Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool itstools
Input is S_GPPP-PT-C1000N0000001000, examination is ReachabilityDeadlock
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r110-blw3-149441614700593
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityDeadlock-0

=== Now, execution of the tool begins

BK_START 1496466538138


Using solver YICES2 to compute partial order matrices.
Built C files in :
/home/mcc/execution
its-ctl command run as :

/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ctl-linux64 --gc-threshold 2000000 --quiet -i /home/mcc/execution/ReachabilityDeadlock.pnml.gal -t CGAL -ctl DEADLOCK
No direction supplied, using forward translation only.
Presburger conditions satisfied. Using coverability to approximate state space in K-Induction.
// Phase 1: matrix 22 rows 33 cols
invariant : = 0
invariant : -1'Pi + 1'ATP + 1'NADplus + 1'ADP + -1'Lac= 6000
invariant : 1'NADplus + 1'NADH= 2000
invariant : 1'Pi + 1'Ru5P + 1'Xu5P + 1'R5P + 1'S7P + 1'GAP + 1'E4P + 1'F6P + 1'G6P + 2'FBP + 1'DHAP + 2'_1_3_BPG + -1'ADP + 1'_3PG + 1'_2PG + 1'PEP= 0
invariant : -71'ATP + -71'ADP + -104'start= -284104
invariant : -1'Pi + 1'NADplus + -1'Ru5P + -1'Xu5P + -1'R5P + -1'S7P + -1'GAP + -1'E4P + -1'F6P + -1'G6P + -2'FBP + -1'DHAP + -1'_1_3_BPG + 1'ADP + 1'Pyr= 2000
invariant : 2'GSSG + 1'GSH= 2000
invariant : 1'NADPplus + 1'NADPH= 2000
Running compilation step : CommandLine [args=[gcc, -c, -I/home/mcc/BenchKit//lts_install_dir//include, -I., -std=c99, -fPIC, -O3, model.c], workingDir=/home/mcc/execution]
Exit code :0
Running link step : CommandLine [args=[gcc, -shared, -o, gal.so, model.o], workingDir=/home/mcc/execution]
Exit code :0
Exit code :134
Exit code :255

BK_STOP 1496468899949

--------------------
content from stderr:

+ export BINDIR=/home/mcc/BenchKit/
+ BINDIR=/home/mcc/BenchKit/
++ pwd
+ export MODEL=/home/mcc/execution
+ MODEL=/home/mcc/execution
+ [[ ReachabilityDeadlock = StateSpace ]]
+ /home/mcc/BenchKit//runeclipse.sh /home/mcc/execution ReachabilityDeadlock -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
+ ulimit -s 65536
+ java -Dosgi.requiredJavaVersion=1.6 -Xss8m -Xms40m -Xmx8192m -Declipse.pde.launch=true -Dfile.encoding=UTF-8 -classpath /home/mcc/BenchKit//eclipse/plugins/org.eclipse.equinox.launcher_1.3.201.v20161025-1711.jar org.eclipse.equinox.launcher.Main -application fr.lip6.move.gal.application.pnmcc -data /home/mcc/BenchKit//workspace -os linux -ws gtk -arch x86_64 -nl en_US -consoleLog -pnfolder /home/mcc/execution -examination ReachabilityDeadlock -yices2path /home/mcc/BenchKit//yices/bin/yices -its -ltsminpath /home/mcc/BenchKit//lts_install_dir/ -smt
Jun 03, 2017 5:08:59 AM fr.lip6.move.gal.application.MccTranslator transformPNML
INFO: Parsing pnml file : /home/mcc/execution/model.pnml
Jun 03, 2017 5:08:59 AM fr.lip6.move.gal.nupn.PTNetReader loadFromXML
INFO: Load time of PNML (sax parser for PT used): 42 ms
Jun 03, 2017 5:08:59 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 33 places.
Jun 03, 2017 5:08:59 AM fr.lip6.move.gal.pnml.togal.PTGALTransformer handlePage
INFO: Transformed 22 transitions.
Jun 03, 2017 5:08:59 AM fr.lip6.move.gal.logic.togal.ToGalTransformer toGal
WARNING: Unknown predicate type in boolean expression fr.lip6.move.gal.logic.impl.DeadlockImpl
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.instantiate.PropertySimplifier rewriteWithInitialState
INFO: Reachable property GPPP-PT-C1000N0000001000-ReachabilityDeadlock-0 is trivially true : it is verified in initial state.
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.instantiate.GALRewriter flatten
INFO: Flatten gal took : 40 ms
Jun 03, 2017 5:09:00 AM fr.lip6.move.serialization.SerializationUtil systemToFile
INFO: Time to serialize gal into /home/mcc/execution/ReachabilityDeadlock.pnml.gal : 8 ms
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver computeAndDeclareInvariants
INFO: Computed 8 place invariants in 18 ms
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.KInductionSolver init
INFO: Proved 33 variables to be positive in 84 ms
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may disable matrix : 22 transitions.
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed :0/22 took 4 ms. Total solver calls (SAT/UNSAT): 4(2/2)
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete disable matrix. took 62 ms. Total solver calls (SAT/UNSAT): 95(25/70)
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeAblingMatrix
INFO: Computing symmetric may enable matrix : 22 transitions.
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Complete enable matrix. took 60 ms. Total solver calls (SAT/UNSAT): 95(32/63)
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeCoEnablingMatrix
INFO: Computing symmetric co enabling matrix : 22 transitions.
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Finished enabling matrix. took 109 ms. Total solver calls (SAT/UNSAT): 253(119/134)
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver computeDoNotAccord
INFO: Computing Do-Not-Accords matrix : 22 transitions.
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2smt.bmc.NecessaryEnablingsolver printStats
INFO: Computation of Completed DNA matrix. took 273 ms. Total solver calls (SAT/UNSAT): 30(0/30)
Jun 03, 2017 5:09:00 AM fr.lip6.move.gal.gal2pins.Gal2PinsTransformerNext transform
INFO: Built C files in 779ms conformant to PINS in folder :/home/mcc/execution
Jun 03, 2017 5:19:36 AM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit/eclipse/plugins/fr.lip6.move.gal.itstools.binaries_1.0.0.201705302212/bin/its-ctl-linux64, --gc-threshold, 2000000, --quiet, -i, /home/mcc/execution/ReachabilityDeadlock.pnml.gal, -t, CGAL, -ctl, DEADLOCK], workingDir=/home/mcc/execution]
terminate called after throwing an instance of 'std::bad_alloc'
what(): std::bad_alloc

