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Model Checking Contest @ Petri Nets 2017
7th edition, Zaragoza, Spain, June 27, 2017
Execution of r108-blw3-149441612600540
Last Updated
June 27, 2017

About the Execution of LoLA for S_GPPP-PT-C0100N0000000100

Execution Summary
Max Memory
Used (MB)		 Time wait (ms) CPU Usage (ms) I/O Wait (ms) Computed Result Execution
Status
15952.820 582753.00 1136625.00 3673.50 TFT?TTTTFTFFFTTF normal

Execution Chart

We display below the execution chart for this examination (boot time has been removed).

Trace from the execution

Waiting for the VM to be ready (probing ssh)
......
=====================================================================
Generated by BenchKit 2-3254
Executing tool lola
Input is S_GPPP-PT-C0100N0000000100, examination is ReachabilityFireability
Time confinement is 3600 seconds
Memory confinement is 16384 MBytes
Number of cores is 4
Run identifier is r108-blw3-149441612600540
=====================================================================

--------------------
content from stdout:

=== Data for post analysis generated by BenchKit (invocation template)

The expected result is a vector of booleans
BOOL_VECTOR

here is the order used to build the result vector(from text file)
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-0
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-1
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-10
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-11
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-12
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-13
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-14
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-15
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-2
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-3
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-4
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-5
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-6
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-7
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-8
FORMULA_NAME GPPP-PT-C0100N0000000100-ReachabilityFireability-9

=== Now, execution of the tool begins

BK_START 1496395063196


Time: 3600 - MCC
----- Start make prepare stdout -----
===========================================================================================
S_GPPP-PT-C0100N0000000100: translating PT Petri net model.pnml into LoLA format
===========================================================================================
translating PT Petri net complete


checking for too many tokens
===========================================================================================
S_GPPP-PT-C0100N0000000100: translating PT formula ReachabilityFireability into LoLA format
===========================================================================================
translating formula complete
touch formulae;
----- Start make result stdout -----
ReachabilityFireability @ S_GPPP-PT-C0100N0000000100 @ 3540 seconds
----- Start make result stdout -----
lola: LoLA will run for 3540 seconds at most (--timelimit)
lola: NET
lola: reading net from model.pnml.lola
lola: finished parsing
lola: closed net file model.pnml.lola
lola: 55/65536 symbol table entries, 0 collisions
lola: preprocessing...
lola: finding significant places
lola: 33 places, 22 transitions, 21 significant places
lola: computing forward-conflicting sets
lola: computing back-conflicting sets
lola: 30 transition conflict sets
lola: TASK
lola: reading formula from GPPP-PT-C0100N0000000100-ReachabilityFireability.task
lola: E (F (FIREABLE(Lactate_dehydrogenase))) : A (G (((NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Hexokinase) AND NOT FIREABLE(Phosphoglycerate_kinase)) OR ((NOT FIREABLE(Lactate_dehydrogenase) OR NOT FIREABLE(Phosphoglycerate_kinase)) AND NOT FIREABLE(Pyruvate_kinase))))) : A (G (NOT FIREABLE(Transketolase2))) : E (F (FIREABLE(Pyruvate_kinase))) : E (F ((NOT FIREABLE(Aldolase) AND FIREABLE(remove)))) : A (G (((FIREABLE(Aldolase)) AND NOT FIREABLE(remove)))) : A (G ((((NOT FIREABLE(Enolase) OR NOT FIREABLE(TIM_forward)) AND FIREABLE(Transketolase1)) OR ((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Phosphoglycerate_mutase)) AND (NOT FIREABLE(TIM_backward) OR NOT FIREABLE(generate)))))) : E (F (FIREABLE(Phosphoglycerate_mutase))) : E (F ((((NOT FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Ru5P_isomerase)) OR ((FIREABLE(Glutathione_oxidation) OR FIREABLE(Transketolase2)) AND NOT FIREABLE(Phosphoglycerate_mutase))) AND ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Transaldolase)) OR (FIREABLE(remove) AND FIREABLE(Lactate_dehydrogenase)))))) : A (G (((FIREABLE(Transaldolase) AND FIREABLE(remove) AND FIREABLE(Glutathione_reductose) AND FIREABLE(Phosphofructokinase)) OR (NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Phosphoglycerate_mutase)) OR FIREABLE(Glutathione_reductose)))) : E (F ((FIREABLE(Aldolase) AND FIREABLE(Enolase) AND NOT FIREABLE(TIM_backward) AND (NOT FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(GAP_dehydrogenase))))) : E (F ((FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transaldolase) AND FIREABLE(Aldolase) AND ((FIREABLE(remove) AND FIREABLE(Phosphoglycerate_kinase)) OR (FIREABLE(Enolase) AND FIREABLE(TIM_forward))) AND (FIREABLE(generate) OR FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Enolase))))) : E (F ((NOT FIREABLE(Hexokinase) AND FIREABLE(Phosphofructokinase)))) : E (F (FIREABLE(Enolase))) : A (G ((NOT FIREABLE(Transaldolase) OR NOT FIREABLE(GAP_dehydrogenase)))) : E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: computing a collection of formulas
lola: RUNNING
lola: subprocess 0 will run for 221 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Lactate_dehydrogenase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 1 will run for 236 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Hexokinase) AND NOT FIREABLE(Phosphoglycerate_kinase)) OR ((NOT FIREABLE(Lactate_dehydrogenase) OR NOT FIREABLE(Phosphoglycerate_kinase)) AND NOT FIREABLE(Pyruvate_kinase)))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 30 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: state equation: calling and running sara
lola: subprocess 2 will run for 252 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (NOT FIREABLE(Transketolase2)))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 3 will run for 272 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Pyruvate_kinase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 2 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-3.sara
lola: The predicate is reachable.
lola: ========================================
lola: state equation: calling and running sara
lola: subprocess 4 will run for 295 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Aldolase) AND FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 3 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-4.sara
sara: try reading problem file GPPP-PT-C0100N0000000100-ReachabilityFireability-3.sara.
sara: try reading problem file GPPP-PT-C0100N0000000100-ReachabilityFireability.sara.
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000000100-ReachabilityFireability-4.sara.
sara: sara: sara: place or transition ordering is non-deterministicplace or transition ordering is non-deterministicplace or transition ordering is non-deterministic





