fond
Model Checking Contest @ Petri Nets 2017
7th edition, Zaragoza, Spain, June 27, 2017
Execution of r021-blw3-149440255300553
Last Updated
June 27, 2017

About the Execution of MARCIE for GPPP-PT-C0100N0000010000

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
15936.830 3600000.00 3599771.00 268.80 ???F????F??????? normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
........
=====================================================================
Generated by BenchKit 2-3254
Executing tool marcie
Input is GPPP-PT-C0100N0000010000, examination is CTLFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 1
Run identifier is r021-blw3-149440255300553
=====================================================================


--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-0
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-1
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-10
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-11
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-12
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-13
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-14
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-15
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-2
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-3
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-4
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-5
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-6
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-7
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-8
FORMULA_NAME GPPP-PT-C0100N0000010000-CTLFireability-9

=== Now, execution of the tool begins

BK_START 1494465335770

timeout --kill-after=10s --signal=SIGINT 1m for testing only

Marcie rev. 8852M (built: crohr on 2017-05-03)
A model checker for Generalized Stochastic Petri nets

authors: Alex Tovchigrechko (IDD package and CTL model checking)

Martin Schwarick (Symbolic numerical analysis and CSL model checking)

Christian Rohr (Simulative and approximative numerical model checking)

marcie@informatik.tu-cottbus.de

called as: marcie --net-file=model.pnml --mcc-file=CTLFireability.xml --memory=6

parse successfull
net created successfully

Net: GPPP_PT_C0100N0000010000
(NrP: 33 NrTr: 22 NrArc: 83)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 1.217sec

parse successfull
net created successfully

Net: GPPP_PT_C0100N0000010000
(NrP: 33 NrTr: 22 NrArc: 83)

parse formulas
formulas created successfully
place and transition orderings generation:0m 0.000sec

net check time: 0m 0.000sec

init dd package: 0m 3.766sec


RS generation: 5m 3.541sec


-> reachability set: #nodes 713713 (7.1e+05) #states 20,292,531,036,711,574 (16)



starting MCC model checker
--------------------------

checking: EF [IS_FIREABLE [Enolase]]
normalized: E [true U IS_FIREABLE [Enolase]]


FORMULA GPPP-PT-C0100N0000010000-CTLFireability-0 CANNOT_COMPUTE

MC time: 1m 2.822sec

checking: AG [~ [IS_FIREABLE [Enolase]]]
normalized: ~ [E [true U IS_FIREABLE [Enolase]]]


FORMULA GPPP-PT-C0100N0000010000-CTLFireability-12 CANNOT_COMPUTE

MC time: 0m 0.088sec

checking: ~ [[IS_FIREABLE [Transketolase1] | ~ [~ [AF [IS_FIREABLE [TIM_backward]]]]]]
normalized: ~ [[IS_FIREABLE [Transketolase1] | ~ [EG [~ [IS_FIREABLE [TIM_backward]]]]]]


FORMULA GPPP-PT-C0100N0000010000-CTLFireability-1 CANNOT_COMPUTE

MC time: 0m 0.013sec

checking: [EG [~ [EF [IS_FIREABLE [Pyruvate_kinase]]]] | EF [IS_FIREABLE [Enolase]]]
normalized: [E [true U IS_FIREABLE [Enolase]] | EG [~ [E [true U IS_FIREABLE [Pyruvate_kinase]]]]]


FORMULA GPPP-PT-C0100N0000010000-CTLFireability-10 CANNOT_COMPUTE

MC time: 0m 0.014sec

checking: E [~ [~ [~ [IS_FIREABLE [Aldolase]]]] U AG [IS_FIREABLE [Enolase]]]
normalized: E [~ [IS_FIREABLE [Aldolase]] U ~ [E [true U ~ [IS_FIREABLE [Enolase]]]]]


before gc: list nodes free: 2

after gc: idd nodes used:713734, unused:63286266; list nodes free:546873569
-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-11 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 0m55.897sec

checking: EF [AX [[[IS_FIREABLE [Enolase] & IS_FIREABLE [Ru5P_isomerase]] & IS_FIREABLE [Transketolase1]]]]
normalized: E [true U ~ [EX [~ [[IS_FIREABLE [Transketolase1] & [IS_FIREABLE [Enolase] & IS_FIREABLE [Ru5P_isomerase]]]]]]]

.MC time: 4m49.327sec

checking: [AF [E [IS_FIREABLE [Phosphoglycerate_kinase] U IS_FIREABLE [Phosphofructokinase]]] | IS_FIREABLE [Glutathione_reductose]]
normalized: [IS_FIREABLE [Glutathione_reductose] | ~ [EG [~ [E [IS_FIREABLE [Phosphoglycerate_kinase] U IS_FIREABLE [Phosphofructokinase]]]]]]

