Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool tapaal
Input is GPPP-PT-C0100N0000010000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r029-blw3-149440265900553
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-0
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-1
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-15
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-2
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-3
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-4
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-5
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-6
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-7
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-8
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1494804345353

---> tapaal --- TAPAAL
Total timeout: 3600

*************************************
* TAPAAL verifying CTLFireability *
*************************************
---------------------------------------------------
Step 1: Parallel processing
---------------------------------------------------
Doing parallel verification of individual queries (16 in total)
Each query is verified by 2 parallel strategies for 60 seconds
------------------- QUERY 1 ----------------------
Solution found

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 1

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 1

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 29 places, 18 transitions
Structural reduction finished after 5.3e-05 seconds

Net reduction is enabled.
Removed transitions: 4
Removed places: 4
Applications of rule A: 2
Applications of rule B: 2
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF (_2PG >= 1)
Query after reduction: EF (_2PG >= 1)
Query size reduced from 4 to 4 nodes (0.00 percent reduction).
Query reduction finished after 0.003280 seconds.
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 29 places, 18 transitions
Structural reduction finished after 5.8e-05 seconds

Net reduction is enabled.
Removed transitions: 4
Removed places: 4
Applications of rule A: 2
Applications of rule B: 2
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0


Query is satisfied.

STATS:
discovered states: 2032
explored states: 1432
expanded states: 614
max tokens: 93001

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 1

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 2 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 2

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 2


------------------- QUERY 3 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 3

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 3


------------------- QUERY 4 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 4

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 4
/home/mcc/BenchKit/start.sh: line 6: 453 Segmentation fault /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 4


------------------- QUERY 5 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 5

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 5

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 30 places, 19 transitions
Structural reduction finished after 5.4e-05 seconds

Net reduction is enabled.
Removed transitions: 3
Removed places: 3
Applications of rule A: 2
Applications of rule B: 1
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF (((not (not (_2PG >= 1))) or ((((Xu5P >= 1) and (E4P >= 1)) and (start >= 1)) or (((NADH >= 1) and (Pyr >= 1)) and ((ATP >= 1) and (F6P >= 1))))) or ((ADP >= 1) and (PEP >= 1)))
Query after reduction: EF (((_2PG >= 1) or (((NADH >= 1) and (Pyr >= 1)) and ((ATP >= 1) and (F6P >= 1)))) or ((ADP >= 1) and (PEP >= 1)))
Query size reduced from 40 to 28 nodes (30.00 percent reduction).
Query reduction finished after 0.005424 seconds.
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 30 places, 19 transitions
Structural reduction finished after 5.9e-05 seconds

Net reduction is enabled.
Removed transitions: 3
Removed places: 3
Applications of rule A: 2
Applications of rule B: 1
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0


Query is satisfied.

STATS:
discovered states: 2033
explored states: 1433
expanded states: 615
max tokens: 93001

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 5

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-4 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 6 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 6

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 6

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF AX (((R5P >= 1) and (Xu5P >= 1)) and (((a1 >= 200) and (Ru5P >= 1)) and (_2PG >= 1)))
Query after reduction: EF deadlock
Query size reduced from 21 to 2 nodes (90.48 percent reduction).
Query reduction finished after 0.003168 seconds.
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 27 places, 16 transitions
Structural reduction finished after 5.8e-05 seconds

Net reduction is enabled.
Removed transitions: 6
Removed places: 6
Applications of rule A: 4
Applications of rule B: 2
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0


Query is satisfied.

STATS:
discovered states: 3658
explored states: 3249
expanded states: 2041
max tokens: 93001

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 6

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 7 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 7

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 7

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: (((NADPH >= 1) and (GSSG >= 1)) or AF E (((_1_3_BPG >= 1) and (ADP >= 1)) U ((ATP >= 1) and (F6P >= 1))))
Query after reduction: (((NADPH >= 1) and (GSSG >= 1)) or AF E (((_1_3_BPG >= 1) and (ADP >= 1)) U ((ATP >= 1) and (F6P >= 1))))
Query size reduced from 24 to 24 nodes (0.00 percent reduction).
Query reduction finished after 0.002614 seconds.


