About the Execution of LoLA for S_GPPP-PT-C1000N0000001000
| Execution Summary | |||||
| Max Memory Used (MB) |
Time wait (ms) | CPU Usage (ms) | I/O Wait (ms) | Computed Result | Execution Status |
| 15951.520 | 507841.00 | 1191643.00 | 6995.10 | FTF?FFTT?FTTTFFT | normal |
Execution Chart
We display below the execution chart for this examination (boot time has been removed).
Trace from the execution
Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool lola
Input is S_GPPP-PT-C1000N0000001000, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r108-blw3-149441612600594
=====================================================================
--------------------
content from stdout:
=== Data for post analysis generated by BenchKit (invocation template)
The expected result is a vector of booleans
BOOL_VECTOR
here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C1000N0000001000-ReachabilityFireability-9
=== Now, execution of the tool begins
BK_START 1496401077370
Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
S_GPPP-PT-C1000N0000001000: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete
checking for too many tokens
===========================================================================================
S_GPPP-PT-C1000N0000001000: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
ReachabilityFireability @ S_GPPP-PT-C1000N0000001000 @ 3540 seconds
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C1000N0000001000-ReachabilityFireability.task
lola: A (G ((NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Transketolase2)) OR FIREABLE(TIM_backward)))) : E (F (FIREABLE(Enolase))) : A (G ((NOT FIREABLE(Phosphofructokinase) OR NOT FIREABLE(Transaldolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Transaldolase)) OR NOT FIREABLE(Phosphoglycerate_mutase)))) : E (F ((FIREABLE(GAP_dehydrogenase) AND FIREABLE(Transketolase1) AND FIREABLE(Ru5P_isomerase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(GAP_dehydrogenase) OR (NOT FIREABLE(Transketolase1) AND NOT FIREABLE(Phosphoclucose_isomerase)))))) : A (G (())) : E (F ((NOT FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Hexokinase) AND FIREABLE(Enolase) AND (FIREABLE(generate) OR FIREABLE(Glutathione_reductose))))) : E (F (((((FIREABLE(Transaldolase) OR FIREABLE(Ru5P_epimerase)) AND FIREABLE(Glutathione_reductose)) OR (FIREABLE(remove) AND (FIREABLE(Ru5P_epimerase) OR FIREABLE(TIM_forward)))) AND FIREABLE(Pyruvate_kinase)))) : A (G ((NOT FIREABLE(Enolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND (FIREABLE(G6P_dehydrogenase) OR FIREABLE(Pyruvate_kinase)))))) : A (G (((NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Phosphoclucose_isomerase)) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(Hexokinase)))) : E (F (FIREABLE(Phosphoglycerate_mutase))) : A (G ((((FIREABLE(Hexokinase) OR FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Phosphoglycerate_mutase))) OR NOT FIREABLE(G6P_dehydrogenase)))) : E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Phosphofructokinase) AND ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Aldolase) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transaldolase)) OR FIREABLE(remove))))) : A (G (((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Ru5P_isomerase) OR (FIREABLE(Aldolase) AND NOT FIREABLE(TIM_backward))) AND (NOT FIREABLE(Transketolase2) OR FIREABLE(Transketolase1) OR FIREABLE(Phosphoglycerate_kinase))))) : A (G (((FIREABLE(Glutathione_oxidation) AND FIREABLE(Enolase)) OR NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(G6P_dehydrogenase)) OR FIREABLE(TIM_forward) OR FIREABLE(GAP_dehydrogenase) OR FIREABLE(TIM_backward)))) : A (G (())) : E (F ((((FIREABLE(Glutathione_oxidation) AND FIREABLE(generate)) OR FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Phosphoclucose_isomerase))) AND NOT FIREABLE(Transaldolase))))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Transketolase2)) OR FIREABLE(TIM_backward))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 10 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: lola: state equation: calling and running sara
========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Enolase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Phosphofructokinase) OR NOT FIREABLE(Transaldolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Transaldolase)) OR NOT FIREABLE(Phosphoglycerate_mutase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 17 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-2.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability.sara.
