Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool lola
Input is S_GPPP-PT-C0001N0000000100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r108-blw3-149441612500526
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-0
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-1
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-15
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-2
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-3
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-4
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-5
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-6
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-7
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-8
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1496393676172


Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
S_GPPP-PT-C0001N0000000100: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
S_GPPP-PT-C0001N0000000100: translating PT formula CTLFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
CTLFireability @ S_GPPP-PT-C0001N0000000100 @ 3540 seconds
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 20 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0001N0000000100-CTLFireability.task
lola: E (F ((A (X ((FIREABLE(generate) OR FIREABLE(Glutathione_reductose)))) AND (E (G (FIREABLE(Ru5P_epimerase))) AND A (G (FIREABLE(Phosphoglycerate_mutase))))))) : (E (((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U E (X (FIREABLE(Pyruvate_kinase))))) OR (A ((FIREABLE(G6P_dehydrogenase) U (FIREABLE(Phosphofructokinase) OR FIREABLE(Phosphoglycerate_kinase)))) AND (FIREABLE(Phosphofructokinase) OR NOT(A (X (FIREABLE(Ru5P_epimerase))))))) : E (F (A (X (A (X (FIREABLE(Transketolase1))))))) : (A (G (E (X ((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation)))))) OR E (F (FIREABLE(remove)))) : E (F (A (G ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose) AND FIREABLE(Enolase) AND FIREABLE(Transketolase1)))))) : E (F (FIREABLE(Lactate_dehydrogenase))) : E (G ((E ((FIREABLE(Aldolase) U FIREABLE(Phosphoclucose_isomerase))) OR NOT FIREABLE(TIM_forward)))) : NOT(A (G (E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase))))))) : ((E (((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase))) AND NOT(E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Ru5P_isomerase)))))) OR (NOT(E ((FIREABLE(TIM_forward) U FIREABLE(Phosphofructokinase)))) AND (FIREABLE(Aldolase) OR FIREABLE(Lactate_dehydrogenase)))) : A (F (E (((FIREABLE(Hexokinase) AND FIREABLE(Glutathione_oxidation)) U (FIREABLE(Transketolase1) OR FIREABLE(TIM_backward)))))) : A (G (E (((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_oxidation)) U NOT FIREABLE(Lactate_dehydrogenase))))) : NOT(A (F ((E (F (FIREABLE(remove))) AND (FIREABLE(Transaldolase) OR FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Phosphoclucose_isomerase)))))) : E (F (A (G (A (G (FIREABLE(Pyruvate_kinase))))))) : E ((A (X (NOT FIREABLE(Glutathione_reductose))) U E (X ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation)))))) : E (F (E (G (A (G (FIREABLE(Hexokinase))))))) : E (G ((FIREABLE(generate) OR A (F (FIREABLE(Aldolase))))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((A (X ((FIREABLE(generate) OR FIREABLE(Glutathione_reductose)))) AND (E (G (FIREABLE(Ru5P_epimerase))) AND A (G (FIREABLE(Phosphoglycerate_mutase)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U (AX((FIREABLE(generate) OR FIREABLE(Glutathione_reductose))) AND (NOT(A(TRUE U NOT FIREABLE(Ru5P_epimerase))) AND NOT(E(TRUE U NOT FIREABLE(Phosphoglycerate_mutase))))))
lola: processed formula length: 179
lola: 6 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 3 significant temporal operators and needs 13 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 1346534 markings, 8200757 edges, 3689348869717491712 markings/sec, 0 secs