MC time: 4m23.869sec

checking: EF [EX [[[IS_FIREABLE [Transketolase2] & IS_FIREABLE [Pyruvate_kinase]] & ~ [IS_FIREABLE [Transketolase1]]]]]
normalized: E [true U EX [[~ [IS_FIREABLE [Transketolase1]] & [IS_FIREABLE [Transketolase2] & IS_FIREABLE [Pyruvate_kinase]]]]]

.
before gc: list nodes free: 21655652

after gc: idd nodes used:1734915, unused:62265085; list nodes free:538453478
MC time: 3m58.668sec

checking: EG [EF [[[IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Pyruvate_kinase]] & IS_FIREABLE [Hexokinase]]]]
normalized: EG [E [true U [IS_FIREABLE [Hexokinase] & [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Pyruvate_kinase]]]]]

MC time: 3m37.188sec

checking: ~ [EF [[EX [IS_FIREABLE [Pyruvate_kinase]] & [[IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Transketolase2]] & [IS_FIREABLE [Aldolase] | IS_FIREABLE [Phosphoglucose_isomerase]]]]]]
normalized: ~ [E [true U [[[IS_FIREABLE [Aldolase] | IS_FIREABLE [Phosphoglucose_isomerase]] & [IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Transketolase2]]] & EX [IS_FIREABLE [Pyruvate_kinase]]]]]


before gc: list nodes free: 41770163

after gc: idd nodes used:1904350, unused:62095650; list nodes free:534165623
.MC time: 3m17.554sec

checking: [AF [[IS_FIREABLE [Ru5P_isomerase] | [IS_FIREABLE [Pyruvate_kinase] & [IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]]]]] | AF [IS_FIREABLE [Phosphofructokinase]]]
normalized: [~ [EG [~ [IS_FIREABLE [Phosphofructokinase]]]] | ~ [EG [~ [[IS_FIREABLE [Ru5P_isomerase] | [IS_FIREABLE [Pyruvate_kinase] & [IS_FIREABLE [GAP_dehydrogenase] & IS_FIREABLE [Glutathione_oxidation]]]]]]]]

..................................................................MC time: 2m59.085sec

checking: EF [[IS_FIREABLE [Pyruvate_kinase] | [[[IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [Lactate_dehydrogenase]] | [IS_FIREABLE [generate] & IS_FIREABLE [Transketolase2]]] | ~ [~ [IS_FIREABLE [Enolase]]]]]]
normalized: E [true U [IS_FIREABLE [Pyruvate_kinase] | [IS_FIREABLE [Enolase] | [[IS_FIREABLE [generate] & IS_FIREABLE [Transketolase2]] | [IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [Lactate_dehydrogenase]]]]]]


FORMULA GPPP-PT-C0100N0000010000-CTLFireability-4 CANNOT_COMPUTE

MC time: 0m16.368sec

checking: ~ [[[[IS_FIREABLE [Transketolase2] | EF [IS_FIREABLE [remove]]] & [~ [[IS_FIREABLE [Phosphoglucose_isomerase] & IS_FIREABLE [Aldolase]]] | AF [IS_FIREABLE [Lactate_dehydrogenase]]]] | [A [IS_FIREABLE [Phosphoglucose_isomerase] U IS_FIREABLE [Enolase]] & IS_FIREABLE [TIM_forward]]]]
normalized: ~ [[[IS_FIREABLE [TIM_forward] & [~ [EG [~ [IS_FIREABLE [Enolase]]]] & ~ [E [~ [IS_FIREABLE [Enolase]] U [~ [IS_FIREABLE [Phosphoglucose_isomerase]] & ~ [IS_FIREABLE [Enolase]]]]]]] | [[~ [EG [~ [IS_FIREABLE [Lactate_dehydrogenase]]]] | ~ [[IS_FIREABLE [Phosphoglucose_isomerase] & IS_FIREABLE [Aldolase]]]] & [IS_FIREABLE [Transketolase2] | E [true U IS_FIREABLE [remove]]]]]]


before gc: list nodes free: 1069

after gc: idd nodes used:713762, unused:63286238; list nodes free:547062041
....................................................................MC time: 2m57.189sec

checking: E [EF [IS_FIREABLE [generate]] U [[[IS_FIREABLE [Hexokinase] | IS_FIREABLE [Ru5P_isomerase]] & [IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Pyruvate_kinase]]] | [[IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [G6P_dehydrogenase]] & [IS_FIREABLE [Transketolase1] | IS_FIREABLE [Glutathione_reductose]]]]]
normalized: E [E [true U IS_FIREABLE [generate]] U [[[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Glutathione_reductose]] & [IS_FIREABLE [Pyruvate_kinase] & IS_FIREABLE [G6P_dehydrogenase]]] | [[IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Pyruvate_kinase]] & [IS_FIREABLE [Hexokinase] | IS_FIREABLE [Ru5P_isomerase]]]]]