sara: 1: error near '': syntax error, unexpected $end, expecting PROBLEM
sara: error while parsing the sara problem file -- aborting [#05]
sara: see manual for a documentation of this error
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-2.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 2979787 markings, 8761553 edges, 595957 markings/sec, 0 secs
lola: sara is running 5 secs || 5850876 markings, 17295560 edges, 574218 markings/sec, 5 secs
lola: sara is running 10 secs || 8686639 markings, 25719151 edges, 567153 markings/sec, 10 secs
lola: sara is running 15 secs || 11417477 markings, 33849771 edges, 546168 markings/sec, 15 secs
lola: sara is running 20 secs || 14147618 markings, 41967294 edges, 546028 markings/sec, 20 secs
lola: sara is running 25 secs || 16888903 markings, 50127124 edges, 548257 markings/sec, 25 secs
lola: sara is running 30 secs || 19677654 markings, 58433759 edges, 557750 markings/sec, 30 secs
lola: sara is running 35 secs || 22448632 markings, 66688177 edges, 554196 markings/sec, 35 secs
lola: sara is running 40 secs || 25157769 markings, 74754010 edges, 541827 markings/sec, 40 secs
lola: sara is running 45 secs || 27804195 markings, 82628576 edges, 529285 markings/sec, 45 secs
lola: sara is running 50 secs || 30445480 markings, 90498831 edges, 528257 markings/sec, 50 secs
lola: sara is running 55 secs || 33072613 markings, 98332364 edges, 525427 markings/sec, 55 secs
lola: sara is running 60 secs || 35718768 markings, 106211979 edges, 529231 markings/sec, 60 secs
lola: sara is running 65 secs || 38334824 markings, 113996737 edges, 523211 markings/sec, 65 secs
lola: sara is running 70 secs || 40924811 markings, 121720608 edges, 517997 markings/sec, 70 secs
lola: sara is running 75 secs || 43572614 markings, 129601572 edges, 529561 markings/sec, 75 secs
lola: sara is running 80 secs || 46196188 markings, 137418802 edges, 524715 markings/sec, 80 secs
lola: sara is running 85 secs || 48821210 markings, 145245274 edges, 525004 markings/sec, 85 secs
lola: sara is running 90 secs || 51466372 markings, 153112378 edges, 529032 markings/sec, 90 secs
lola: sara is running 95 secs || 54023450 markings, 160731412 edges, 511416 markings/sec, 95 secs
lola: sara is running 100 secs || 56648858 markings, 168556979 edges, 525082 markings/sec, 100 secs
lola: sara is running 105 secs || 59061960 markings, 175770243 edges, 482620 markings/sec, 105 secs
lola: sara is running 110 secs || 61647750 markings, 183456654 edges, 517158 markings/sec, 110 secs
lola: sara is running 115 secs || 64281321 markings, 191295419 edges, 526714 markings/sec, 115 secs
lola: sara is running 120 secs || 66925385 markings, 199190679 edges, 528813 markings/sec, 120 secs
lola: sara is running 125 secs || 69611315 markings, 207183619 edges, 537186 markings/sec, 125 secs
lola: sara is running 130 secs || 72264405 markings, 215113978 edges, 530618 markings/sec, 130 secs
lola: sara is running 135 secs || 74942110 markings, 223061500 edges, 535541 markings/sec, 135 secs
lola: sara is running 140 secs || 77594420 markings, 230967161 edges, 530462 markings/sec, 140 secs
lola: sara is running 145 secs || 80250740 markings, 238886804 edges, 531264 markings/sec, 145 secs
lola: sara is running 150 secs || 82885783 markings, 246742575 edges, 527009 markings/sec, 150 secs
lola: sara is running 155 secs || 85489797 markings, 254506868 edges, 520803 markings/sec, 155 secs
lola: sara is running 160 secs || 88059776 markings, 262163354 edges, 513996 markings/sec, 160 secs
lola: sara is running 165 secs || 90634236 markings, 269828066 edges, 514892 markings/sec, 165 secs
lola: sara is running 170 secs || 93170562 markings, 277388780 edges, 507265 markings/sec, 170 secs
lola: sara is running 175 secs || 95698679 markings, 284945191 edges, 505623 markings/sec, 175 secs
lola: sara is running 180 secs || 98221255 markings, 292471376 edges, 504515 markings/sec, 180 secs
lola: sara is running 185 secs || 100708660 markings, 299879981 edges, 497481 markings/sec, 185 secs
lola: sara is running 190 secs || 103224211 markings, 307370143 edges, 503110 markings/sec, 190 secs
lola: sara is running 195 secs || 105776351 markings, 314969792 edges, 510428 markings/sec, 195 secs
lola: sara is running 200 secs || 108276933 markings, 322447718 edges, 500116 markings/sec, 200 secs
lola: sara is running 205 secs || 110815894 markings, 329995577 edges, 507792 markings/sec, 205 secs
lola: sara is running 210 secs || 113338672 markings, 337505303 edges, 504556 markings/sec, 210 secs