lola: 2484531 markings, 16051195 edges, 227599 markings/sec, 5 secs
lola: 3418008 markings, 22661054 edges, 186695 markings/sec, 10 secs
lola: 4437058 markings, 29763751 edges, 203810 markings/sec, 15 secs
lola: 5494921 markings, 37264990 edges, 211573 markings/sec, 20 secs
lola: 6626727 markings, 45084502 edges, 226361 markings/sec, 25 secs
lola: 7743292 markings, 52747613 edges, 223313 markings/sec, 30 secs
lola: 8798640 markings, 60220352 edges, 211070 markings/sec, 35 secs
lola: 9852707 markings, 67533010 edges, 210813 markings/sec, 40 secs
lola: 10929916 markings, 74937479 edges, 215442 markings/sec, 45 secs
lola: 12007154 markings, 82332743 edges, 215448 markings/sec, 50 secs
lola: 13080032 markings, 89704238 edges, 214576 markings/sec, 55 secs
lola: 14175522 markings, 97170043 edges, 219098 markings/sec, 60 secs
lola: 15183938 markings, 104143003 edges, 201683 markings/sec, 65 secs
lola: 16233918 markings, 111371212 edges, 209996 markings/sec, 70 secs
lola: 17304754 markings, 118753380 edges, 214167 markings/sec, 75 secs
lola: 18113015 markings, 124808940 edges, 161652 markings/sec, 80 secs
lola: 18881497 markings, 130732273 edges, 153696 markings/sec, 85 secs
lola: 19696195 markings, 137018169 edges, 162940 markings/sec, 90 secs
lola: 20505423 markings, 143267423 edges, 161846 markings/sec, 95 secs
lola: 21290028 markings, 149325132 edges, 156921 markings/sec, 100 secs
lola: 22076194 markings, 155398078 edges, 157233 markings/sec, 105 secs
lola: 22889883 markings, 161684334 edges, 162738 markings/sec, 110 secs
lola: 23711695 markings, 167893092 edges, 164362 markings/sec, 115 secs
lola: 24549789 markings, 173803026 edges, 167619 markings/sec, 120 secs
lola: 25428420 markings, 180018908 edges, 175726 markings/sec, 125 secs
lola: 26278119 markings, 186356094 edges, 169940 markings/sec, 130 secs
lola: 27147639 markings, 192778845 edges, 173904 markings/sec, 135 secs
lola: 28223775 markings, 200157393 edges, 215227 markings/sec, 140 secs
lola: 29273529 markings, 207373122 edges, 209951 markings/sec, 145 secs
lola: 30356080 markings, 214796297 edges, 216510 markings/sec, 150 secs
lola: 31428841 markings, 222139082 edges, 214552 markings/sec, 155 secs
lola: 32483531 markings, 229386389 edges, 210938 markings/sec, 160 secs
lola: 33570871 markings, 236757983 edges, 217468 markings/sec, 165 secs
lola: 34626971 markings, 243914744 edges, 211220 markings/sec, 170 secs
lola: 35710697 markings, 251106919 edges, 216745 markings/sec, 175 secs
lola: 36797885 markings, 257939517 edges, 217438 markings/sec, 180 secs
lola: 37765667 markings, 264521611 edges, 193556 markings/sec, 185 secs
lola: 38588298 markings, 270597183 edges, 164526 markings/sec, 190 secs
lola: 39421894 markings, 276852440 edges, 166719 markings/sec, 195 secs
lola: 40258094 markings, 283115680 edges, 167240 markings/sec, 200 secs
lola: 41091778 markings, 289349523 edges, 166737 markings/sec, 205 secs
lola: 41933888 markings, 295619886 edges, 168422 markings/sec, 210 secs
lola: 42777693 markings, 301890997 edges, 168761 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 1 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: (E (((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U E (X (FIREABLE(Pyruvate_kinase))))) OR (A ((FIREABLE(G6P_dehydrogenase) U (FIREABLE(Phosphofructokinase) OR FIREABLE(Phosphoglycerate_kinase)))) AND (FIREABLE(Phosphofructokinase) OR NOT(A (X (FIREABLE(Ru5P_epimerase)))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 1 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U E (X (FIREABLE(Pyruvate_kinase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U EX(FIREABLE(Pyruvate_kinase)))
lola: processed formula length: 125
lola: 5 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: SUBRESULT
lola: result: yes
lola: The Boolean predicate is true.
