fond
Model Checking Contest @ Petri Nets 2017
7th edition, Zaragoza, Spain, June 27, 2017
Execution of r010-csrt-149436129300134
Last Updated
June 27, 2017

About the Execution of ITS-Tools for Angiogenesis-PT-20

Execution Summary
Max Memory
Used (MB)
Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
3906.710 234529.00 470594.00 190.50 T normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
.......
=====================================================================
Generated by BenchKit 2-3254
Executing tool itstools
Input is Angiogenesis-PT-20, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r010-csrt-149436129300134
=====================================================================


--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME Angiogenesis-PT-20-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1496247564666

Using solver YICES2 to compute partial order matrices.
Built C files in :
/home/mcc/execution

its-ctl command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 64 rows 39 cols
invariant : 1'GStarP3kP3 + 1'KdStarGStarP3k + 1'KdStarGStarP3kP3 + 1'KdStarGStarP3kStar + 1'KdStarGStarP3kStarP2 + 1'KdStarGStarP3kStarP3 + 1'KdStarGStarP3kStarP3P2 + 1'P3k= 20
invariant : 1'GStarPgP3 + -1'KdStar + -1'KdStarG + -1'KdStarGP3 + -1'KdStarGStar + -1'KdStarGStarP3 + -1'KdStarGStarP3k + -1'KdStarGStarP3kP3 + -1'KdStarGStarP3kStar + -1'KdStarGStarP3kStarP2 + -1'KdStarGStarP3kStarP3 + -1'KdStarGStarP3kStarP3P2 + 1'Pg= 0
invariant : -1'AktP3 + -1'DAG + -1'DAGE + 1'Gab1 + 1'KdStar + 2'KdStarG + 1'KdStarGP3 + 2'KdStarGStar + 1'KdStarGStarP3 + 2'KdStarGStarP3k + 1'KdStarGStarP3kP3 + 2'KdStarGStarP3kStar + 1'KdStarGStarP3kStarP2 + 1'KdStarGStarP3kStarP3 + 2'KdStarGStarPg + 1'KdStarGStarPgP3 + 2'KdStarGStarPgStar + 1'KdStarGStarPgStarP2 + 1'KdStarGStarPgStarP3 + 1'KdStarPg + 1'KdStarPgStar + -1'Pip2 + -1'Pip3 + 2'Pten + 1'PtP2 + 1'PtP3= 60
invariant : 1'Akt + 1'AktP3 + 1'AktStar= 20
invariant : 1'DAGE + 1'Enz= 20
invariant : -1'Gab1 + -1'GP3 + -1'GStarP3 + -1'GStarP3kP3 + -1'GStarPgP3 + 1'KdStar + 1'KdStarPg + 1'KdStarPgStar + 1'KdStarPgStarP2= 0
invariant : 1'AktP3 + 1'DAG + 1'DAGE + -1'Gab1 + -1'KdStar + -2'KdStarG + -1'KdStarGP3 + -2'KdStarGStar + -1'KdStarGStarP3 + -2'KdStarGStarP3k + -1'KdStarGStarP3kP3 + -2'KdStarGStarP3kStar + -1'KdStarGStarP3kStarP2 + -1'KdStarGStarP3kStarP3 + -2'KdStarGStarPg + -1'KdStarGStarPgP3 + -2'KdStarGStarPgStar + -1'KdStarGStarPgStarP2 + -1'KdStarGStarPgStarP3 + -1'KdStarPg + -1'KdStarPgStar + 1'Pip2 + 1'Pip3 + -1'Pten + 1'PtP3P2= -40
invariant : 1'Gab1 + 1'GP3 + 1'GStarP3 + 1'GStarP3kP3 + 1'GStarPgP3 + 1'KdStarG + 1'KdStarGP3 + 1'KdStarGStar + 1'KdStarGStarP3 + 1'KdStarGStarP3k + 1'KdStarGStarP3kP3 + 1'KdStarGStarP3kStar + 1'KdStarGStarP3kStarP2 + 1'KdStarGStarP3kStarP3 + 1'KdStarGStarP3kStarP3P2 + 1'KdStarGStarPg + 1'KdStarGStarPgP3 + 1'KdStarGStarPgStar + 1'KdStarGStarPgStarP2 + 1'KdStarGStarPgStarP3 + 1'KdStarGStarPgStarP3P2= 20
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Exit code :0
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Exit code :0
Exit code :1
FORMULA Angiogenesis-PT-20-ReachabilityDeadlock-0 TRUE TECHNIQUES PARTIAL_ORDER EXPLICIT LTSMIN SAT_SMT
Detected timeout of ITS tools.