lola: sara is running 215 secs || 115866762 markings, 345037551 edges, 505618 markings/sec, 215 secs
lola: sara is running 220 secs || 118451525 markings, 352732470 edges, 516953 markings/sec, 220 secs
lola: sara is running 225 secs || 120935482 markings, 360158091 edges, 496791 markings/sec, 225 secs
lola: sara is running 230 secs || 123480309 markings, 367726328 edges, 508965 markings/sec, 230 secs
lola: sara is running 235 secs || 125934618 markings, 375081629 edges, 490862 markings/sec, 235 secs
lola: sara is running 240 secs || 128439441 markings, 382512597 edges, 500965 markings/sec, 240 secs
lola: sara is running 245 secs || 130946152 markings, 389997290 edges, 501342 markings/sec, 245 secs
lola: local time limit reached - aborting
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 3 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(GAP_dehydrogenase) AND FIREABLE(Transketolase1) AND FIREABLE(Ru5P_isomerase) AND (FIREABLE(remove) OR FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(GAP_dehydrogenase) OR (NOT FIREABLE(Transketolase1) AND NOT FIREABLE(Phosphoclucose_isomerase))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 19 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-3.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-3.sara.
sara: place or transition ordering is non-deterministic
lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: subprocess 4 will run for 273 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C1000N0000001000-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: ========================================
lola: subprocess 5 will run for 298 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Hexokinase) AND FIREABLE(Enolase) AND (FIREABLE(generate) OR FIREABLE(Glutathione_reductose)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 18 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-5.sara
lola: ========================================
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-5.sara.
sara: place or transition ordering is non-deterministic
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 6 will run for 328 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (((((FIREABLE(Transaldolase) OR FIREABLE(Ru5P_epimerase)) AND FIREABLE(Glutathione_reductose)) OR (FIREABLE(remove) AND (FIREABLE(Ru5P_epimerase) OR FIREABLE(TIM_forward)))) AND FIREABLE(Pyruvate_kinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 24 literals and 4 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-6.sara
lola: produced by: state space
lola: The predicate is reachable.
lola: lola: state equation: calling and running sara========================================
lola: subprocess 7 will run for 365 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Enolase) OR (NOT FIREABLE(remove) AND NOT FIREABLE(Phosphoglycerate_mutase) AND (FIREABLE(G6P_dehydrogenase) OR FIREABLE(Pyruvate_kinase))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 23 literals and 8 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-7.sara
lola: ========================================
lola: subprocess 8 will run for 410 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Phosphoglycerate_mutase) AND NOT FIREABLE(Phosphoclucose_isomerase)) OR NOT FIREABLE(GAP_dehydrogenase) OR FIREABLE(Hexokinase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: sara: using a prefix tree store (--store=prefix)
try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-6.sara.
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 26 literals and 4 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-8.sara
sara: place or transition ordering is non-deterministic
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-8.sara.
sara: place or transition ordering is non-deterministic
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 9 will run for 469 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-9.sara
lola: The predicate is reachable.
lola: lola: subprocess 10 will run for 547 seconds at most (--localtimelimit=-1)
========================================
lola: ========================================
lola: ...considering subproblem: A (G ((((FIREABLE(Hexokinase) OR FIREABLE(Phosphoglycerate_kinase) OR FIREABLE(Phosphoglycerate_mutase))) OR NOT FIREABLE(G6P_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 24 literals and 4 conjunctive subformulas
lola: state equation: calling and running sara
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-10.sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-9.sara.
