Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool lola
Input is GPPP-PT-C0001N0000000100, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r028-blw3-149440264400526
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-0
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-1
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-10
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-11
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-12
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-13
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-14
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-15
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-2
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-3
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-4
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-5
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-6
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-7
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-8
FORMULA_NAME GPPP-PT-C0001N0000000100-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1494720015163


Time: 3600 - MCC
----- Start make prepare stdout -----
checking for too many tokens
----- Start make result stdout -----
CTLFireability @ GPPP-PT-C0001N0000000100 @ 3540 seconds
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 20 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0001N0000000100-CTLFireability.task
lola: E (F ((A (X ((FIREABLE(generate) OR FIREABLE(Glutathione_reductose)))) AND (E (G (FIREABLE(Ru5P_epimerase))) AND A (G (FIREABLE(Phosphoglycerate_mutase))))))) : (E (((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U E (X (FIREABLE(Pyruvate_kinase))))) OR (A ((FIREABLE(G6P_dehydrogenase) U (FIREABLE(Phosphofructokinase) OR FIREABLE(Phosphoglycerate_kinase)))) AND (FIREABLE(Phosphofructokinase) OR NOT(A (X (FIREABLE(Ru5P_epimerase))))))) : E (F (A (X (A (X (FIREABLE(Transketolase1))))))) : (A (G (E (X ((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation)))))) OR E (F (FIREABLE(remove)))) : E (F (A (G ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose) AND FIREABLE(Enolase) AND FIREABLE(Transketolase1)))))) : E (F (FIREABLE(Lactate_dehydrogenase))) : E (G ((E ((FIREABLE(Aldolase) U FIREABLE(Phosphoclucose_isomerase))) OR NOT FIREABLE(TIM_forward)))) : NOT(A (G (E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase))))))) : ((E (((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase))) AND NOT(E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Ru5P_isomerase)))))) OR (NOT(E ((FIREABLE(TIM_forward) U FIREABLE(Phosphofructokinase)))) AND (FIREABLE(Aldolase) OR FIREABLE(Lactate_dehydrogenase)))) : A (F (E (((FIREABLE(Hexokinase) AND FIREABLE(Glutathione_oxidation)) U (FIREABLE(Transketolase1) OR FIREABLE(TIM_backward)))))) : A (G (E (((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_oxidation)) U NOT FIREABLE(Lactate_dehydrogenase))))) : NOT(A (F ((E (F (FIREABLE(remove))) AND (FIREABLE(Transaldolase) OR FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Phosphoclucose_isomerase)))))) : E (F (A (G (A (G (FIREABLE(Pyruvate_kinase))))))) : E ((A (X (NOT FIREABLE(Glutathione_reductose))) U E (X ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation)))))) : E (F (E (G (A (G (FIREABLE(Hexokinase))))))) : E (G ((FIREABLE(generate) OR A (F (FIREABLE(Aldolase))))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((A (X ((FIREABLE(generate) OR FIREABLE(Glutathione_reductose)))) AND (E (G (FIREABLE(Ru5P_epimerase))) AND A (G (FIREABLE(Phosphoglycerate_mutase)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U (AX((FIREABLE(generate) OR FIREABLE(Glutathione_reductose))) AND (NOT(A(TRUE U NOT FIREABLE(Ru5P_epimerase))) AND NOT(E(TRUE U NOT FIREABLE(Phosphoglycerate_mutase))))))
lola: processed formula length: 179
lola: 6 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 3 significant temporal operators and needs 13 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 1355246 markings, 8259954 edges, 3689348869717491712 markings/sec, 0 secs