lola: state equation: solution impossible
lola: SUBRESULT
lola: result: no
lola: produced by: state equation
lola: The predicate is unreachable.
lola: ========================================
lola: subprocess 5 will run for 321 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((FIREABLE(Aldolase)) AND NOT FIREABLE(remove))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 3 literals and 2 conjunctive subformulas
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 6 will run for 354 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((((NOT FIREABLE(Enolase) OR NOT FIREABLE(TIM_forward)) AND FIREABLE(Transketolase1)) OR ((NOT FIREABLE(Aldolase) OR NOT FIREABLE(Phosphoglycerate_mutase)) AND (NOT FIREABLE(TIM_backward) OR NOT FIREABLE(generate))))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 20 literals and 6 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-6.sara
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 7 will run for 393 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-7.sara
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: calling and running sara
lola: ========================================
lola: subprocess 8 will run for 442 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((((NOT FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Ru5P_isomerase)) OR ((FIREABLE(Glutathione_oxidation) OR FIREABLE(Transketolase2)) AND NOT FIREABLE(Phosphoglycerate_mutase))) AND ((FIREABLE(Lactate_dehydrogenase) AND FIREABLE(Glutathione_oxidation) AND NOT FIREABLE(Transaldolase)) OR (FIREABLE(remove) AND FIREABLE(Lactate_dehydrogenase))))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 100 literals and 16 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 9 will run for 505 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G (((FIREABLE(Transaldolase) AND FIREABLE(remove) AND FIREABLE(Glutathione_reductose) AND FIREABLE(Phosphofructokinase)) OR (NOT FIREABLE(Glutathione_reductose) AND NOT FIREABLE(Phosphoglycerate_mutase)) OR FIREABLE(Glutathione_reductose))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
sara: try reading problem file GPPP-PT-C0100N0000000100-ReachabilityFireability-7.sara.
lola: state equation: Generated DNF with 54 literals and 18 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-9.sara
sara: place or transition ordering is non-deterministic
lola: SUBRESULT
lola: result: no
lola: produced by: state space
lola: The predicate is not invariant.
lola: ========================================
lola: subprocess 10 will run for 590 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Aldolase) AND FIREABLE(Enolase) AND NOT FIREABLE(TIM_backward) AND (NOT FIREABLE(Phosphoglycerate_mutase) OR NOT FIREABLE(GAP_dehydrogenase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 20 literals and 5 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-10.sara
lola: ========================================
lola: subprocess 11 will run for 708 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((FIREABLE(Phosphoclucose_isomerase) AND FIREABLE(Transaldolase) AND FIREABLE(Aldolase) AND ((FIREABLE(remove) AND FIREABLE(Phosphoglycerate_kinase)) OR (FIREABLE(Enolase) AND FIREABLE(TIM_forward))) AND (FIREABLE(generate) OR FIREABLE(Pyruvate_kinase) OR NOT FIREABLE(Enolase)))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)

lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 53 literals and 5 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-11.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000000100-ReachabilityFireability-11.sara.
sara: place or transition ordering is non-deterministic
lola: sara is running 0 secs || 3021121 markings, 7939832 edges, 604224 markings/sec, 0 secs
lola: sara is running 5 secs || 5895999 markings, 15563109 edges, 574976 markings/sec, 5 secs
lola: sara is running 10 secs || 8858967 markings, 23453086 edges, 592594 markings/sec, 10 secs
lola: sara is running 15 secs || 10996241 markings, 29326676 edges, 427455 markings/sec, 15 secs
lola: sara is running 20 secs || 13090279 markings, 35188464 edges, 418808 markings/sec, 20 secs
lola: sara is running 25 secs || 15188544 markings, 41373348 edges, 419653 markings/sec, 25 secs
lola: sara is running 30 secs || 17378557 markings, 47584257 edges, 438003 markings/sec, 30 secs
lola: sara is running 35 secs || 19230365 markings, 53119806 edges, 370362 markings/sec, 35 secs
lola: sara is running 40 secs || 21252000 markings, 58485645 edges, 404327 markings/sec, 40 secs
lola: sara is running 45 secs || 23408613 markings, 64159091 edges, 431323 markings/sec, 45 secs
lola: sara is running 50 secs || 25597915 markings, 69874921 edges, 437860 markings/sec, 50 secs
lola: sara is running 55 secs || 27466623 markings, 74855744 edges, 373742 markings/sec, 55 secs
lola: sara is running 60 secs || 29356229 markings, 80225050 edges, 377921 markings/sec, 60 secs
lola: sara is running 65 secs || 31170378 markings, 85453702 edges, 362830 markings/sec, 65 secs
lola: sara is running 70 secs || 33073139 markings, 90977724 edges, 380552 markings/sec, 70 secs
lola: sara is running 75 secs || 35086410 markings, 96744345 edges, 402654 markings/sec, 75 secs
lola: sara is running 80 secs || 37163104 markings, 102557793 edges, 415339 markings/sec, 80 secs
lola: sara is running 85 secs || 39275025 markings, 108354106 edges, 422384 markings/sec, 85 secs
lola: sara is running 90 secs || 41008349 markings, 113685954 edges, 346665 markings/sec, 90 secs
lola: sara is running 95 secs || 43120277 markings, 119479010 edges, 422386 markings/sec, 95 secs
lola: sara is running 100 secs || 45156443 markings, 125580930 edges, 407233 markings/sec, 100 secs
lola: sara is running 105 secs || 47144664 markings, 130981744 edges, 397644 markings/sec, 105 secs
lola: sara is running 110 secs || 48825783 markings, 135950885 edges, 336224 markings/sec, 110 secs
lola: sara is running 115 secs || 50113359 markings, 140415631 edges, 257515 markings/sec, 115 secs
lola: sara is running 120 secs || 51467486 markings, 144824884 edges, 270825 markings/sec, 120 secs
lola: sara is running 125 secs || 53822961 markings, 150865509 edges, 471095 markings/sec, 125 secs
lola: sara is running 130 secs || 56200609 markings, 156969816 edges, 475530 markings/sec, 130 secs
lola: sara is running 135 secs || 58201945 markings, 162513974 edges, 400267 markings/sec, 135 secs
lola: sara is running 140 secs || 59882944 markings, 166998213 edges, 336200 markings/sec, 140 secs
lola: sara is running 145 secs || 61359391 markings, 171259183 edges, 295289 markings/sec, 145 secs
lola: sara is running 150 secs || 62969929 markings, 175637894 edges, 322108 markings/sec, 150 secs
lola: sara is running 155 secs || 64345283 markings, 179569325 edges, 275071 markings/sec, 155 secs
lola: sara is running 160 secs || 65965504 markings, 184113693 edges, 324044 markings/sec, 160 secs
lola: sara is running 165 secs || 67427519 markings, 188496831 edges, 292403 markings/sec, 165 secs
lola: sara is running 170 secs || 68968368 markings, 193035157 edges, 308170 markings/sec, 170 secs
lola: sara is running 175 secs || 70927626 markings, 198777154 edges, 391852 markings/sec, 175 secs
lola: sara is running 180 secs || 72895097 markings, 204364931 edges, 393494 markings/sec, 180 secs
lola: sara is running 185 secs || 74950948 markings, 210078968 edges, 411170 markings/sec, 185 secs
lola: sara is running 190 secs || 76963222 markings, 215651436 edges, 402455 markings/sec, 190 secs
lola: sara is running 195 secs || 78997232 markings, 221339869 edges, 406802 markings/sec, 195 secs
lola: sara is running 200 secs || 80800320 markings, 226600795 edges, 360618 markings/sec, 200 secs