lola: subprocess 2 will run for 237 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (A (X (A (X (FIREABLE(Transketolase1)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U AX(AX(FIREABLE(Transketolase1))))
lola: processed formula length: 42
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: ========================================
lola: 1560503 markings, 8709176 edges, 3689348869717491712 markings/sec, 0 secs
lola: 2825126 markings, 16254471 edges, 252925 markings/sec, 5 secs
lola: 4010543 markings, 23293094 edges, 237083 markings/sec, 10 secs
lola: 5282357 markings, 30789733 edges, 254363 markings/sec, 15 secs
lola: 6644720 markings, 38864850 edges, 272473 markings/sec, 20 secs
lola: 7966963 markings, 46623736 edges, 264449 markings/sec, 25 secs
lola: 9231549 markings, 54127413 edges, 252917 markings/sec, 30 secs
lola: 10541371 markings, 61832115 edges, 261964 markings/sec, 35 secs
lola: 11852099 markings, 69480743 edges, 262146 markings/sec, 40 secs
lola: 13148767 markings, 77064994 edges, 259334 markings/sec, 45 secs
lola: 14520610 markings, 85173668 edges, 274369 markings/sec, 50 secs
lola: 15854627 markings, 92996974 edges, 266803 markings/sec, 55 secs
lola: 17184339 markings, 100844728 edges, 265942 markings/sec, 60 secs
lola: 18328503 markings, 107772223 edges, 228833 markings/sec, 65 secs
lola: 19451749 markings, 114672355 edges, 224649 markings/sec, 70 secs
lola: 20503573 markings, 121139649 edges, 210365 markings/sec, 75 secs
lola: 21586093 markings, 127798839 edges, 216504 markings/sec, 80 secs
lola: 22649090 markings, 134342536 edges, 212599 markings/sec, 85 secs
lola: 23711879 markings, 140818174 edges, 212558 markings/sec, 90 secs
lola: 24718024 markings, 146625832 edges, 201229 markings/sec, 95 secs
lola: 25863075 markings, 153301721 edges, 229010 markings/sec, 100 secs
lola: 26980086 markings, 160074693 edges, 223402 markings/sec, 105 secs
lola: 28312726 markings, 167895107 edges, 266528 markings/sec, 110 secs
lola: 29614646 markings, 175542384 edges, 260384 markings/sec, 115 secs
lola: 30908013 markings, 183140401 edges, 258673 markings/sec, 120 secs
lola: 32200708 markings, 190722842 edges, 258539 markings/sec, 125 secs
lola: 33527873 markings, 198445106 edges, 265433 markings/sec, 130 secs
lola: 34833798 markings, 205992255 edges, 261185 markings/sec, 135 secs
lola: 36155045 markings, 213345021 edges, 264249 markings/sec, 140 secs
lola: 37418235 markings, 220310450 edges, 252638 markings/sec, 145 secs
lola: 38518074 markings, 226847396 edges, 219968 markings/sec, 150 secs
lola: 39529703 markings, 232968462 edges, 202326 markings/sec, 155 secs
lola: 40596617 markings, 239415624 edges, 213383 markings/sec, 160 secs
lola: 41665286 markings, 245866776 edges, 213734 markings/sec, 165 secs
lola: 42731665 markings, 252295983 edges, 213276 markings/sec, 170 secs
lola: 43799990 markings, 258733523 edges, 213665 markings/sec, 175 secs
lola: 44899561 markings, 265368344 edges, 219914 markings/sec, 180 secs
lola: 45994544 markings, 271976965 edges, 218997 markings/sec, 185 secs
lola: 47128135 markings, 278848754 edges, 226718 markings/sec, 190 secs
lola: 48273025 markings, 285795379 edges, 228978 markings/sec, 195 secs
lola: 49342637 markings, 292226521 edges, 213922 markings/sec, 200 secs
lola: 50500163 markings, 299302364 edges, 231505 markings/sec, 205 secs
lola: 51591889 markings, 305764099 edges, 218345 markings/sec, 210 secs
lola: 52636344 markings, 312025811 edges, 208891 markings/sec, 215 secs
lola: 53702904 markings, 318436479 edges, 213312 markings/sec, 220 secs
lola: 54791194 markings, 325000579 edges, 217658 markings/sec, 225 secs
lola: 55848965 markings, 331396195 edges, 211554 markings/sec, 230 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 3 will run for 237 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: (A (G (E (X ((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation)))))) OR E (F (FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 3 will run for 237 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (X ((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(E(TRUE U NOT(EX((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation))))))
lola: processed formula length: 78
lola: 2 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 4 will run for 256 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: SUBRESULT
lola: result: yes
lola: The Boolean predicate is true.