Query is satisfied.

STATS:
Time (seconds): 0.004942
Configurations: 2404
Markings: 1601
Edges: 2005
Processed Edges: 3209
Processed N. Edges: 0
Explored Configs: 1605
Query: ((tokens-count(NADPH) ge integer-constant(1) & tokens-count(GSSG) ge integer-constant(1)) | AFE((tokens-count(_1_3_BPG) ge integer-constant(1) & tokens-count(ADP) ge integer-constant(1))) U ((tokens-count(ATP) ge integer-constant(1) & tokens-count(F6P) ge integer-constant(1))))


Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is satisfied.

STATS:
Time (seconds): 0.004926
Configurations: 2404
Markings: 1601
Edges: 2005
Processed Edges: 3209
Processed N. Edges: 0
Explored Configs: 1605
Query: ((tokens-count(NADPH) ge integer-constant(1) & tokens-count(GSSG) ge integer-constant(1)) | AFE((tokens-count(_1_3_BPG) ge integer-constant(1) & tokens-count(ADP) ge integer-constant(1))) U ((tokens-count(ATP) ge integer-constant(1) & tokens-count(F6P) ge integer-constant(1))))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 7
parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 7

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-6 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 8 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 8

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 8


------------------- QUERY 9 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 9

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 9

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is satisfied.

STATS:
Time (seconds): 0.00415
Configurations: 2012
Markings: 1607
Edges: 1609
Processed Edges: 2810
Processed N. Edges: 0
Explored Configs: 1608
Query: (AF(tokens-count(ATP) ge integer-constant(1) & tokens-count(F6P) ge integer-constant(1)) | AF(((tokens-count(GSH) ge integer-constant(2) & (tokens-count(c2) ge integer-constant(1) & (tokens-count(Pi) ge integer-constant(1) & (tokens-count(NADplus) ge integer-constant(1) & tokens-count(GAP) ge integer-constant(1))))) & (tokens-count(ADP) ge integer-constant(1) & tokens-count(PEP) ge integer-constant(1))) | (tokens-count(a1) ge integer-constant(200) & tokens-count(Ru5P) ge integer-constant(1))))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 9

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 10 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 10

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 10

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10


Query is NOT satisfied.

STATS:
Time (seconds): 0.002052
Configurations: 805
Markings: 802
Edges: 805
Processed Edges: 1605
Processed N. Edges: 2
Explored Configs: 804
Query: !(((!(EF!((tokens-count(_3PG) ge integer-constant(1) | (tokens-count(R5P) ge integer-constant(1) & tokens-count(Xu5P) ge integer-constant(1))))) | ((((tokens-count(b2) ge integer-constant(1) & (tokens-count(G6P) ge integer-constant(1) & tokens-count(NADPplus) ge integer-constant(2))) & (tokens-count(a2) ge integer-constant(1) & tokens-count(Ru5P) ge integer-constant(1))) & tokens-count(start) ge integer-constant(1)) | (tokens-count(Gluc) ge integer-constant(1) & tokens-count(ATP) ge integer-constant(1)))) | AF((tokens-count(_3PG) ge integer-constant(1) & tokens-count(GSH) ge integer-constant(2)) | ((tokens-count(ATP) ge integer-constant(1) & tokens-count(F6P) ge integer-constant(1)) & (tokens-count(ATP) ge integer-constant(1) & tokens-count(F6P) ge integer-constant(1))))))

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 14500000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -q\ 0\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 10

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-9 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 11 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 11

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 11


------------------- QUERY 12 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 12

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 12


------------------- QUERY 13 ----------------------
Solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 13

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=30,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: AG (not (_2PG >= 1))
Query after reduction: AG (_2PG < 1)
Query size reduced from 4 to 4 nodes (0.00 percent reduction).
Query reduction finished after 0.000312 seconds.
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 29 places, 18 transitions
Structural reduction finished after 5.4e-05 seconds

Net reduction is enabled.
Removed transitions: 4
Removed places: 4
Applications of rule A: 2
Applications of rule B: 2
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 13

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=10,Stubborn_Reduction=ENABLED,Query_Simplication=DISABLED,Siphon_Trap=DISABLED,LPSolve_Timeout=10
Size of net before structural reductions: 33 places, 22 transitions
Size of net after structural reductions: 29 places, 18 transitions
Structural reduction finished after 6.2e-05 seconds

Net reduction is enabled.
Removed transitions: 4
Removed places: 4
Applications of rule A: 2
Applications of rule B: 2
Applications of rule C: 0
Applications of rule D: 0
Applications of rule E: 0


Query is NOT satisfied.