lola: sara is running 205 secs || 82520916 markings, 231883246 edges, 344119 markings/sec, 205 secs
lola: sara is running 210 secs || 84774725 markings, 237804209 edges, 450762 markings/sec, 210 secs
lola: sara is running 215 secs || 86610933 markings, 243495790 edges, 367242 markings/sec, 215 secs
lola: sara is running 220 secs || 88217447 markings, 248043332 edges, 321303 markings/sec, 220 secs
lola: sara is running 225 secs || 90350550 markings, 253706427 edges, 426621 markings/sec, 225 secs
lola: sara is running 230 secs || 91912259 markings, 258418007 edges, 312342 markings/sec, 230 secs
lola: sara is running 235 secs || 93175178 markings, 262877221 edges, 252584 markings/sec, 235 secs
lola: sara is running 240 secs || 94348510 markings, 267169670 edges, 234666 markings/sec, 240 secs
lola: sara is running 245 secs || 95649127 markings, 271516392 edges, 260123 markings/sec, 245 secs
lola: sara is running 250 secs || 96976893 markings, 275836883 edges, 265553 markings/sec, 250 secs
lola: sara is running 255 secs || 98544614 markings, 280180770 edges, 313544 markings/sec, 255 secs
lola: sara is running 260 secs || 99905674 markings, 284057637 edges, 272212 markings/sec, 260 secs
lola: sara is running 265 secs || 101131326 markings, 287709385 edges, 245130 markings/sec, 265 secs
lola: sara is running 270 secs || 102352505 markings, 291336711 edges, 244236 markings/sec, 270 secs
lola: sara is running 275 secs || 103628969 markings, 294977763 edges, 255293 markings/sec, 275 secs
lola: sara is running 280 secs || 105451554 markings, 299911451 edges, 364517 markings/sec, 280 secs
lola: sara is running 285 secs || 107869888 markings, 306079626 edges, 483667 markings/sec, 285 secs
lola: sara is running 290 secs || 110045961 markings, 311927560 edges, 435215 markings/sec, 290 secs
lola: sara is running 295 secs || 112005396 markings, 317247170 edges, 391887 markings/sec, 295 secs
lola: sara is running 300 secs || 113654303 markings, 321804143 edges, 329781 markings/sec, 300 secs
lola: sara is running 305 secs || 115285153 markings, 326553774 edges, 326170 markings/sec, 305 secs
lola: sara is running 310 secs || 116970242 markings, 331077911 edges, 337018 markings/sec, 310 secs
lola: sara is running 315 secs || 118612492 markings, 335858502 edges, 328450 markings/sec, 315 secs
lola: sara is running 320 secs || 120099553 markings, 339818067 edges, 297412 markings/sec, 320 secs
lola: sara is running 325 secs || 121684751 markings, 344417971 edges, 317040 markings/sec, 325 secs
lola: sara is running 330 secs || 123255193 markings, 348943417 edges, 314088 markings/sec, 330 secs
lola: sara is running 335 secs || 124832052 markings, 353661157 edges, 315372 markings/sec, 335 secs
lola: sara is running 340 secs || 126426258 markings, 358363456 edges, 318841 markings/sec, 340 secs
lola: sara is running 345 secs || 128342191 markings, 363958754 edges, 383187 markings/sec, 345 secs
lola: sara is running 350 secs || 130316612 markings, 369555813 edges, 394884 markings/sec, 350 secs
lola: sara is running 355 secs || 132264447 markings, 375158742 edges, 389567 markings/sec, 355 secs
lola: sara is running 360 secs || 134291261 markings, 380831730 edges, 405363 markings/sec, 360 secs
lola: sara is running 365 secs || 136311766 markings, 386485755 edges, 404101 markings/sec, 365 secs
lola: sara is running 370 secs || 138280582 markings, 391927698 edges, 393763 markings/sec, 370 secs
lola: sara is running 375 secs || 140227900 markings, 397341209 edges, 389464 markings/sec, 375 secs
lola: sara is running 380 secs || 141909456 markings, 402239506 edges, 336311 markings/sec, 380 secs
lola: sara is running 385 secs || 143429049 markings, 407064069 edges, 303919 markings/sec, 385 secs
lola: sara is running 390 secs || 145490421 markings, 412818253 edges, 412274 markings/sec, 390 secs
lola: sara is running 395 secs || 147550154 markings, 418335882 edges, 411947 markings/sec, 395 secs
lola: sara is running 400 secs || 149311946 markings, 423710361 edges, 352358 markings/sec, 400 secs
lola: sara is running 405 secs || 150898072 markings, 428243760 edges, 317225 markings/sec, 405 secs
lola: sara is running 410 secs || 153071651 markings, 433891032 edges, 434716 markings/sec, 410 secs
lola: sara is running 415 secs || 154973790 markings, 439129801 edges, 380428 markings/sec, 415 secs