Jun 03, 2017 5:48:19 AM fr.lip6.move.gal.itstools.Runner runTool
INFO: Standard error output from running tool CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
pins2lts-seq, 0.000: Registering PINS so language module
pins2lts-seq, 0.000: Loading model from ./gal.so
pins2lts-seq, 0.001: library has no initializer
pins2lts-seq, 0.001: loading model GAL
pins2lts-seq, 0.001: completed loading model GAL
pins2lts-seq, 0.001: Initializing POR dependencies: labels 23, guards 22
pins2lts-seq, 0.001: There are 23 state labels and 1 edge labels
pins2lts-seq, 0.001: State length is 33, there are 22 groups
pins2lts-seq, 0.001: Running dfs search strategy
pins2lts-seq, 0.001: Using a tree for state storage
pins2lts-seq, 0.001: Visible groups: 0 / 22, labels: 0 / 23
pins2lts-seq, 0.001: POR cycle proviso: none
pins2lts-seq, 0.042: explored 10000 levels ~10000 states ~13999 transitions
pins2lts-seq, 0.082: explored 20000 levels ~20000 states ~23999 transitions
pins2lts-seq, 0.169: explored 27998 levels ~40000 states ~44002 transitions
pins2lts-seq, 0.355: explored 27998 levels ~80000 states ~84012 transitions
pins2lts-seq, 0.731: explored 27998 levels ~160000 states ~164179 transitions
pins2lts-seq, 1.521: explored 27998 levels ~320000 states ~324819 transitions
pins2lts-seq, 3.170: explored 27998 levels ~640000 states ~646091 transitions
pins2lts-seq, 6.614: explored 27998 levels ~1280000 states ~1288643 transitions
pins2lts-seq, 13.153: explored 27998 levels ~2560000 states ~2573731 transitions
pins2lts-seq, 26.322: explored 27998 levels ~5120000 states ~5146547 transitions
pins2lts-seq, 52.767: explored 27998 levels ~10240000 states ~10410873 transitions
pins2lts-seq, 108.388: explored 27998 levels ~20480000 states ~20897927 transitions
pins2lts-seq, 220.657: explored 27998 levels ~40960000 states ~41750622 transitions
pins2lts-seq, 457.408: explored 27998 levels ~81920000 states ~83291078 transitions
pins2lts-seq, 936.167: explored 27998 levels ~163840000 states ~166122686 transitions
pins2lts-seq, 1900.417: explored 27998 levels ~327680000 states ~331405234 transitions
pins2lts-seq, 2357.226, ** error **: out of memory trying to resize to 4294967296