STATS:
discovered states: 2032
explored states: 1432
expanded states: 614
max tokens: 93001

parallel: This job succeeded:
/home/mcc/BenchKit/start.sh 7250000 /home/mcc/BenchKit/bin/verifypn-linux64 -s\ DFS\ -d\ 10 ./model.pnml ./CTLFireability.xml -x 13

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STRUCTURAL_REDUCTION STATE_COMPRESSION STUBBORN_SETS
------------------- QUERY 14 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 14

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 14


------------------- QUERY 15 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 15

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 15


------------------- QUERY 16 ----------------------
No solution found

Parameters: -s DFS -d 10 ./model.pnml ./CTLFireability.xml -x 16

Parameters: -s DFS -q 0 -d 10 ./model.pnml ./CTLFireability.xml -x 16


---------------------------------------------------
Step 2: Sequential processing
---------------------------------------------------
Remaining queries are verified sequentially.
Each query is verified for a dynamic timeout (at least 400 seconds)
------------------- QUERY 2 ----------------------
Running query 2 for 400 seconds. Remaining: 9 queries and 3038 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 2
No solution found
------------------- QUERY 3 ----------------------
Running query 3 for 400 seconds. Remaining: 8 queries and 2763 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 3

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: E (EF (start >= 1) U (((((NADPH >= 1) and (GSSG >= 1)) or ((R5P >= 1) and (Xu5P >= 1))) and (((b2 >= 1) and ((G6P >= 1) and (NADPplus >= 2))) and ((ADP >= 1) and (PEP >= 1)))) or ((((Gluc >= 1) and (ATP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))) and (((ADP >= 1) and (PEP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))))))
Query after reduction: E (EF (start >= 1) U (((((NADPH >= 1) and (GSSG >= 1)) or ((R5P >= 1) and (Xu5P >= 1))) and (((b2 >= 1) and ((G6P >= 1) and (NADPplus >= 2))) and ((ADP >= 1) and (PEP >= 1)))) or ((((Gluc >= 1) and (ATP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))) and (((ADP >= 1) and (PEP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))))))
Query size reduced from 72 to 72 nodes (0.00 percent reduction).
Query reduction finished after 0.008245 seconds.
No solution found
------------------- QUERY 4 ----------------------
Running query 4 for 400 seconds. Remaining: 7 queries and 2606 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 4
No solution found
------------------- QUERY 8 ----------------------
Running query 8 for 413 seconds. Remaining: 6 queries and 2481 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 8

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EF EX ((not ((R5P >= 1) and (Xu5P >= 1))) and (((ADP >= 1) and (PEP >= 1)) and ((Xu5P >= 1) and (E4P >= 1))))
Query after reduction: EF EX (((R5P < 1) or (Xu5P < 1)) and (((ADP >= 1) and (PEP >= 1)) and ((Xu5P >= 1) and (E4P >= 1))))
Query size reduced from 25 to 25 nodes (0.00 percent reduction).
Query reduction finished after 0.002940 seconds.
No solution found
------------------- QUERY 11 ----------------------
Running query 11 for 454 seconds. Remaining: 5 queries and 2272 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 11
No solution found
------------------- QUERY 12 ----------------------
Running query 12 for 523 seconds. Remaining: 4 queries and 2093 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 12
No solution found
------------------- QUERY 14 ----------------------
Running query 14 for 641 seconds. Remaining: 3 queries and 1925 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 14