lola: sara is running 420 secs || 156212728 markings, 443294988 edges, 247788 markings/sec, 420 secs
lola: sara is running 425 secs || 157339290 markings, 447588476 edges, 225312 markings/sec, 425 secs
lola: sara is running 430 secs || 158560283 markings, 451862394 edges, 244199 markings/sec, 430 secs
lola: sara is running 435 secs || 159720374 markings, 456082535 edges, 232018 markings/sec, 435 secs
lola: sara is running 440 secs || 161009047 markings, 460431469 edges, 257735 markings/sec, 440 secs
lola: sara is running 445 secs || 162223243 markings, 464680240 edges, 242839 markings/sec, 445 secs
lola: sara is running 450 secs || 163880330 markings, 469226314 edges, 331417 markings/sec, 450 secs
lola: sara is running 455 secs || 165008298 markings, 472514874 edges, 225594 markings/sec, 455 secs
lola: sara is running 460 secs || 166137492 markings, 476082254 edges, 225839 markings/sec, 460 secs
lola: sara is running 465 secs || 167980901 markings, 481276728 edges, 368682 markings/sec, 465 secs
lola: sara is running 470 secs || 169825780 markings, 486475961 edges, 368976 markings/sec, 470 secs
lola: sara is running 475 secs || 171563871 markings, 491526226 edges, 347618 markings/sec, 475 secs
lola: sara is running 480 secs || 173450820 markings, 496675327 edges, 377390 markings/sec, 480 secs
lola: sara is running 485 secs || 175755488 markings, 502714311 edges, 460934 markings/sec, 485 secs
lola: sara is running 490 secs || 177889610 markings, 508255023 edges, 426824 markings/sec, 490 secs
lola: sara is running 495 secs || 179839958 markings, 513617111 edges, 390070 markings/sec, 495 secs
lola: sara is running 500 secs || 181564932 markings, 518285381 edges, 344995 markings/sec, 500 secs
lola: sara is running 505 secs || 183096757 markings, 522673074 edges, 306365 markings/sec, 505 secs
lola: sara is running 510 secs || 184573060 markings, 526894066 edges, 295261 markings/sec, 510 secs
lola: sara is running 515 secs || 186161980 markings, 531219706 edges, 317784 markings/sec, 515 secs
lola: sara is running 520 secs || 187732783 markings, 535837787 edges, 314161 markings/sec, 520 secs
lola: sara is running 525 secs || 189359145 markings, 540223243 edges, 325272 markings/sec, 525 secs
lola: sara is running 530 secs || 190784993 markings, 544338765 edges, 285170 markings/sec, 530 secs
lola: sara is running 535 secs || 192323665 markings, 548505970 edges, 307734 markings/sec, 535 secs
lola: sara is running 540 secs || 193692719 markings, 552420969 edges, 273811 markings/sec, 540 secs
lola: sara is running 545 secs || 195268971 markings, 556857633 edges, 315250 markings/sec, 545 secs
lola: sara is running 550 secs || 196679207 markings, 561074089 edges, 282047 markings/sec, 550 secs
lola: sara is running 555 secs || 198345301 markings, 566116646 edges, 333219 markings/sec, 555 secs
lola: sara is running 560 secs || 199473091 markings, 569485805 edges, 225558 markings/sec, 560 secs
lola: sara is running 565 secs || 199496887 markings, 569550686 edges, 4759 markings/sec, 565 secs
lola: sara is running 570 secs || 199504571 markings, 569572736 edges, 1537 markings/sec, 570 secs
lola: sara is running 575 secs || 199708256 markings, 570157279 edges, 40737 markings/sec, 575 secs
lola: Child process aborted or communication problem between parent and child process
lola: subprocess 12 will run for 739 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F ((NOT FIREABLE(Hexokinase) AND FIREABLE(Phosphofructokinase))))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 3 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 13 will run for 986 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Enolase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: The predicate is reachable.
lola: ========================================
lola: subprocess 14 will run for 1479 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: A (G ((NOT FIREABLE(Transaldolase) OR NOT FIREABLE(GAP_dehydrogenase))))
lola: ========================================
lola: SUBTASK
lola: checking invariance
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 7 literals and 1 conjunctive subformulas
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-14.sara
lola: state equation: calling and running sara
sara: try reading problem file GPPP-PT-C0100N0000000100-ReachabilityFireability-14.sara.
sara: place or transition ordering is non-deterministic