lola: 2455708 markings, 15845721 edges, 220092 markings/sec, 5 secs
lola: 3353674 markings, 22206782 edges, 179593 markings/sec, 10 secs
lola: 4341151 markings, 29083213 edges, 197495 markings/sec, 15 secs
lola: 5317907 markings, 36020213 edges, 195351 markings/sec, 20 secs
lola: 6375016 markings, 43316748 edges, 211422 markings/sec, 25 secs
lola: 7373090 markings, 50251192 edges, 199615 markings/sec, 30 secs
lola: 8395378 markings, 57277753 edges, 204458 markings/sec, 35 secs
lola: 9265911 markings, 63525070 edges, 174107 markings/sec, 40 secs
lola: 10255337 markings, 70312961 edges, 197885 markings/sec, 45 secs
lola: 11213312 markings, 76885842 edges, 191595 markings/sec, 50 secs
lola: 12177038 markings, 83509016 edges, 192745 markings/sec, 55 secs
lola: 13255438 markings, 90829523 edges, 215680 markings/sec, 60 secs
lola: 14249731 markings, 97688346 edges, 198859 markings/sec, 65 secs
lola: 15219519 markings, 104391339 edges, 193958 markings/sec, 70 secs
lola: 16200067 markings, 111134878 edges, 196110 markings/sec, 75 secs
lola: 17190309 markings, 117965458 edges, 198048 markings/sec, 80 secs
lola: 18025950 markings, 124137172 edges, 167128 markings/sec, 85 secs
lola: 18721830 markings, 129501532 edges, 139176 markings/sec, 90 secs
lola: 19424885 markings, 134925455 edges, 140611 markings/sec, 95 secs
lola: 20199673 markings, 140905645 edges, 154958 markings/sec, 100 secs
lola: 20887589 markings, 146217879 edges, 137583 markings/sec, 105 secs
lola: 21600974 markings, 151727025 edges, 142677 markings/sec, 110 secs
lola: 22311845 markings, 157219990 edges, 142174 markings/sec, 115 secs
lola: 23006437 markings, 162583293 edges, 138918 markings/sec, 120 secs
lola: 23723947 markings, 167979592 edges, 143502 markings/sec, 125 secs
lola: 24425807 markings, 172941157 edges, 140372 markings/sec, 130 secs
lola: 25250114 markings, 178732686 edges, 164861 markings/sec, 135 secs
lola: 26044496 markings, 184580420 edges, 158876 markings/sec, 140 secs
lola: 26812496 markings, 190373689 edges, 153600 markings/sec, 145 secs
lola: 27748406 markings, 196889793 edges, 187182 markings/sec, 150 secs
lola: 28733325 markings, 203658190 edges, 196984 markings/sec, 155 secs
lola: 29737299 markings, 210549796 edges, 200795 markings/sec, 160 secs
lola: 30692415 markings, 217102120 edges, 191023 markings/sec, 165 secs
lola: 31649873 markings, 223660922 edges, 191492 markings/sec, 170 secs
lola: 32638398 markings, 230443100 edges, 197705 markings/sec, 175 secs
lola: 33634685 markings, 237194319 edges, 199257 markings/sec, 180 secs
lola: 34600009 markings, 243732168 edges, 193065 markings/sec, 185 secs
lola: 35627360 markings, 250565291 edges, 205470 markings/sec, 190 secs
lola: 36665922 markings, 257048170 edges, 207712 markings/sec, 195 secs
lola: 37506244 markings, 262754420 edges, 168064 markings/sec, 200 secs
lola: 38313011 markings, 268534355 edges, 161353 markings/sec, 205 secs
lola: 39052034 markings, 274078320 edges, 147805 markings/sec, 210 secs
lola: 39788480 markings, 279600065 edges, 147289 markings/sec, 215 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 1 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: (E (((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U E (X (FIREABLE(Pyruvate_kinase))))) OR (A ((FIREABLE(G6P_dehydrogenase) U (FIREABLE(Phosphofructokinase) OR FIREABLE(Phosphoglycerate_kinase)))) AND (FIREABLE(Phosphofructokinase) OR NOT(A (X (FIREABLE(Ru5P_epimerase)))))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 1 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U E (X (FIREABLE(Pyruvate_kinase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E((FIREABLE(Phosphoclucose_isomerase) OR FIREABLE(Transketolase1) OR NOT FIREABLE(remove)) U EX(FIREABLE(Pyruvate_kinase)))
lola: processed formula length: 125
lola: 5 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: SUBRESULT
lola: result: yes
lola: The Boolean predicate is true.