lola: ========================================
lola: subprocess 4 will run for 256 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (A (G ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose) AND FIREABLE(Enolase) AND FIREABLE(Transketolase1))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: possible invariance not yet implemented, converting to CTL...
lola: processed formula: E(TRUE U NOT(E(TRUE U (NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Enolase) OR NOT FIREABLE(Transketolase1)))))
lola: processed formula length: 155
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 2261396 markings, 8823534 edges, 2590343567046082560 markings/sec, 0 secs
lola: 4389587 markings, 17340040 edges, 425638 markings/sec, 5 secs
lola: 6421176 markings, 25547918 edges, 406318 markings/sec, 10 secs
lola: 8434804 markings, 33613543 edges, 402726 markings/sec, 15 secs
lola: 10485273 markings, 41858655 edges, 410094 markings/sec, 20 secs
lola: 12448484 markings, 49750647 edges, 392642 markings/sec, 25 secs
lola: 14417419 markings, 57660708 edges, 393787 markings/sec, 30 secs
lola: 16435239 markings, 65789767 edges, 403564 markings/sec, 35 secs
lola: 18421316 markings, 73800293 edges, 397215 markings/sec, 40 secs
lola: 20408188 markings, 81809698 edges, 397374 markings/sec, 45 secs
lola: 22447627 markings, 90012671 edges, 407888 markings/sec, 50 secs
lola: 24449111 markings, 98053954 edges, 400297 markings/sec, 55 secs
lola: 26456489 markings, 106113410 edges, 401476 markings/sec, 60 secs
lola: 28443735 markings, 114059130 edges, 397449 markings/sec, 65 secs
lola: 30396477 markings, 121937081 edges, 390548 markings/sec, 70 secs
lola: 32315491 markings, 129677748 edges, 383803 markings/sec, 75 secs
lola: 34269010 markings, 137507416 edges, 390704 markings/sec, 80 secs
lola: 36207697 markings, 145298221 edges, 387737 markings/sec, 85 secs
lola: 38107005 markings, 152919451 edges, 379862 markings/sec, 90 secs
lola: 40033241 markings, 160669588 edges, 385247 markings/sec, 95 secs
lola: 41959498 markings, 168411401 edges, 385251 markings/sec, 100 secs
lola: 43946433 markings, 176382087 edges, 397387 markings/sec, 105 secs
lola: 45876233 markings, 184150099 edges, 385960 markings/sec, 110 secs
lola: 47757787 markings, 191729675 edges, 376311 markings/sec, 115 secs
lola: 49642669 markings, 199311898 edges, 376976 markings/sec, 120 secs
lola: 51313667 markings, 206029216 edges, 334200 markings/sec, 125 secs
lola: 53218270 markings, 213649962 edges, 380921 markings/sec, 130 secs
lola: 55117018 markings, 221291116 edges, 379750 markings/sec, 135 secs
lola: 57009644 markings, 228920275 edges, 378525 markings/sec, 140 secs
lola: 58905244 markings, 236549254 edges, 379120 markings/sec, 145 secs
lola: 60832096 markings, 244277193 edges, 385370 markings/sec, 150 secs
lola: 62733986 markings, 251720393 edges, 380378 markings/sec, 155 secs
lola: 64595914 markings, 258774982 edges, 372386 markings/sec, 160 secs
lola: 66426914 markings, 266157506 edges, 366200 markings/sec, 165 secs
lola: 68289941 markings, 273647154 edges, 372605 markings/sec, 170 secs
lola: 70152146 markings, 281116993 edges, 372441 markings/sec, 175 secs
lola: 72007554 markings, 288574466 edges, 371082 markings/sec, 180 secs
lola: 73845006 markings, 295936343 edges, 367490 markings/sec, 185 secs
lola: 75720585 markings, 303416312 edges, 375116 markings/sec, 190 secs
lola: 77546065 markings, 310730284 edges, 365096 markings/sec, 195 secs
lola: 79374259 markings, 318045768 edges, 365639 markings/sec, 200 secs
lola: 79620522 markings, 321506638 edges, 49253 markings/sec, 205 secs
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 5 will run for 261 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Lactate_dehydrogenase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 6 will run for 287 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (G ((E ((FIREABLE(Aldolase) U FIREABLE(Phosphoclucose_isomerase))) OR NOT FIREABLE(TIM_forward))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(A(TRUE U (NOT(E(FIREABLE(Aldolase) U FIREABLE(Phosphoclucose_isomerase))) AND FIREABLE(TIM_forward))))
lola: processed formula length: 106
lola: 4 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 7 will run for 319 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: NOT(A (G (E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase)))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: possible invariance not yet implemented, converting to CTL...