lola: state equation: solution impossible
lola: SUBRESULT
lola: result: yes
lola: produced by: state equation
lola: The predicate is invariant.
lola: ========================================
lola: subprocess 15 will run for 2958 seconds at most (--localtimelimit=-1)
lola: ========================================
lola: ...considering subproblem: E (F (FIREABLE(Phosphoglycerate_mutase)))
lola: ========================================
lola: SUBTASK
lola: checking reachability
lola: Planning: workflow for reachability check: stateequation||search (--findpath=off)
lola: STORE
lola: using a bit-perfect encoder (--encoder=bit)
lola: using 84 bytes per marking, with 0 unused bits
lola: using a prefix tree store (--store=prefix)
lola: SEARCH (state space)
lola: state space: using reachability graph (--search=depth)
lola: state space: using reachability preserving stubborn set method with insertion algorithm (--stubborn=tarjan)
lola: RUNNING
lola: state equation: Generated DNF with 1 literals and 1 conjunctive subformulas
lola: SUBRESULT
lola: result: yes
lola: produced by: state space
lola: state equation: write sara problem file to GPPP-PT-C0100N0000000100-ReachabilityFireability-15.sara
lola: The predicate is reachable.
lola: RESULT
lola:
SUMMARY: yes no no yes no no no yes yes no yes unknown yes yes yes yes
lola: ========================================
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-0 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-1 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-2 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-3 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-4 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-5 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-6 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-7 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-8 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-9 FALSE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-10 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-11 CANNOT_COMPUTE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-12 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-13 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-14 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
FORMULA GPPP-PT-C0100N0000000100-ReachabilityFireability-15 TRUE TECHNIQUES COLLATERAL_PROCESSING EXPLICIT STATE_COMPRESSION STUBBORN_SETS TOPOLOGICAL USE_NUPN
----- Kill lola and sara stdout -----
----- Finished stdout -----