sara: place or transition ordering is non-deterministic
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 11 will run for 657 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoglycerate_mutase) AND FIREABLE(Phosphofructokinase) AND ((FIREABLE(Pyruvate_kinase) AND FIREABLE(Aldolase) AND FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transaldolase)) OR FIREABLE(remove)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 16 literals and 2 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C1000N0000001000-ReachabilityFireability-11.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C1000N0000001000-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 3933018 markings, 8474216 edges, 786604 markings/sec, 0 secs
lola: sara is running 5 secs || 7770931 markings, 16799353 edges, 767583 markings/sec, 5 secs
lola: sara is running 10 secs || 11571228 markings, 25047768 edges, 760059 markings/sec, 10 secs
lola: sara is running 15 secs || 15367911 markings, 33290860 edges, 759337 markings/sec, 15 secs
lola: sara is running 20 secs || 19170679 markings, 41547938 edges, 760554 markings/sec, 20 secs
lola: sara is running 25 secs || 22963166 markings, 49785284 edges, 758497 markings/sec, 25 secs
lola: sara is running 30 secs || 26753207 markings, 58017281 edges, 758008 markings/sec, 30 secs
lola: sara is running 35 secs || 30522417 markings, 66204562 edges, 753842 markings/sec, 35 secs
lola: sara is running 40 secs || 34288065 markings, 74385716 edges, 753130 markings/sec, 40 secs
lola: sara is running 45 secs || 38036482 markings, 82528890 edges, 749683 markings/sec, 45 secs
lola: sara is running 50 secs || 41770997 markings, 90641715 edges, 746903 markings/sec, 50 secs
lola: sara is running 55 secs || 45504251 markings, 98755109 edges, 746651 markings/sec, 55 secs
lola: sara is running 60 secs || 49221627 markings, 106831700 edges, 743475 markings/sec, 60 secs
lola: sara is running 65 secs || 52942066 markings, 114916043 edges, 744088 markings/sec, 65 secs
lola: sara is running 70 secs || 56665825 markings, 123005795 edges, 744752 markings/sec, 70 secs
lola: sara is running 75 secs || 60374593 markings, 131067465 edges, 741754 markings/sec, 75 secs
lola: sara is running 80 secs || 64086928 markings, 139132088 edges, 742467 markings/sec, 80 secs
lola: sara is running 85 secs || 67795149 markings, 147192973 edges, 741644 markings/sec, 85 secs
lola: sara is running 90 secs || 71505635 markings, 155253945 edges, 742097 markings/sec, 90 secs
lola: sara is running 95 secs || 75204924 markings, 163292574 edges, 739858 markings/sec, 95 secs
lola: sara is running 100 secs || 78900230 markings, 171324864 edges, 739061 markings/sec, 100 secs
lola: sara is running 105 secs || 82592144 markings, 179348592 edges, 738383 markings/sec, 105 secs
lola: sara is running 110 secs || 86286758 markings, 187377062 edges, 738923 markings/sec, 110 secs
lola: sara is running 115 secs || 89970354 markings, 195384199 edges, 736719 markings/sec, 115 secs
lola: sara is running 120 secs || 93650142 markings, 203381995 edges, 735958 markings/sec, 120 secs
lola: sara is running 125 secs || 97328018 markings, 211374604 edges, 735575 markings/sec, 125 secs
lola: sara is running 130 secs || 101020919 markings, 219399091 edges, 738580 markings/sec, 130 secs
lola: sara is running 135 secs || 104727987 markings, 227457787 edges, 741414 markings/sec, 135 secs
lola: sara is running 140 secs || 108399340 markings, 235437454 edges, 734271 markings/sec, 140 secs
lola: sara is running 145 secs || 112078775 markings, 243433943 edges, 735887 markings/sec, 145 secs
lola: sara is running 150 secs || 115791244 markings, 251501862 edges, 742494 markings/sec, 150 secs
lola: sara is running 155 secs || 119511029 markings, 259589395 edges, 743957 markings/sec, 155 secs
lola: sara is running 160 secs || 123254347 markings, 267723164 edges, 748664 markings/sec, 160 secs
lola: sara is running 165 secs || 126991641 markings, 275847470 edges, 747459 markings/sec, 165 secs
lola: sara is running 170 secs || 130732661 markings, 283979206 edges, 748204 markings/sec, 170 secs
lola: sara is running 175 secs || 134402858 markings, 291955197 edges, 734039 markings/sec, 175 secs
lola: sara is running 180 secs || 138067070 markings, 299922141 edges, 732842 markings/sec, 180 secs
lola: sara is running 185 secs || 141723815 markings, 307867279 edges, 731349 markings/sec, 185 secs
lola: sara is running 190 secs || 145372039 markings, 315797929 edges, 729645 markings/sec, 190 secs
lola: sara is running 195 secs || 149038638 markings, 323768178 edges, 733320 markings/sec, 195 secs
lola: sara is running 200 secs || 152706112 markings, 331739715 edges, 733495 markings/sec, 200 secs
lola: sara is running 205 secs || 156397826 markings, 339763680 edges, 738343 markings/sec, 205 secs
lola: sara is running 210 secs || 160059608 markings, 347726644 edges, 732356 markings/sec, 210 secs