lola: processed formula: E(TRUE U NOT(E(TRUE U (FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase)))))
lola: processed formula length: 99
lola: 8 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: subprocess 8 will run for 358 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: ((E (((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase))) AND NOT(E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Ru5P_isomerase)))))) OR (NOT(E ((FIREABLE(TIM_forward) U FIREABLE(Phosphofructokinase)))) AND (FIREABLE(Aldolase) OR FIREABLE(Lactate_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 8 will run for 358 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase)))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase))
lola: processed formula length: 96
lola: 8 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: subprocess 9 will run for 410 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Ru5P_isomerase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is invariant.
lola: SUBRESULT
lola: result: yes
lola: The Boolean predicate is true.
lola: ========================================
lola: ========================================
lola: subprocess 9 will run for 410 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (F (E (((FIREABLE(Hexokinase) AND FIREABLE(Glutathione_oxidation)) U (FIREABLE(Transketolase1) OR FIREABLE(TIM_backward))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: A(TRUE U E((FIREABLE(Hexokinase) AND FIREABLE(Glutathione_oxidation)) U (FIREABLE(Transketolase1) OR FIREABLE(TIM_backward))))
lola: processed formula length: 127
lola: 2 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: subprocess 10 will run for 478 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_oxidation)) U NOT FIREABLE(Lactate_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(E(TRUE U NOT(E((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_oxidation)) U NOT FIREABLE(Lactate_dehydrogenase)))))
lola: processed formula length: 124
lola: 2 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 11 will run for 574 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: NOT(A (F ((E (F (FIREABLE(remove))) AND (FIREABLE(Transaldolase) OR FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Phosphoclucose_isomerase))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(A(TRUE U (E(TRUE U FIREABLE(remove)) AND (FIREABLE(Transaldolase) OR FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Phosphoclucose_isomerase)))))
lola: processed formula length: 152
lola: 13 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 12 will run for 717 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (A (G (A (G (FIREABLE(Pyruvate_kinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: possible invariance not yet implemented, converting to CTL...
lola: processed formula: E(TRUE U NOT(E(TRUE U NOT FIREABLE(Pyruvate_kinase))))
lola: processed formula length: 54
lola: 4 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 13 will run for 957 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E ((A (X (NOT FIREABLE(Glutathione_reductose))) U E (X ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(AX(NOT FIREABLE(Glutathione_reductose)) U EX((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation))))
lola: processed formula length: 118
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 14 will run for 1435 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (E (G (A (G (FIREABLE(Hexokinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U NOT(A(TRUE U E(TRUE U NOT FIREABLE(Hexokinase)))))
lola: processed formula length: 59
lola: 5 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 3 significant temporal operators and needs 13 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 15 will run for 2871 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (G ((FIREABLE(generate) OR A (F (FIREABLE(Aldolase))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(A(TRUE U (NOT FIREABLE(generate) AND NOT(A(TRUE U FIREABLE(Aldolase))))))
lola: processed formula length: 77
lola: 4 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: RESULT
lola:
SUMMARY: unknown yes unknown yes no yes no yes yes yes no no no no no no
lola: ========================================
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-3 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-4 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-6 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-7 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-11 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-13 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-14 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-15 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----

BK_STOP 1496394345822

--------------------
content from stderr:

----- Start make prepare stderr -----
----- Start make result stderr -----
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_GPPP-PT-C0001N0000000100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_GPPP-PT-C0001N0000000100.tgz
mv S_GPPP-PT-C0001N0000000100 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool lola"
echo " Input is S_GPPP-PT-C0001N0000000100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r108-blw3-149441612500526"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;