BK_STOP 1496395645949

--------------------
content from stderr:

----- Start make prepare stderr -----
----- Start make result stderr -----
----- Start make result stderr -----
----- Kill lola and sara stderr -----
----- Finished stderr -----

Sequence of Actions to be Executed by the VM

This is useful if one wants to reexecute the tool in the VM from the submitted image disk.

set -x
# this is for BenchKit: configuration of major elements for the test
export BK_INPUT="S_GPPP-PT-C0100N0000000100"
export BK_EXAMINATION="ReachabilityFireability"
export BK_TOOL="lola"
export BK_RESULT_DIR="/tmp/BK_RESULTS/OUTPUTS"
export BK_TIME_CONFINEMENT="3600"
export BK_MEMORY_CONFINEMENT="16384"

# this is specific to your benchmark or test

export BIN_DIR="$HOME/BenchKit/bin"

# remove the execution directoty if it exists (to avoid increse of .vmdk images)
if [ -d execution ] ; then
rm -rf execution
fi

tar xzf /home/mcc/BenchKit/INPUTS/S_GPPP-PT-C0100N0000000100.tgz
mv S_GPPP-PT-C0100N0000000100 execution

# this is for BenchKit: explicit launching of the test

cd execution
echo "====================================================================="
echo " Generated by BenchKit 2-3254"
echo " Executing tool lola"
echo " Input is S_GPPP-PT-C0100N0000000100, examination is ReachabilityFireability"
echo " Time confinement is $BK_TIME_CONFINEMENT seconds"
echo " Memory confinement is 16384 MBytes"
echo " Number of cores is 4"
echo " Run identifier is r108-blw3-149441612600540"
echo "====================================================================="
echo
echo "--------------------"
echo "content from stdout:"
echo
echo "=== Data for post analysis generated by BenchKit (invocation template)"
echo
if [ "ReachabilityFireability" = "UpperBounds" ] ; then
echo "The expected result is a vector of positive values"
echo NUM_VECTOR
elif [ "ReachabilityFireability" != "StateSpace" ] ; then
echo "The expected result is a vector of booleans"
echo BOOL_VECTOR
else
echo "no data necessary for post analysis"
fi
echo
if [ -f "ReachabilityFireability.txt" ] ; then
echo "here is the order used to build the result vector(from text file)"
for x in $(grep Property ReachabilityFireability.txt | cut -d ' ' -f 2 | sort -u) ; do
echo "FORMULA_NAME $x"
done
elif [ -f "ReachabilityFireability.xml" ] ; then # for cunf (txt files deleted;-)
echo echo "here is the order used to build the result vector(from xml file)"
for x in $(grep '' ReachabilityFireability.xml | cut -d '>' -f 2 | cut -d '<' -f 1 | sort -u) ; do
echo "FORMULA_NAME $x"
done
fi
echo
echo "=== Now, execution of the tool begins"
echo
echo -n "BK_START "
date -u +%s%3N
echo
timeout -s 9 $BK_TIME_CONFINEMENT bash -c "/home/mcc/BenchKit/BenchKit_head.sh 2> STDERR ; echo ; echo -n \"BK_STOP \" ; date -u +%s%3N"
if [ $? -eq 137 ] ; then
echo
echo "BK_TIME_CONFINEMENT_REACHED"
fi
echo
echo "--------------------"
echo "content from stderr:"
echo
cat STDERR ;