 markings/sec, 295 secs
lola: sara is running 300 secs || 188230215 markings, 484100748 edges, 1926 markings/sec, 300 secs
lola: sara is running 305 secs || 188240844 markings, 484129086 edges, 2126 markings/sec, 305 secs
lola: sara is running 310 secs || 188243817 markings, 484137051 edges, 595 markings/sec, 310 secs
lola: sara is running 315 secs || 188249287 markings, 484150810 edges, 1094 markings/sec, 315 secs
lola: sara is running 320 secs || 188271482 markings, 484209347 edges, 4439 markings/sec, 320 secs
lola: sara is running 325 secs || 188283112 markings, 484240011 edges, 2326 markings/sec, 325 secs
lola: sara is running 330 secs || 188291746 markings, 484262801 edges, 1727 markings/sec, 330 secs
lola: sara is running 335 secs || 188308668 markings, 484307542 edges, 3384 markings/sec, 335 secs
lola: sara is running 340 secs || 188315504 markings, 484325547 edges, 1367 markings/sec, 340 secs
lola: sara is running 345 secs || 188329852 markings, 484363426 edges, 2870 markings/sec, 345 secs
lola: sara is running 350 secs || 188352597 markings, 484423519 edges, 4549 markings/sec, 350 secs
lola: sara is running 355 secs || 188371100 markings, 484472366 edges, 3701 markings/sec, 355 secs
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 14 will run for 1459 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Transaldolase) AND NOT FIREABLE(Glutathione_reductose))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 8 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: subprocess 15 will run for 2919 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0100N0000010000-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: ========================================
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: ========================================
lola: RESULT
lola:
SUMMARY: no yes yes yes yes yes yes unknown yes yes yes no no unknown yes yes
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-0 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-2 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-3 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-4 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-6 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-7 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-10 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-11 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-13 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-14 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000010000-ReachabilityFireability-15 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----

BK_STOP 1496397538635

--------------------
content from stderr:

----- Start make prepare stderr -----
----- Start make result stderr -----
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_GPPP-PT-C0100N0000010000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_GPPP-PT-C0100N0000010000.tgz
mv S_GPPP-PT-C0100N0000010000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool lola"
echo " Input is S_GPPP-PT-C0100N0000010000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r108-blw3-149441612600558"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;