lola: sara is running 215 secs || 163710175 markings, 355659375 edges, 730113 markings/sec, 215 secs
lola: sara is running 220 secs || 166894958 markings, 362582566 edges, 636957 markings/sec, 220 secs
lola: sara is running 225 secs || 166903889 markings, 362602107 edges, 1786 markings/sec, 225 secs
lola: sara is running 230 secs || 166927035 markings, 362652762 edges, 4629 markings/sec, 230 secs
lola: sara is running 235 secs || 166985841 markings, 362781460 edges, 11761 markings/sec, 235 secs
lola: sara is running 240 secs || 166995905 markings, 362803485 edges, 2013 markings/sec, 240 secs
lola: sara is running 245 secs || 167089144 markings, 363002322 edges, 18648 markings/sec, 245 secs
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 12 will run for 758 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Ru5P_isomerase) OR (FIREABLE(Aldolase) AND NOT FIREABLE(TIM_backward))) AND (NOT FIREABLE(Transketolase2) OR FIREABLE(Transketolase1) OR FIREABLE(Phosphoglycerate_kinase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 12 literals and 3 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: subprocess 13 will run for 1010 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((FIREABLE(Glutathione_oxidation) AND FIREABLE(Enolase)) OR NOT FIREABLE(Transketolase2) OR (NOT FIREABLE(Lactate_dehydrogenase) AND NOT FIREABLE(G6P_dehydrogenase)) OR FIREABLE(TIM_forward) OR FIREABLE(GAP_dehydrogenase) OR FIREABLE(TIM_backward))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: ========================================
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 136 literals and 16 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 14 will run for 1516 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (()))
lola: ========================================
lola: SUBTASK
lola: checking initial satisfaction
lola: processed formula: TRUE
lola: processed formula length: 4
lola: 3 rewrites
lola: formula mentions 0 of 33 places; total mentions: 0
lola: closed formula file GPPP-PT-C1000N0000001000-ReachabilityFireability.task
lola: processed formula with 0 atomic propositions
lola: RUNNING
lola: SUBRESULT
lola: result: yes
lola: produced by: preprocessing
lola: The net satisfies the property already in its initial state.
lola: ========================================
lola: subprocess 15 will run for 3032 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((((FIREABLE(Glutathione_oxidation) AND FIREABLE(generate)) OR FIREABLE(Phosphoglycerate_mutase) OR (FIREABLE(Pyruvate_kinase) AND NOT FIREABLE(Phosphoclucose_isomerase))) AND NOT FIREABLE(Transaldolase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 39 literals and 12 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: RESULT
lola:
SUMMARY: no yes unknown no yes yes yes no no yes no unknown no no yes yes
lola: ========================================
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-0 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-1 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-2 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-3 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-4 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-5 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-6 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-7 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-8 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-9 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-10 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-12 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-13 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-14 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C1000N0000001000-ReachabilityFireability-15 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----
BK_STOP 1496401585211
--------------------
content from stderr:
----- Start make prepare stderr -----
----- Start make result stderr -----
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stderr -----
Sequence of Actions to be Executed by the VM
This is useful if one wants to reexecute the tool in the VM from the submitted image disk.
set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_GPPP-PT-C1000N0000001000"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"
# this is specific to your benchmark or test
export BIN_DIR="$HOME/BenchKit/bin"
# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi
tar xzf /home/mcc/BenchKit/INPUTS/S_GPPP-PT-C1000N0000001000.tgz
mv S_GPPP-PT-C1000N0000001000 execution
# this is for BenchKit: explicit launching of the test
cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool lola"
echo " Input is S_GPPP-PT-C1000N0000001000, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r108-blw3-149441612600594"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;