LTS min runner thread failed on error :java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
Status WARNING: fr.lip6.move.gal code=255 pins2lts-seq, 0.000: Registering PINS so language module
pins2lts-seq, 0.000: Loading model from ./gal.so
pins2lts-seq, 0.001: library has no initializer
pins2lts-seq, 0.001: loading model GAL
pins2lts-seq, 0.001: completed loading model GAL
pins2lts-seq, 0.001: Initializing POR dependencies: labels 23, guards 22
pins2lts-seq, 0.001: There are 23 state labels and 1 edge labels
pins2lts-seq, 0.001: State length is 33, there are 22 groups
pins2lts-seq, 0.001: Running dfs search strategy
pins2lts-seq, 0.001: Using a tree for state storage
pins2lts-seq, 0.001: Visible groups: 0 / 22, labels: 0 / 23
pins2lts-seq, 0.001: POR cycle proviso: none
pins2lts-seq, 0.042: explored 10000 levels ~10000 states ~13999 transitions
pins2lts-seq, 0.082: explored 20000 levels ~20000 states ~23999 transitions
pins2lts-seq, 0.169: explored 27998 levels ~40000 states ~44002 transitions
pins2lts-seq, 0.355: explored 27998 levels ~80000 states ~84012 transitions
pins2lts-seq, 0.731: explored 27998 levels ~160000 states ~164179 transitions
pins2lts-seq, 1.521: explored 27998 levels ~320000 states ~324819 transitions
pins2lts-seq, 3.170: explored 27998 levels ~640000 states ~646091 transitions
pins2lts-seq, 6.614: explored 27998 levels ~1280000 states ~1288643 transitions
pins2lts-seq, 13.153: explored 27998 levels ~2560000 states ~2573731 transitions
pins2lts-seq, 26.322: explored 27998 levels ~5120000 states ~5146547 transitions
pins2lts-seq, 52.767: explored 27998 levels ~10240000 states ~10410873 transitions
pins2lts-seq, 108.388: explored 27998 levels ~20480000 states ~20897927 transitions
pins2lts-seq, 220.657: explored 27998 levels ~40960000 states ~41750622 transitions
pins2lts-seq, 457.408: explored 27998 levels ~81920000 states ~83291078 transitions
pins2lts-seq, 936.167: explored 27998 levels ~163840000 states ~166122686 transitions
pins2lts-seq, 1900.417: explored 27998 levels ~327680000 states ~331405234 transitions
pins2lts-seq, 2357.226, ** error **: out of memory trying to resize to 4294967296
null
java.lang.RuntimeException: Unexpected exception when executing ltsmin :CommandLine [args=[/home/mcc/BenchKit//lts_install_dir//bin/pins2lts-seq, ./gal.so, -p, --pins-guards, --when, -d], workingDir=/home/mcc/execution]
Status WARNING: fr.lip6.move.gal code=255 pins2lts-seq, 0.000: Registering PINS so language module
pins2lts-seq, 0.000: Loading model from ./gal.so
pins2lts-seq, 0.001: library has no initializer
pins2lts-seq, 0.001: loading model GAL
pins2lts-seq, 0.001: completed loading model GAL
pins2lts-seq, 0.001: Initializing POR dependencies: labels 23, guards 22
pins2lts-seq, 0.001: There are 23 state labels and 1 edge labels
pins2lts-seq, 0.001: State length is 33, there are 22 groups
pins2lts-seq, 0.001: Running dfs search strategy
pins2lts-seq, 0.001: Using a tree for state storage
pins2lts-seq, 0.001: Visible groups: 0 / 22, labels: 0 / 23
pins2lts-seq, 0.001: POR cycle proviso: none
pins2lts-seq, 0.042: explored 10000 levels ~10000 states ~13999 transitions
pins2lts-seq, 0.082: explored 20000 levels ~20000 states ~23999 transitions
pins2lts-seq, 0.169: explored 27998 levels ~40000 states ~44002 transitions
pins2lts-seq, 0.355: explored 27998 levels ~80000 states ~84012 transitions
pins2lts-seq, 0.731: explored 27998 levels ~160000 states ~164179 transitions
pins2lts-seq, 1.521: explored 27998 levels ~320000 states ~324819 transitions
pins2lts-seq, 3.170: explored 27998 levels ~640000 states ~646091 transitions
pins2lts-seq, 6.614: explored 27998 levels ~1280000 states ~1288643 transitions
pins2lts-seq, 13.153: explored 27998 levels ~2560000 states ~2573731 transitions
pins2lts-seq, 26.322: explored 27998 levels ~5120000 states ~5146547 transitions
pins2lts-seq, 52.767: explored 27998 levels ~10240000 states ~10410873 transitions
pins2lts-seq, 108.388: explored 27998 levels ~20480000 states ~20897927 transitions
pins2lts-seq, 220.657: explored 27998 levels ~40960000 states ~41750622 transitions
pins2lts-seq, 457.408: explored 27998 levels ~81920000 states ~83291078 transitions
pins2lts-seq, 936.167: explored 27998 levels ~163840000 states ~166122686 transitions
pins2lts-seq, 1900.417: explored 27998 levels ~327680000 states ~331405234 transitions
pins2lts-seq, 2357.226, ** error **: out of memory trying to resize to 4294967296
null
at fr.lip6.move.gal.application.LTSminRunner$1.run(LTSminRunner.java:130)
at java.lang.Thread.run(Thread.java:748)

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_GPPP-PT-C1000N0000001000"
export BK_EXAMINATION="ReachabilityDeadlock"
export BK_TOOL="itstools"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_GPPP-PT-C1000N0000001000.tgz
mv S_GPPP-PT-C1000N0000001000 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool itstools"
echo " Input is S_GPPP-PT-C1000N0000001000, examination is ReachabilityDeadlock"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r110-blw3-149441614700593"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityDeadlock" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityDeadlock" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityDeadlock.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityDeadlock.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityDeadlock.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityDeadlock.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;