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: EG EF (((Gluc >= 1) and (ATP >= 1)) and (((ADP >= 1) and (PEP >= 1)) and (GSH >= 2)))
Query after reduction: EG EF (((Gluc >= 1) and (ATP >= 1)) and (((ADP >= 1) and (PEP >= 1)) and (GSH >= 2)))
Query size reduced from 21 to 21 nodes (0.00 percent reduction).
Query reduction finished after 0.003210 seconds.
No solution found
------------------- QUERY 15 ----------------------
Running query 15 for 881 seconds. Remaining: 2 queries and 1762 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 15

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: (not (((DHAP >= 1) and A (((b1 >= 300) and (G6P >= 1)) U (_2PG >= 1))) or ((AF ((NADH >= 1) and (Pyr >= 1)) or (not ((FBP >= 1) and ((b1 >= 300) and (G6P >= 1))))) and (EF ((Lac >= 700) and (ATP >= 700)) or ((Xu5P >= 1) and (E4P >= 1))))))
Query after reduction: (((DHAP < 1) or (not A (((b1 >= 300) and (G6P >= 1)) U (_2PG >= 1)))) and ((EG ((NADH < 1) or (Pyr < 1)) and ((FBP >= 1) and ((b1 >= 300) and (G6P >= 1)))) or (AG (Lac < 700) and ((Xu5P < 1) or (E4P < 1)))))
Query size reduced from 53 to 49 nodes (7.55 percent reduction).
Query reduction finished after 0.003782 seconds.
No solution found
------------------- QUERY 16 ----------------------
Running query 16 for 1600 seconds. Remaining: 1 queries and 1600 seconds

Parameters: -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 16

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=ENABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: ((((c1 >= 700) and ((GAP >= 1) and (S7P >= 1))) or AG ((((_1_3_BPG >= 1) and (ADP >= 1)) or (GAP >= 1)) and ((DHAP >= 1) and ((R5P >= 1) and (Xu5P >= 1))))) or (AG ((not ((NADH >= 1) and (Pyr >= 1))) or (((ADP >= 1) and (PEP >= 1)) or ((a1 >= 200) and (Ru5P >= 1)))) or EF AG (FBP >= 1)))
Query after reduction: ((((c1 >= 700) and ((GAP >= 1) and (S7P >= 1))) or AG ((((_1_3_BPG >= 1) and (ADP >= 1)) or (GAP >= 1)) and ((DHAP >= 1) and ((R5P >= 1) and (Xu5P >= 1))))) or (AG (((NADH < 1) or (Pyr < 1)) or (((ADP >= 1) and (PEP >= 1)) or ((a1 >= 200) and (Ru5P >= 1)))) or EF AG (FBP >= 1)))
Query size reduced from 67 to 67 nodes (0.00 percent reduction).
Query reduction finished after 0.006859 seconds.
No solution found
---------------------------------------------------
Step 3: Multiquery processing
---------------------------------------------------
Remaining 9 queries are solved using multiquery
Time remaining: 1463 seconds of the initial 3600 seconds
Running multiquery on -x 2,3,4,8,11,12,14,15,16 for 1463 seconds

Parameters: -s DFS -d 100 -q 100 -p ./model.pnml ./CTLFireability.xml -x 2,3,4,8,11,12,14,15,16

Search=DFS,Trace=DISABLED,State_Space_Exploration=DISABLED,Structural_Reduction=AGGRESSIVE,Struct_Red_Timout=100,Stubborn_Reduction=DISABLED,Query_Simplication=ENABLED,QSTimeout=100,Siphon_Trap=DISABLED,LPSolve_Timeout=10

Query before reduction: (not ((not (not AF (GAP >= 1))) or ((R5P >= 1) and (Xu5P >= 1))))
Query after reduction: (EG (GAP < 1) and ((R5P < 1) or (Xu5P < 1)))
Query size reduced from 12 to 12 nodes (0.00 percent reduction).
Query reduction finished after 0.000717 seconds.