BK_STOP 1496247799195

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.201.v20161025-1711.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
May 31, 2017 4:19:26 PM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
May 31, 2017 4:19:26 PM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 44 ms
May 31, 2017 4:19:26 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 39 places.
May 31, 2017 4:19:26 PM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 64 transitions.
May 31, 2017 4:19:26 PM fr.lip6.move.gal.logic.togal.ToGalTransformer toGal
WARNING: Unknown predicate type in boolean expression fr.lip6.move.gal.logic.impl.DeadlockImpl
May 31, 2017 4:19:26 PM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property Angiogenesis-PT-20-ReachabilityDeadlock-0 is trivially true : it is verified in initial state.
May 31, 2017 4:19:26 PM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 41 ms
May 31, 2017 4:19:26 PM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 9 ms
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 8 place invariants in 15 ms
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 39 variables to be positive in 73 ms
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 64 transitions.
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed :0/64 took 14 ms. Total solver calls (SAT/UNSAT): 16(8/8)
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 278 ms. Total solver calls (SAT/UNSAT): 506(230/276)
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 64 transitions.
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 228 ms. Total solver calls (SAT/UNSAT): 506(258/248)
May 31, 2017 4:19:27 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 64 transitions.
May 31, 2017 4:19:28 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished enabling matrix. took 780 ms. Total solver calls (SAT/UNSAT): 2080(2080/0)
May 31, 2017 4:19:28 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 64 transitions.
May 31, 2017 4:19:38 PM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 10083 ms. Total solver calls (SAT/UNSAT): 375(0/375)
May 31, 2017 4:19:38 PM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 11720ms conformant to PINS in folder :/home/mcc/execution
May 31, 2017 4:23:18 PM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
pins2lts-seq, 0.001: Registering PINS so language module
pins2lts-seq, 0.001: Loading model from ./gal.so
pins2lts-seq, 0.001: library has no initializer
pins2lts-seq, 0.001: loading model GAL
pins2lts-seq, 0.002: completed loading model GAL
pins2lts-seq, 0.002: Initializing POR dependencies: labels 65, guards 64
pins2lts-seq, 0.006: There are 65 state labels and 1 edge labels
pins2lts-seq, 0.006: State length is 39, there are 64 groups
pins2lts-seq, 0.006: Running dfs search strategy
pins2lts-seq, 0.006: Using a tree for state storage
pins2lts-seq, 0.006: Visible groups: 0 / 64, labels: 0 / 65
pins2lts-seq, 0.006: POR cycle proviso: none
pins2lts-seq, 0.189: explored 8586 levels ~10000 states ~42484 transitions
pins2lts-seq, 0.362: explored 16049 levels ~20000 states ~96076 transitions
pins2lts-seq, 0.726: explored 30470 levels ~40000 states ~189416 transitions
pins2lts-seq, 1.469: explored 56627 levels ~80000 states ~374959 transitions
pins2lts-seq, 2.903: explored 105814 levels ~160000 states ~736274 transitions
pins2lts-seq, 5.864: explored 205570 levels ~320000 states ~1518744 transitions
pins2lts-seq, 12.745: explored 406935 levels ~640000 states ~3140004 transitions
pins2lts-seq, 27.293: explored 785709 levels ~1280000 states ~6387811 transitions
pins2lts-seq, 58.715: explored 1539689 levels ~2560000 states ~13075943 transitions
pins2lts-seq, 124.941: explored 3015495 levels ~5120000 states ~26845928 transitions
pins2lts-seq, 219.022:
pins2lts-seq, 219.022: deadlock () found at depth 5024821!
pins2lts-seq, 219.022:
pins2lts-seq, 219.022: exiting now

May 31, 2017 4:23:18 PM fr.lip6.move.gal.itstools.ProcessController forwardStream
WARNING: Stream closed
May 31, 2017 4:23:18 PM fr.lip6.move.gal.itstools.ProcessController$1 run
WARNING: null
May 31, 2017 4:23:18 PM fr.lip6.move.gal.itstools.ProcessController forwardStream
WARNING: Stream closed

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="Angiogenesis-PT-20"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/Angiogenesis-PT-20.tgz
mv Angiogenesis-PT-20 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool itstools"
echo " Input is Angiogenesis-PT-20, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r010-csrt-149436129300134"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;