lola: subprocess 2 will run for 237 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (A (X (A (X (FIREABLE(Transketolase1)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U AX(AX(FIREABLE(Transketolase1))))
lola: processed formula length: 42
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: ========================================lola:
RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 1419669 markings, 7948531 edges, 3689348869717491712 markings/sec, 0 secs
lola: 2619613 markings, 15032026 edges, 239989 markings/sec, 5 secs
lola: 3533453 markings, 20466380 edges, 182768 markings/sec, 10 secs
lola: 4584564 markings, 26638408 edges, 210222 markings/sec, 15 secs
lola: 5696070 markings, 33269802 edges, 222301 markings/sec, 20 secs
lola: 6863046 markings, 40139036 edges, 233395 markings/sec, 25 secs
lola: 8010044 markings, 46882549 edges, 229400 markings/sec, 30 secs
lola: 9059795 markings, 53098792 edges, 209950 markings/sec, 35 secs
lola: 10275633 markings, 60265403 edges, 243168 markings/sec, 40 secs
lola: 11443803 markings, 67104606 edges, 233634 markings/sec, 45 secs
lola: 12689314 markings, 74427254 edges, 249102 markings/sec, 50 secs
lola: 13909912 markings, 81505366 edges, 244120 markings/sec, 55 secs
lola: 15070609 markings, 88404970 edges, 232139 markings/sec, 60 secs
lola: 16252164 markings, 95350628 edges, 236311 markings/sec, 65 secs
lola: 17407941 markings, 102164095 edges, 231155 markings/sec, 70 secs
lola: 18269616 markings, 107408839 edges, 172335 markings/sec, 75 secs
lola: 19193041 markings, 113081257 edges, 184685 markings/sec, 80 secs
lola: 20126123 markings, 118818396 edges, 186616 markings/sec, 85 secs
lola: 20983739 markings, 124092034 edges, 171523 markings/sec, 90 secs
lola: 21828370 markings, 129291283 edges, 168926 markings/sec, 95 secs
lola: 22716835 markings, 134757976 edges, 177693 markings/sec, 100 secs
lola: 23708307 markings, 140797179 edges, 198294 markings/sec, 105 secs
lola: 24540747 markings, 145641497 edges, 166488 markings/sec, 110 secs
lola: 25557275 markings, 151438291 edges, 203306 markings/sec, 115 secs
lola: 26447718 markings, 156849495 edges, 178089 markings/sec, 120 secs
lola: 27518046 markings, 163228515 edges, 214066 markings/sec, 125 secs
lola: 28731397 markings, 170356144 edges, 242670 markings/sec, 130 secs
lola: 29888003 markings, 177152236 edges, 231321 markings/sec, 135 secs
lola: 31021231 markings, 183801667 edges, 226646 markings/sec, 140 secs
lola: 32103104 markings, 190156156 edges, 216375 markings/sec, 145 secs
lola: 33215946 markings, 196644554 edges, 222568 markings/sec, 150 secs
lola: 34344067 markings, 203178810 edges, 225624 markings/sec, 155 secs
lola: 35483272 markings, 209692174 edges, 227841 markings/sec, 160 secs
lola: 36769688 markings, 216536088 edges, 257283 markings/sec, 165 secs
lola: 37821944 markings, 222663844 edges, 210451 markings/sec, 170 secs
lola: 38737532 markings, 228175748 edges, 183118 markings/sec, 175 secs
lola: 39686211 markings, 233916772 edges, 189736 markings/sec, 180 secs
lola: 40554690 markings, 239161786 edges, 173696 markings/sec, 185 secs
lola: 41474393 markings, 244715343 edges, 183941 markings/sec, 190 secs
lola: 42485984 markings, 250815083 edges, 202318 markings/sec, 195 secs
lola: 43418820 markings, 256435531 edges, 186567 markings/sec, 200 secs
lola: 44421569 markings, 262482539 edges, 200550 markings/sec, 205 secs
lola: 45335564 markings, 268002345 edges, 182799 markings/sec, 210 secs
lola: 46219372 markings, 273338889 edges, 176762 markings/sec, 215 secs
lola: 47190002 markings, 279226683 edges, 194126 markings/sec, 220 secs
lola: 48207428 markings, 285403985 edges, 203485 markings/sec, 225 secs
lola: 49146491 markings, 291021941 edges, 187813 markings/sec, 230 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 3 will run for 237 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: (A (G (E (X ((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation)))))) OR E (F (FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 3 will run for 237 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (X ((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(E(TRUE U NOT(EX((FIREABLE(remove) OR FIREABLE(Glutathione_oxidation))))))
lola: processed formula length: 78
lola: 2 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 4 will run for 256 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(remove)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: SUBRESULT
lola: result: yes
lola: The Boolean predicate is true.
lola: ========================================
lola: ========================================
lola: subprocess 4 will run for 256 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (A (G ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_reductose) AND FIREABLE(Enolase) AND FIREABLE(Transketolase1))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: possible invariance not yet implemented, converting to CTL...