-> the formula is FALSE

FORMULA GPPP-PT-C0100N0000010000-CTLFireability-2 FALSE TECHNIQUES SEQUENTIAL_PROCESSING DECISION_DIAGRAMS UNFOLDING_TO_PT

MC time: 1m 9.268sec

checking: [[EF [AG [IS_FIREABLE [Aldolase]]] | AG [[[IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Pyruvate_kinase]] | ~ [IS_FIREABLE [Lactate_dehydrogenase]]]]] | [AG [[[IS_FIREABLE [Transketolase1] & IS_FIREABLE [TIM_forward]] & [IS_FIREABLE [TIM_backward] | IS_FIREABLE [Phosphoglycerate_kinase]]]] | IS_FIREABLE [Transaldolase]]]
normalized: [[IS_FIREABLE [Transaldolase] | ~ [E [true U ~ [[[IS_FIREABLE [TIM_backward] | IS_FIREABLE [Phosphoglycerate_kinase]] & [IS_FIREABLE [Transketolase1] & IS_FIREABLE [TIM_forward]]]]]]] | [~ [E [true U ~ [[~ [IS_FIREABLE [Lactate_dehydrogenase]] | [IS_FIREABLE [Ru5P_isomerase] | IS_FIREABLE [Pyruvate_kinase]]]]]] | E [true U ~ [E [true U ~ [IS_FIREABLE [Aldolase]]]]]]]

MC time: 2m50.498sec

checking: ~ [[AF [[[IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [Phosphofructokinase]] | [IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Phosphoglycerate_mutase]]]] | [[IS_FIREABLE [Hexokinase] | [IS_FIREABLE [generate] & [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [G6P_dehydrogenase]]]] | AG [[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Phosphoglycerate_mutase]]]]]]
normalized: ~ [[[~ [E [true U ~ [[IS_FIREABLE [Transketolase1] | IS_FIREABLE [Phosphoglycerate_mutase]]]]] | [IS_FIREABLE [Hexokinase] | [IS_FIREABLE [generate] & [IS_FIREABLE [Ru5P_epimerase] & IS_FIREABLE [G6P_dehydrogenase]]]]] | ~ [EG [~ [[[IS_FIREABLE [Glutathione_oxidation] & IS_FIREABLE [Phosphoglycerate_mutase]] | [IS_FIREABLE [Phosphofructokinase] & IS_FIREABLE [Phosphofructokinase]]]]]]]]

.........................
before gc: list nodes free: 2581

after gc: idd nodes used:2725019, unused:61274981; list nodes free:530012390
..................MC time: 2m31.086sec

checking: EF [AX [[[IS_FIREABLE [Enolase] & IS_FIREABLE [Ru5P_isomerase]] & IS_FIREABLE [Transketolase1]]]]
normalized: E [true U ~ [EX [~ [[IS_FIREABLE [Transketolase1] & [IS_FIREABLE [Enolase] & IS_FIREABLE [Ru5P_isomerase]]]]]]]

.
BK_TIME_CONFINEMENT_REACHED

--------------------
content from stderr:

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok

ptnet_zbdd.cc:255: Boundedness exception: net is not 1-bounded!

check for maximal unmarked siphon
ok
check for constant places
ok
check if there are places and transitions
ok
check if there are transitions without pre-places
ok
check if at least one transition is enabled in m0
ok
check if there are transitions that can never fire
ok


initing FirstDep: 0m 0.001sec


iterations count:11921 (541), effective:2875 (130)

initing FirstDep: 0m 0.000sec

std::bad_alloc

std::bad_alloc

std::bad_alloc

std::bad_alloc


iterations count:42 (1), effective:10 (0)

sat_reach.icc:155: Timeout: after 288 sec


sat_reach.icc:155: Timeout: after 261 sec


sat_reach.icc:155: Timeout: after 237 sec


sat_reach.icc:155: Timeout: after 216 sec


sat_reach.icc:155: Timeout: after 196 sec


net_ddint.h:596: Timeout: after 178 sec

std::bad_alloc


net_ddint.h:596: Timeout: after 176 sec


iterations count:22 (1), effective:0 (0)

iterations count:22 (1), effective:0 (0)

iterations count:38 (1), effective:4 (0)

sat_reach.icc:155: Timeout: after 169 sec


net_ddint.h:596: Timeout: after 150 sec


iterations count:11920 (541), effective:2876 (130)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="GPPP-PT-C0100N0000010000"
export BK_EXAMINATION="CTLFireability"
export BK_TOOL="marcie"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/GPPP-PT-C0100N0000010000.tgz
mv GPPP-PT-C0100N0000010000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool marcie"
echo " Input is GPPP-PT-C0100N0000010000, examination is CTLFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 1"
echo " Run identifier is r021-blw3-149440255300553"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "CTLFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "CTLFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "CTLFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property CTLFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "CTLFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' CTLFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;