Query before reduction: E (EF (start >= 1) U (((((NADPH >= 1) and (GSSG >= 1)) or ((R5P >= 1) and (Xu5P >= 1))) and (((b2 >= 1) and ((G6P >= 1) and (NADPplus >= 2))) and ((ADP >= 1) and (PEP >= 1)))) or ((((Gluc >= 1) and (ATP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))) and (((ADP >= 1) and (PEP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))))))
Query after reduction: E (EF (start >= 1) U (((((NADPH >= 1) and (GSSG >= 1)) or ((R5P >= 1) and (Xu5P >= 1))) and (((b2 >= 1) and ((G6P >= 1) and (NADPplus >= 2))) and ((ADP >= 1) and (PEP >= 1)))) or ((((Gluc >= 1) and (ATP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))) and (((ADP >= 1) and (PEP >= 1)) or ((a1 >= 200) and (Ru5P >= 1))))))
Query size reduced from 72 to 72 nodes (0.00 percent reduction).
Query reduction finished after 0.008265 seconds.

Query before reduction: (not EF (((((b1 >= 300) and (G6P >= 1)) or (FBP >= 1)) and (((Xu5P >= 1) and (E4P >= 1)) or ((a1 >= 200) and (Ru5P >= 1)))) and EX ((ADP >= 1) and (PEP >= 1))))
Query after reduction: AG (((((b1 < 300) or (G6P < 1)) and (FBP < 1)) or (((Xu5P < 1) or (E4P < 1)) and ((a1 < 200) or (Ru5P < 1)))) or AX ((ADP < 1) or (PEP < 1)))
Query size reduced from 37 to 37 nodes (0.00 percent reduction).
Query reduction finished after 0.002217 seconds.

Query before reduction: EF EX ((not ((R5P >= 1) and (Xu5P >= 1))) and (((ADP >= 1) and (PEP >= 1)) and ((Xu5P >= 1) and (E4P >= 1))))
Query after reduction: EF EX (((R5P < 1) or (Xu5P < 1)) and (((ADP >= 1) and (PEP >= 1)) and ((Xu5P >= 1) and (E4P >= 1))))
Query size reduced from 25 to 25 nodes (0.00 percent reduction).
Query reduction finished after 0.002915 seconds.

Query before reduction: (EF (_2PG >= 1) or EG (not EF ((ADP >= 1) and (PEP >= 1))))
Query after reduction: (EF (_2PG >= 1) or EG AG ((ADP < 1) or (PEP < 1)))
Query size reduced from 14 to 14 nodes (0.00 percent reduction).
Query reduction finished after 0.000826 seconds.

Query before reduction: E ((not (not (not (FBP >= 1)))) U AG (_2PG >= 1))
Query after reduction: E ((FBP < 1) U AG (_2PG >= 1))
Query size reduced from 8 to 8 nodes (0.00 percent reduction).
Query reduction finished after 0.000663 seconds.

Query before reduction: EG EF (((Gluc >= 1) and (ATP >= 1)) and (((ADP >= 1) and (PEP >= 1)) and (GSH >= 2)))
Query after reduction: EG EF (((Gluc >= 1) and (ATP >= 1)) and (((ADP >= 1) and (PEP >= 1)) and (GSH >= 2)))
Query size reduced from 21 to 21 nodes (0.00 percent reduction).
Query reduction finished after 0.002918 seconds.

Query before reduction: (not (((DHAP >= 1) and A (((b1 >= 300) and (G6P >= 1)) U (_2PG >= 1))) or ((AF ((NADH >= 1) and (Pyr >= 1)) or (not ((FBP >= 1) and ((b1 >= 300) and (G6P >= 1))))) and (EF ((Lac >= 700) and (ATP >= 700)) or ((Xu5P >= 1) and (E4P >= 1))))))
Query after reduction: (((DHAP < 1) or (not A (((b1 >= 300) and (G6P >= 1)) U (_2PG >= 1)))) and ((EG ((NADH < 1) or (Pyr < 1)) and ((FBP >= 1) and ((b1 >= 300) and (G6P >= 1)))) or (AG (Lac < 700) and ((Xu5P < 1) or (E4P < 1)))))
Query size reduced from 53 to 49 nodes (7.55 percent reduction).
Query reduction finished after 0.003629 seconds.