lola: processed formula: E(TRUE U NOT(E(TRUE U (NOT FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Enolase) OR NOT FIREABLE(Transketolase1)))))
lola: processed formula length: 155
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: 2177231 markings, 8482404 edges, 2044168725090795520 markings/sec, 0 secs
lola: 4221463 markings, 16664916 edges, 408846 markings/sec, 5 secs
lola: 6037004 markings, 24005441 edges, 363108 markings/sec, 10 secs
lola: 7847696 markings, 31287492 edges, 362138 markings/sec, 15 secs
lola: 9670831 markings, 38581269 edges, 364627 markings/sec, 20 secs
lola: 11431677 markings, 45698386 edges, 352169 markings/sec, 25 secs
lola: 13203589 markings, 52777200 edges, 354382 markings/sec, 30 secs
lola: 14930057 markings, 59726019 edges, 345294 markings/sec, 35 secs
lola: 16713148 markings, 66914216 edges, 356618 markings/sec, 40 secs
lola: 18367832 markings, 73582921 edges, 330937 markings/sec, 45 secs
lola: 20056080 markings, 80392857 edges, 337650 markings/sec, 50 secs
lola: 21813469 markings, 87441026 edges, 351478 markings/sec, 55 secs
lola: 23466538 markings, 94123811 edges, 330614 markings/sec, 60 secs
lola: 25174492 markings, 100975854 edges, 341591 markings/sec, 65 secs
lola: 26853923 markings, 107706950 edges, 335886 markings/sec, 70 secs
lola: 28603183 markings, 114705415 edges, 349852 markings/sec, 75 secs
lola: 30267047 markings, 121411335 edges, 332773 markings/sec, 80 secs
lola: 31947210 markings, 128197063 edges, 336033 markings/sec, 85 secs
lola: 33547246 markings, 134623576 edges, 320007 markings/sec, 90 secs
lola: 35223369 markings, 141307170 edges, 335225 markings/sec, 95 secs
lola: 36828435 markings, 147773055 edges, 321013 markings/sec, 100 secs
lola: 38440666 markings, 154270424 edges, 322446 markings/sec, 105 secs
lola: 39959199 markings, 160374559 edges, 303707 markings/sec, 110 secs
lola: 41479316 markings, 166496798 edges, 304023 markings/sec, 115 secs
lola: 43160457 markings, 173255193 edges, 336228 markings/sec, 120 secs
lola: 44884873 markings, 180156540 edges, 344883 markings/sec, 125 secs
lola: 46471168 markings, 186534466 edges, 317259 markings/sec, 130 secs
lola: 48010154 markings, 192746030 edges, 307797 markings/sec, 135 secs
lola: 49575303 markings, 199040506 edges, 313030 markings/sec, 140 secs
lola: 51124043 markings, 205267125 edges, 309748 markings/sec, 145 secs
lola: 52689504 markings, 211502805 edges, 313092 markings/sec, 150 secs
lola: 54316928 markings, 218069833 edges, 325485 markings/sec, 155 secs
lola: 56014237 markings, 224902707 edges, 339462 markings/sec, 160 secs
lola: 57737350 markings, 231844920 edges, 344623 markings/sec, 165 secs
lola: 59463364 markings, 238792617 edges, 345203 markings/sec, 170 secs
lola: 61245587 markings, 245888142 edges, 356445 markings/sec, 175 secs
lola: 62879008 markings, 252212817 edges, 326684 markings/sec, 180 secs
lola: 64578495 markings, 258706316 edges, 339897 markings/sec, 185 secs
lola: 66352905 markings, 265860881 edges, 354882 markings/sec, 190 secs
lola: 68201827 markings, 273295103 edges, 369784 markings/sec, 195 secs
lola: 69937750 markings, 280256449 edges, 347185 markings/sec, 200 secs
lola: 71782624 markings, 287676587 edges, 368975 markings/sec, 205 secs
lola: 73570315 markings, 294834434 edges, 357538 markings/sec, 210 secs
lola: 75383435 markings, 302069809 edges, 362624 markings/sec, 215 secs
lola: 77201302 markings, 309331337 edges, 363573 markings/sec, 220 secs
lola: 79001499 markings, 316551716 edges, 360039 markings/sec, 225 secs
lola: 79620522 markings, 321506638 edges, 123805 markings/sec, 230 secs
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 5 will run for 258 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Lactate_dehydrogenase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 6 will run for 284 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (G ((E ((FIREABLE(Aldolase) U FIREABLE(Phosphoclucose_isomerase))) OR NOT FIREABLE(TIM_forward))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(A(TRUE U (NOT(E(FIREABLE(Aldolase) U FIREABLE(Phosphoclucose_isomerase))) AND FIREABLE(TIM_forward))))
lola: processed formula length: 106
lola: 4 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 7 will run for 316 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: NOT(A (G (E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase)))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: possible invariance not yet implemented, converting to CTL...
lola: processed formula: E(TRUE U NOT(E(TRUE U (FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Phosphoclucose_isomerase)))))
lola: processed formula length: 99
lola: 8 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: subprocess 8 will run for 355 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: ((E (((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase))) AND NOT(E (F ((FIREABLE(Phosphoglycerate_kinase) AND FIREABLE(Ru5P_isomerase)))))) OR (NOT(E ((FIREABLE(TIM_forward) U FIREABLE(Phosphofructokinase)))) AND (FIREABLE(Aldolase) OR FIREABLE(Lactate_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking a Boolean combination of formulas
lola: RUNNING
lola: subprocess 8 will run for 355 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase)))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E((FIREABLE(TIM_forward) AND FIREABLE(Phosphoglycerate_kinase)) U NOT FIREABLE(Pyruvate_kinase))
lola: processed formula length: 96
lola: 8 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: subprocess 9 will run for 406 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Phosphoglycerate_kinase) OR NOT FIREABLE(Ru5P_isomerase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is invariant.
lola: SUBRESULT
lola: result: yes
lola: The Boolean predicate is true.
lola: ========================================
lola: ========================================
lola: subprocess 9 will run for 406 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (F (E (((FIREABLE(Hexokinase) AND FIREABLE(Glutathione_oxidation)) U (FIREABLE(Transketolase1) OR FIREABLE(TIM_backward))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: A(TRUE U E((FIREABLE(Hexokinase) AND FIREABLE(Glutathione_oxidation)) U (FIREABLE(Transketolase1) OR FIREABLE(TIM_backward))))
lola: processed formula length: 127
lola: 2 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: yes
lola: produced by: CTL model checker
lola: The net satisfies the given formula.
lola: ========================================
lola: subprocess 10 will run for 474 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (E (((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_oxidation)) U NOT FIREABLE(Lactate_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(E(TRUE U NOT(E((FIREABLE(Pyruvate_kinase) AND FIREABLE(Glutathione_oxidation)) U NOT FIREABLE(Lactate_dehydrogenase)))))
lola: processed formula length: 124
lola: 2 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 11 will run for 569 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: NOT(A (F ((E (F (FIREABLE(remove))) AND (FIREABLE(Transaldolase) OR FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Phosphoclucose_isomerase))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(A(TRUE U (E(TRUE U FIREABLE(remove)) AND (FIREABLE(Transaldolase) OR FIREABLE(Glutathione_reductose) OR NOT FIREABLE(Phosphoclucose_isomerase)))))
lola: processed formula length: 152
lola: 13 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 12 will run for 711 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (A (G (A (G (FIREABLE(Pyruvate_kinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking possible invariance
lola: possible invariance not yet implemented, converting to CTL...
lola: processed formula: E(TRUE U NOT(E(TRUE U NOT FIREABLE(Pyruvate_kinase))))
lola: processed formula length: 54
lola: 4 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 13 will run for 948 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E ((A (X (NOT FIREABLE(Glutathione_reductose))) U E (X ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(AX(NOT FIREABLE(Glutathione_reductose)) U EX((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation))))
lola: processed formula length: 118
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Formula contains EX or AX operators, stubborn sets not applicable
lola: RUNNING
lola: CTL formula contains 1 significant temporal operators and needs 5 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 14 will run for 1422 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (E (G (A (G (FIREABLE(Hexokinase)))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: E(TRUE U NOT(A(TRUE U E(TRUE U NOT FIREABLE(Hexokinase)))))
lola: processed formula length: 59
lola: 5 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 3 significant temporal operators and needs 13 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: ========================================
lola: subprocess 15 will run for 2845 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (G ((FIREABLE(generate) OR A (F (FIREABLE(Aldolase))))))
lola: ========================================
lola: SUBTASK
lola: checking CTL
lola: processed formula: NOT(A(TRUE U (NOT FIREABLE(generate) AND NOT(A(TRUE U FIREABLE(Aldolase))))))
lola: processed formula length: 77
lola: 4 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C0001N0000000100-CTLFireability.task
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 80 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: Using CTL preserving stubborn sets
lola: RUNNING
lola: CTL formula contains 2 significant temporal operators and needs 9 bytes of payload
lola: Ignoring fairness constraints (--fair).
lola: SUBRESULT
lola: result: no
lola: produced by: CTL model checker
lola: The net does not satisfy the given formula.
lola: RESULT
lola:
SUMMARY: unknown yes unknown yes no yes no yes yes yes no no no no no no
lola: ========================================
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-0 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-3 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-4 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-6 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-7 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-11 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-13 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-14 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0001N0000000100-CTLFireability-15 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----

BK_STOP 1494720710497

--------------------
content from stderr:

----- Start make prepare stderr -----
----- Start make result stderr -----
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0001N0000000100"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0001N0000000100.tgz
mv GPPP-PT-C0001N0000000100 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool lola"
echo " Input is GPPP-PT-C0001N0000000100, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r028-blw3-149440264400526"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;