Query before reduction: ((((c1 >= 700) and ((GAP >= 1) and (S7P >= 1))) or AG ((((_1_3_BPG >= 1) and (ADP >= 1)) or (GAP >= 1)) and ((DHAP >= 1) and ((R5P >= 1) and (Xu5P >= 1))))) or (AG ((not ((NADH >= 1) and (Pyr >= 1))) or (((ADP >= 1) and (PEP >= 1)) or ((a1 >= 200) and (Ru5P >= 1)))) or EF AG (FBP >= 1)))
Query after reduction: ((((c1 >= 700) and ((GAP >= 1) and (S7P >= 1))) or AG ((((_1_3_BPG >= 1) and (ADP >= 1)) or (GAP >= 1)) and ((DHAP >= 1) and ((R5P >= 1) and (Xu5P >= 1))))) or (AG (((NEnd of script.

BK_STOP 1494806757709

--------------------
content from stderr:

Command terminated by signal 11
Command being timed: "timeout 400 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 2"
User time (seconds): 268.50
System time (seconds): 6.34
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 4:34.86
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499428
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624423
Voluntary context switches: 3
Involuntary context switches: 633
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
Command being timed: "timeout 400 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 3"
User time (seconds): 151.06
System time (seconds): 5.49
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:36.65
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499692
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624883
Voluntary context switches: 5
Involuntary context switches: 438
Swaps: 0
File system inputs: 384
File system outputs: 8
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 400 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 4"
User time (seconds): 119.53
System time (seconds): 5.29
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:04.93
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499440
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624564
Voluntary context switches: 3
Involuntary context switches: 363
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
Command being timed: "timeout 413 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 8"
User time (seconds): 203.13
System time (seconds): 5.77
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 3:28.92
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499580
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624540
Voluntary context switches: 3
Involuntary context switches: 371
Swaps: 0
File system inputs: 0
File system outputs: 8
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 454 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 11"
User time (seconds): 173.06
System time (seconds): 5.66
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:58.87
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499396
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624449
Voluntary context switches: 3
Involuntary context switches: 518
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 523 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 12"
User time (seconds): 161.92
System time (seconds): 5.84
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:47.86
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499380
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624567
Voluntary context switches: 3
Involuntary context switches: 463
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
Command being timed: "timeout 641 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 14"
User time (seconds): 157.33
System time (seconds): 5.84
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:43.28
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499528
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624721
Voluntary context switches: 3
Involuntary context switches: 462
Swaps: 0
File system inputs: 0
File system outputs: 8
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
Command being timed: "timeout 881 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 15"
User time (seconds): 156.50
System time (seconds): 5.65
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:42.25
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499668
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624730
Voluntary context switches: 3
Involuntary context switches: 446
Swaps: 0
File system inputs: 0
File system outputs: 8
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc
Command terminated by signal 6
Command being timed: "timeout 1600 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 ./model.pnml ./CTLFireability.xml -x 16"
User time (seconds): 131.96
System time (seconds): 5.40
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 2:17.38
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499660
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3624692
Voluntary context switches: 3
Involuntary context switches: 316
Swaps: 0
File system inputs: 0
File system outputs: 8
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0
Command terminated by signal 11
Command being timed: "timeout 1463 /home/mcc/BenchKit/bin/verifypn-linux64 -s DFS -d 100 -q 100 -p ./model.pnml ./CTLFireability.xml -x 2,3,4,8,11,12,14,15,16"
User time (seconds): 268.73
System time (seconds): 5.84
Percent of CPU this job got: 99%
Elapsed (wall clock) time (h:mm:ss or m:ss): 4:34.74
Average shared text size (kbytes): 0
Average unshared data size (kbytes): 0
Average stack size (kbytes): 0
Average total size (kbytes): 0
Maximum resident set size (kbytes): 14499444
Average resident set size (kbytes): 0
Major (requiring I/O) page faults: 0
Minor (reclaiming a frame) page faults: 3625472
Voluntary context switches: 3
Involuntary context switches: 756
Swaps: 0
File system inputs: 0
File system outputs: 0
Socket messages sent: 0
Socket messages received: 0
Signals delivered: 0
Page size (bytes): 4096
Exit status: 0

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000010000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="tapaal"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000010000.tgz
mv GPPP-PT-C0100N0000010000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool tapaal"
echo " Input is GPPP-PT-C0100N0000010000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r029-blw3-149440265900553"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;